Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for hmgcl

Gene Name Gene ID Reads Annotation
hmgcl ENSDARG00000021220 2468 3-hydroxy-3-methylglutaryl-CoA lyase [Source:ZFIN;Acc:ZDB-GENE-040426-958]










Genes with expression patterns similar to hmgcl

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. hmgcl ENSDARG00000021220 2468 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 3-hydroxy-3-methylglutaryl-CoA lyase [Source:ZFIN;Acc:ZDB-GENE-040426-958]
2. sh3gl3a ENSDARG00000013360 3602 1.745 - 0.751 - - - - 0.994 - - SH3-domain GRB2-like 3a [Source:ZFIN;Acc:ZDB-GENE-070112-242]
3. slc16a12b ENSDARG00000089885 3744 1.743 - 0.750 - - - - 0.993 - - solute carrier family 16, member 12b [Source:ZFIN;Acc:ZDB-GENE-050522-80]
4. ddx1 ENSDARG00000032117 1295 1.568 - 0.794 - 0.774 - - - - - DEAD (Asp-Glu-Ala-Asp) box helicase 1 [Source:ZFIN;Acc:ZDB-GENE-041001-215]
5. cyc1 ENSDARG00000038075 16699 1.545 - - - 0.813 - 0.732 - - - cytochrome c-1 [Source:ZFIN;Acc:ZDB-GENE-031105-2]
6. BX323045.3 BX323045.3 1044 1.519 - 0.771 - 0.748 - - - - -
7. si:ch73-131e21.5 si:ch73-131e21.5 1895 1.497 - 0.765 - - - 0.732 - - -
8. chrac1 ENSDARG00000042337 2590 1.455 0.723 - - - - 0.732 - - - chromatin accessibility complex 1 [Source:ZFIN;Acc:ZDB-GENE-050227-18]
9. opa3 ENSDARG00000061761 1114 1.45 0.724 - - 0.726 - - - - - optic atrophy 3 [Source:ZFIN;Acc:ZDB-GENE-050210-1]
10. nr2f1a ENSDARG00000052695 5037 1 - - - - - - 1.000 - - nuclear receptor subfamily 2, group F, member 1a [Source:ZFIN;Acc:ZDB-GENE-980526-115]
11. rbx1 ENSDARG00000038030 14611 0.998 - - - - - - 0.998 - - ring-box 1, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-041008-106]
12. tomm20b ENSDARG00000103566 12436 0.995 - - - - - - 0.995 - - translocase of outer mitochondrial membrane 20b [Source:ZFIN;Acc:ZDB-GENE-040718-451]
13. BX548078.1 ENSDARG00000093780 1325 0.994 - - - - - - 0.994 - -
14. stx12 ENSDARG00000098813 2576 0.994 - - - - - - 0.994 - - syntaxin 12 [Source:ZFIN;Acc:ZDB-GENE-040625-11]
15. cisd1 ENSDARG00000079516, ENSDARG00000114546 2677 0.994 - - - - - - 0.994 - - CDGSH iron sulfur domain 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1162]
16. parp1 ENSDARG00000019529 6787 0.994 - - - - - - 0.994 - - poly (ADP-ribose) polymerase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3955]
17. wu:fj08f03 wu:fj08f03 1337 0.994 - - - - - - 0.994 - -
18. rgma ENSDARG00000012248 2238 0.994 - - - - - - 0.994 - - repulsive guidance molecule BMP co-receptor a [Source:ZFIN;Acc:ZDB-GENE-040527-1]
19. CT955967.1 ENSDARG00000099956 2885 0.994 - - - - - - 0.994 - -
20. aspg ENSDARG00000052942 1406 0.994 - - - - - - 0.994 - - asparaginase homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-070820-14]
21. cth ENSDARG00000074301 3860 0.994 - - - - - - 0.994 - - cystathionase (cystathionine gamma-lyase) [Source:ZFIN;Acc:ZDB-GENE-030131-774]
22. rbm39a ENSDARG00000011613 4520 0.994 - - - - - - 0.994 - - RNA binding motif protein 39a [Source:ZFIN;Acc:ZDB-GENE-040426-2852]
23. srsf5a ENSDARG00000029818 15600 0.994 - - - - - - 0.994 - - serine/arginine-rich splicing factor 5a [Source:ZFIN;Acc:ZDB-GENE-030131-7336]
24. AL772300.3 AL772300.3 1752 0.994 - - - - - - 0.994 - -
25. serpine2 ENSDARG00000029353 2274 0.994 - - - - - - 0.994 - - serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-848]
26. efcab7 ENSDARG00000020279 1030 0.994 - - - - - - 0.994 - - EF-hand calcium binding domain 7 [Source:ZFIN;Acc:ZDB-GENE-040625-115]
27. MRPS28 ENSDARG00000041538, ENSDARG00000114420 2014 0.994 - - - - - - 0.994 - - mitochondrial ribosomal protein S28 [Source:ZFIN;Acc:ZDB-GENE-061110-52]
28. loxl2a ENSDARG00000044010 1906 0.994 - - - - - - 0.994 - - lysyl oxidase-like 2a [Source:ZFIN;Acc:ZDB-GENE-070818-1]
29. PCDH9 ENSDARG00000063264 1309 0.994 - - - - - - 0.994 - - protocadherin 9 [Source:ZFIN;Acc:ZDB-GENE-091015-1]
30. phf2 ENSDARG00000018691 3341 0.994 - - - - - - 0.994 - - PHD finger protein 2 [Source:ZFIN;Acc:ZDB-GENE-050302-10]
31. TUBGCP6 1991 0.994 - - - - - - 0.994 - - tubulin, gamma complex associated protein 6
32. dusp4 ENSDARG00000044688, ENSDARG00000112584, ENSDARG00000116379 3232 0.994 - - - - - - 0.994 - - dual specificity phosphatase 4 [Source:ZFIN;Acc:ZDB-GENE-040426-709]
33. chd2 ENSDARG00000060687 3832 0.994 - - - - - - 0.994 - - chromodomain helicase DNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-050419-256]
34. loxl1 ENSDARG00000054451 2485 0.994 - - - - - - 0.994 - - lysyl oxidase-like 1 [Source:ZFIN;Acc:ZDB-GENE-060503-693]
35. EIF4G1_1 EIF4G1_1 3721 0.994 - - - - - - 0.994 - -
36. wnk1b ENSDARG00000039392 3587 0.994 - - - - - - 0.994 - - WNK lysine deficient protein kinase 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2656]
37. cep97 ENSDARG00000102407 1154 0.994 - - - - - - 0.994 - - centrosomal protein 97 [Source:ZFIN;Acc:ZDB-GENE-031030-11]
38. cmip ENSDARG00000062933 4521 0.993 - - - - - - 0.993 - - c-Maf inducing protein [Source:ZFIN;Acc:ZDB-GENE-050419-50]
39. ndufa7 ENSDARG00000036684 6051 0.993 - - - - - - 0.993 - - NADH:ubiquinone oxidoreductase subunit A7 [Source:ZFIN;Acc:ZDB-GENE-040801-169]
40. sec31a ENSDARG00000021082, ENSDARG00000111434, ENSDARG00000114514 6991 0.993 - - - - - - 0.993 - - SEC31 homolog A, COPII coat complex component [Source:ZFIN;Acc:ZDB-GENE-020919-2]
41. bin2a ENSDARG00000003219 1369 0.993 - - - - - - 0.993 - - bridging integrator 2a [Source:ZFIN;Acc:ZDB-GENE-041114-126]
42. vamp3 ENSDARG00000070161 6396 0.993 - - - - - - 0.993 - - vesicle-associated membrane protein 3 (cellubrevin) [Source:ZFIN;Acc:ZDB-GENE-040625-45]
43. hoxb8a ENSDARG00000056027 6340 0.993 - - - - - - 0.993 - - homeobox B8a [Source:ZFIN;Acc:ZDB-GENE-990415-108]
44. rab5aa ENSDARG00000018602 8947 0.992 - - - - - - 0.992 - - RAB5A, member RAS oncogene family, a [Source:ZFIN;Acc:ZDB-GENE-030131-139]
45. zgc:101000 zgc:101000 9041 0.992 - - - - - - 0.992 - -
46. FP102272.1 FP102272.1 9473 0.992 - - - - - - 0.992 - -
47. rab1ba ENSDARG00000058044 5080 0.992 - - - - - - 0.992 - - zRAB1B, member RAS oncogene family a [Source:ZFIN;Acc:ZDB-GENE-040426-873]
48. psmd6 ENSDARG00000070674 4675 0.991 - - - - - - 0.991 - - proteasome 26S subunit, non-ATPase 6 [Source:ZFIN;Acc:ZDB-GENE-040426-1038]
49. lzts2a ENSDARG00000074597, ENSDARG00000113794 7477 0.991 - - - - - - 0.991 - - leucine zipper, putative tumor suppressor 2a [Source:ZFIN;Acc:ZDB-GENE-090313-276]
50. eif3c ENSDARG00000016443 18003 0.99 - - - - - - 0.990 - - eukaryotic translation initiation factor 3, subunit C [Source:ZFIN;Acc:ZDB-GENE-030131-6166]
51. CU463857.1 CU463857.1 5541 0.99 - - - - - - 0.990 - -
52. rnaseka ENSDARG00000069461 10304 0.99 - - - - - - 0.990 - - ribonuclease, RNase K a [Source:ZFIN;Acc:ZDB-GENE-060825-301]
53. cx43.4 ENSDARG00000007099 16369 0.989 - - - - - - 0.989 - - connexin 43.4 [Source:ZFIN;Acc:ZDB-GENE-990415-38]
54. lgals3l lgals3l 3833 0.989 - - - - - - 0.989 - -
55. lamc1 ENSDARG00000036279 11025 0.989 - - - - - - 0.989 - - laminin, gamma 1 [Source:ZFIN;Acc:ZDB-GENE-021226-3]
56. mat2aa ENSDARG00000040334 10769 0.987 - - - - - - 0.987 - - methionine adenosyltransferase II, alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-2049]
57. snd1 ENSDARG00000006766 12906 0.985 - - - - - - 0.985 - - staphylococcal nuclease and tudor domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3124]
58. qkia ENSDARG00000097478 18572 0.985 - - - - - - 0.985 - - QKI, KH domain containing, RNA binding a [Source:ZFIN;Acc:ZDB-GENE-990415-230]
59. oaz1a ENSDARG00000071403 21112 0.983 - - - - - - 0.983 - - ornithine decarboxylase antizyme 1a [Source:ZFIN;Acc:ZDB-GENE-020731-4]
60. IDH2 ENSDARG00000003795 18659 0.98 - - - - - - 0.980 - - isocitrate dehydrogenase 2 (NADP+), mitochondrial [Source:ZFIN;Acc:ZDB-GENE-031118-95]
61. ENSDARG00000070355 ENSDARG00000070355 8316 0.978 - - - - - - 0.978 - -
62. ywhaba ENSDARG00000013078 42000 0.977 - - - - - - 0.977 - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide a [Source:ZFIN;Acc:ZDB-GENE-030131-6583]
63. suclg1 ENSDARG00000052712 17570 0.976 - - - - - - 0.976 - - succinate-CoA ligase, alpha subunit [Source:ZFIN;Acc:ZDB-GENE-040912-101]
64. tubb4b ENSDARG00000002344 30333 0.974 - - - - - - 0.974 - - tubulin, beta 4B class IVb [Source:ZFIN;Acc:ZDB-GENE-030131-8625]
65. ldha ENSDARG00000101251 10868 0.973 - - - - - - 0.973 - - lactate dehydrogenase A4 [Source:ZFIN;Acc:ZDB-GENE-991026-5]
66. khdrbs1a ENSDARG00000052856 53666 0.954 - - - - - - 0.954 - - KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
67. rpl32 ENSDARG00000054818, ENSDARG00000110237, ENSDARG00000115707 37036 0.952 - - - - - - 0.952 - - ribosomal protein L32 [Source:ZFIN;Acc:ZDB-GENE-060331-105]
68. nqo1 ENSDARG00000010250 6430 0.948 - - - - - - 0.948 - - NAD(P)H dehydrogenase, quinone 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1226]
69. fabp1b.1 ENSDARG00000059227 5670 0.936 - - - - - - 0.936 - - fatty acid binding protein 1b, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050522-96]
70. tpi1b ENSDARG00000040988, ENSDARG00000113061 29752 0.934 - - - - - - 0.934 - - triosephosphate isomerase 1b [Source:ZFIN;Acc:ZDB-GENE-020416-4]
71. rps12 ENSDARG00000036875, ENSDARG00000115157 92636 0.92 - - - - - - 0.920 - - ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
72. si:dkey-150i13.2 ENSDARG00000071052 79030 0.918 - - - - - - 0.918 - - si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
73. ssu72 ENSDARG00000031216 2350 0.911 - 0.911 - - - - - - - SSU72 homolog, RNA polymerase II CTD phosphatase [Source:ZFIN;Acc:ZDB-GENE-040426-1689]
74. rps24 ENSDARG00000039347 70399 0.888 - - - - - - 0.888 - - ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
75. tor1 ENSDARG00000077950 1027 0.887 - 0.887 - - - - - - - torsin family 1 [Source:ZFIN;Acc:ZDB-GENE-080917-50]
76. ccng1 ENSDARG00000076667, ENSDARG00000110260 40792 0.883 - - - - - - 0.883 - - cyclin G1 [Source:ZFIN;Acc:ZDB-GENE-020322-1]
77. rps10 ENSDARG00000034897 71395 0.882 - - - - - - 0.882 - - ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
78. lgmn ENSDARG00000039150 2788 0.877 - 0.877 - - - - - - - legumain [Source:ZFIN;Acc:ZDB-GENE-021030-1]
79. amfr 774 0.872 - 0.872 - - - - - - - autocrine motility factor receptor, E3 ubiquitin protein ligase a, transcript variant X1
80. ROMO1 ENSDARG00000038076 7999 0.868 - - - - - - 0.868 - - reactive oxygen species modulator 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1768]
81. arl14ep ENSDARG00000001210 3029 0.867 - 0.867 - - - - - - - ADP-ribosylation factor-like 14 effector protein [Source:ZFIN;Acc:ZDB-GENE-060825-216]
82. slc43a2b ENSDARG00000061120, ENSDARG00000117188 33657 0.867 - - - - - - 0.867 - - solute carrier family 43 (amino acid system L transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-041212-6]
83. snn ENSDARG00000099888 399 0.867 - 0.867 - - - - - - - stannin [Source:ZFIN;Acc:ZDB-GENE-040426-1987]
84. fkbp9 ENSDARG00000005023 17518 0.865 - - - - - - 0.865 - - FK506 binding protein 9 [Source:ZFIN;Acc:ZDB-GENE-040801-23]
85. zgc:154018 zgc:154018 362 0.863 - 0.863 - - - - - - -
86. wdr11 ENSDARG00000075245 743 0.861 - 0.861 - - - - - - - WD repeat domain 11 [Source:ZFIN;Acc:ZDB-GENE-081107-28]
87. bcmo1a bcmo1a 402 0.857 - 0.857 - - - - - - -
88. zgc:173961 zgc:173961 1540 0.853 - 0.853 - - - - - - -
89. csnk1g2a ENSDARG00000005458 2917 0.852 - 0.852 - - - - - - - casein kinase 1, gamma 2a [Source:ZFIN;Acc:ZDB-GENE-030131-6445]
90. RAC1 RAC1 2008 0.851 - 0.851 - - - - - - -
91. farp2 ENSDARG00000016429 3133 0.85 - - - 0.850 - - - - - FERM, RhoGEF and pleckstrin domain protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2993]
92. ccdc90b ENSDARG00000044626, ENSDARG00000110887 501 0.85 - 0.850 - - - - - - - coiled-coil domain containing 90B [Source:ZFIN;Acc:ZDB-GENE-040724-162]
93. cpped1 ENSDARG00000031968, ENSDARG00000112438 693 0.85 - 0.850 - - - - - - - calcineurin-like phosphoesterase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041114-118]
94. bub3 ENSDARG00000075883 1333 0.847 - 0.847 - - - - - - - BUB3 mitotic checkpoint protein [Source:ZFIN;Acc:ZDB-GENE-041010-210]
95. ankrd22 ENSDARG00000002298 261 0.847 - 0.847 - - - - - - - ankyrin repeat domain 22 [Source:ZFIN;Acc:ZDB-GENE-040426-1120]
96. mtg2 ENSDARG00000063574 299 0.845 - 0.845 - - - - - - - mitochondrial ribosome-associated GTPase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2209]
97. frmd8 ENSDARG00000073696 2661 0.834 - 0.834 - - - - - - - FERM domain containing 8 [Source:ZFIN;Acc:ZDB-GENE-090812-5]
98. gpbp1l1 ENSDARG00000075569, ENSDARG00000112704 3478 0.832 - 0.832 - - - - - - - GC-rich promoter binding protein 1-like 1 [Source:ZFIN;Acc:ZDB-GENE-031118-220]
99. slc2a3a ENSDARG00000013295 2449 0.831 - 0.831 - - - - - - - solute carrier family 2 (facilitated glucose transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-040718-390]
100. sfxn4 ENSDARG00000069832, ENSDARG00000115771 696 0.828 - - - 0.828 - - - - - sideroflexin 4 [Source:ZFIN;Acc:ZDB-GENE-050309-187]

There are 321 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA