Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for hmgb3b

Gene Name Gene ID Reads Annotation
hmgb3b ENSDARG00000006408 3442 high mobility group box 3b [Source:ZFIN;Acc:ZDB-GENE-050417-290]










Genes with expression patterns similar to hmgb3b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. hmgb3b ENSDARG00000006408 3442 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 high mobility group box 3b [Source:ZFIN;Acc:ZDB-GENE-050417-290]
2. GPRC5B GPRC5B 897 2.385 - 0.709 - - - 0.857 0.819 - -
3. apex1 ENSDARG00000045843 6345 2.378 0.771 0.885 - - - - 0.722 - - APEX nuclease (multifunctional DNA repair enzyme) 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2761]
4. ppig ENSDARG00000044431 3427 2.272 - 0.792 - - 0.759 0.721 - - - peptidylprolyl isomerase G (cyclophilin G) [Source:ZFIN;Acc:ZDB-GENE-040426-2822]
5. dnajc5ga ENSDARG00000041896 1478 2.234 - 0.765 - - - 0.703 0.766 - - DnaJ (Hsp40) homolog, subfamily C, member 5 gamma a [Source:ZFIN;Acc:ZDB-GENE-030131-1583]
6. ddx39ab ENSDARG00000015111 11619 2.132 0.723 0.701 - - - - 0.708 - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab [Source:ZFIN;Acc:ZDB-GENE-040426-2902]
7. CUL3 CUL3 1133 1.676 - 0.787 - - - 0.889 - - -
8. cct8 ENSDARG00000008243 6843 1.675 - 0.795 - - - - 0.880 - - chaperonin containing TCP1, subunit 8 (theta) [Source:ZFIN;Acc:ZDB-GENE-040426-876]
9. pip5k1ab ENSDARG00000024642 1988 1.673 - 0.802 - - - 0.871 - - - phosphatidylinositol-4-phosphate 5-kinase, type I, alpha, b [Source:ZFIN;Acc:ZDB-GENE-041111-123]
10. nudt3a ENSDARG00000016256 2713 1.655 - 0.833 - - - - 0.822 - - nudix (nucleoside diphosphate linked moiety X)-type motif 3a [Source:ZFIN;Acc:ZDB-GENE-040426-792]
11. klhl21 ENSDARG00000039255 2550 1.643 - 0.799 - - - - 0.844 - - kelch-like family member 21 [Source:ZFIN;Acc:ZDB-GENE-040426-2627]
12. optc ENSDARG00000014358 1295 1.643 - 0.745 - - - 0.898 - - - opticin [Source:ZFIN;Acc:ZDB-GENE-030131-1798]
13. timm8b ENSDARG00000055708 7291 1.63 - 0.820 - - - - 0.810 - - translocase of inner mitochondrial membrane 8 homolog B (yeast) [Source:ZFIN;Acc:ZDB-GENE-031019-1]
14. esd ENSDARG00000019496 3192 1.621 - 0.764 - - - - 0.857 - - esterase D/formylglutathione hydrolase [Source:ZFIN;Acc:ZDB-GENE-050417-328]
15. ck2b ck2b 781 1.619 - - - - - 0.849 0.770 - -
16. eef2k ENSDARG00000035835 2906 1.616 - - - - - 0.824 0.792 - - eukaryotic elongation factor 2 kinase [Source:ZFIN;Acc:ZDB-GENE-020916-2]
17. pdlim3b ENSDARG00000014248, ENSDARG00000111275 708 1.616 - 0.715 - - - 0.901 - - - PDZ and LIM domain 3b [Source:ZFIN;Acc:ZDB-GENE-060130-104]
18. lrrc20 ENSDARG00000105018 1970 1.612 - 0.879 - - - - 0.733 - - leucine rich repeat containing 20 [Source:ZFIN;Acc:ZDB-GENE-041114-49]
19. hoxb7a ENSDARG00000056030 1212 1.607 - 0.797 - - - - 0.810 - - homeobox B7a [Source:ZFIN;Acc:ZDB-GENE-000329-2]
20. prep ENSDARG00000057151 3016 1.604 - 0.741 - - - 0.863 - - - prolyl endopeptidase [Source:ZFIN;Acc:ZDB-GENE-050522-14]
21. C2CD2 ENSDARG00000105000 2573 1.603 - - - - 0.741 0.862 - - - C2 calcium-dependent domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-110728-1]
22. osbpl2a ENSDARG00000053804 1883 1.599 - 0.809 - - - - 0.790 - - oxysterol binding protein-like 2a [Source:ZFIN;Acc:ZDB-GENE-091116-46]
23. ehd1b ENSDARG00000014793, ENSDARG00000110243, ENSDARG00000110919 2496 1.599 - 0.834 - - - - 0.765 - - EH-domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2069]
24. trim55b ENSDARG00000058158 586 1.595 - 0.739 - - - 0.856 - - - tripartite motif containing 55b [Source:ZFIN;Acc:ZDB-GENE-060312-37]
25. si:ch211-51c14.1 ENSDARG00000054645, ENSDARG00000110953 2434 1.595 - - - - - 0.890 0.705 - - si:ch211-51c14.1 [Source:ZFIN;Acc:ZDB-GENE-120215-48]
26. si:dkey-13i19.8 ENSDARG00000093058 4617 1.594 - 0.779 - - - 0.815 - - - si:dkey-13i19.8 [Source:ZFIN;Acc:ZDB-GENE-041210-156]
27. ptrhd1 ENSDARG00000016122 2705 1.593 - 0.751 - - - 0.842 - - - peptidyl-tRNA hydrolase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-081110-2]
28. BX649282.1 ENSDARG00000105704 347 1.592 - - - - - 0.857 0.735 - -
29. minos1 ENSDARG00000101619 5273 1.591 - 0.789 - - - - 0.802 - - mitochondrial inner membrane organizing system 1 [Source:ZFIN;Acc:ZDB-GENE-060825-325]
30. ZNF576 ZNF576 1447 1.59 - - - - 0.727 0.863 - - -
31. sars ENSDARG00000008237 3330 1.584 0.738 0.846 - - - - - - - seryl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-040831-1]
32. hapln1a ENSDARG00000089769 12334 1.581 - 0.799 - - - - 0.782 - - hyaluronan and proteoglycan link protein 1a [Source:ZFIN;Acc:ZDB-GENE-050302-175]
33. limch1a ENSDARG00000074275 2981 1.58 - 0.799 - - - - 0.781 - - LIM and calponin homology domains 1a [Source:ZFIN;Acc:ZDB-GENE-090312-153]
34. cyth1a ENSDARG00000005159, ENSDARG00000076742 2796 1.58 - - - - - 0.828 0.752 - - cytohesin 1a [Source:ZFIN;Acc:ZDB-GENE-030131-657]
35. mrpl38 ENSDARG00000039667 1145 1.578 - 0.781 - - - - 0.797 - - mitochondrial ribosomal protein L38 [Source:ZFIN;Acc:ZDB-GENE-040426-2373]
36. ywhag2 ENSDARG00000071658, ENSDARG00000116741 3326 1.577 - 0.772 - - - - 0.805 - - 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-061023-2]
37. metap2b_1 ENSDARG00000102571 5507 1.577 - - - - - 0.808 0.769 - - methionyl aminopeptidase 2b [Source:ZFIN;Acc:ZDB-GENE-030131-2172]
38. rab5if ENSDARG00000074790 8807 1.576 - 0.849 - - - - 0.727 - - RAB5 interacting factor [Source:ZFIN;Acc:ZDB-GENE-030131-5938]
39. vamp3 ENSDARG00000070161 6396 1.571 - 0.760 - - - 0.811 - - - vesicle-associated membrane protein 3 (cellubrevin) [Source:ZFIN;Acc:ZDB-GENE-040625-45]
40. EEF1E1 ENSDARG00000071774 3806 1.571 - 0.749 - - - 0.822 - - - eukaryotic translation elongation factor 1 epsilon 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4949]
41. lsm6 ENSDARG00000036995 4377 1.568 - - - - - 0.715 0.853 - - LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:ZFIN;Acc:ZDB-GENE-040625-50]
42. sh3rf1 ENSDARG00000070470 1463 1.567 - 0.771 - - - 0.796 - - - SH3 domain containing ring finger 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6288]
43. MRPL21 ENSDARG00000003846 3244 1.567 0.701 0.866 - - - - - - - mitochondrial ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-061027-183]
44. eno3 ENSDARG00000039007 11355 1.566 - 0.865 - - - - 0.701 - - enolase 3, (beta, muscle) [Source:ZFIN;Acc:ZDB-GENE-031006-5]
45. FSD2 518 1.562 - 0.729 - - - 0.833 - - - fibronectin type III and SPRY domain containing 2
46. eif2b4 ENSDARG00000014004 2213 1.562 - 0.730 - - - 0.832 - - - eukaryotic translation initiation factor 2B, subunit 4 delta [Source:ZFIN;Acc:ZDB-GENE-030131-955]
47. sf3a3 ENSDARG00000100114 4511 1.558 - - - - - 0.850 0.708 - - splicing factor 3a, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040908-1]
48. desi2 ENSDARG00000004460 1593 1.556 - 0.820 - - - - 0.736 - - desumoylating isopeptidase 2 [Source:ZFIN;Acc:ZDB-GENE-040801-39]
49. hs2st1a ENSDARG00000099478 864 1.549 - 0.710 - - - - 0.839 - - heparan sulfate 2-O-sulfotransferase 1a [Source:ZFIN;Acc:ZDB-GENE-070112-2312]
50. rgmd ENSDARG00000034013, ENSDARG00000111872 4752 1.543 - 0.740 - - - - 0.803 - - RGM domain family, member D [Source:ZFIN;Acc:ZDB-GENE-030131-561]
51. ywhae1 ENSDARG00000006399, ENSDARG00000109636, ENSDARG00000109789 13364 1.539 - - - - 0.723 0.816 - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-030131-779]
52. acap3a ENSDARG00000075990 9652 1.538 0.703 - - - - - 0.835 - - ArfGAP with coiled-coil, ankyrin repeat and PH domains 3a [Source:ZFIN;Acc:ZDB-GENE-030131-1711]
53. chrna1 ENSDARG00000009021 2931 1.537 - 0.723 - - - - 0.814 - - cholinergic receptor, nicotinic, alpha 1 (muscle) [Source:ZFIN;Acc:ZDB-GENE-980526-137]
54. CR388002.1 CR388002.1 1998 1.537 - 0.725 - - - - 0.812 - -
55. alg3 ENSDARG00000053155 1843 1.536 - 0.721 - - - - 0.815 - - asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase) [Source:ZFIN;Acc:ZDB-GENE-050522-334]
56. surf4 ENSDARG00000104647 4203 1.535 - 0.731 - - - 0.804 - - - surfeit gene 4 [Source:ZFIN;Acc:ZDB-GENE-040426-1426]
57. abce1 ENSDARG00000007216 7502 1.534 - - - - - 0.772 0.762 - - ATP-binding cassette, sub-family E (OABP), member 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1995]
58. lrpprc ENSDARG00000043970 3847 1.533 - 0.787 - - - - 0.746 - - leucine-rich pentatricopeptide repeat containing [Source:ZFIN;Acc:ZDB-GENE-030131-7887]
59. pcmt ENSDARG00000015201 5132 1.533 - 0.719 - - - - 0.814 - - protein-L-isoaspartate (D-aspartate) O-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-990415-134]
60. capza1b ENSDARG00000056090, ENSDARG00000109842, ENSDARG00000110402 12199 1.53 - 0.741 - - - - 0.789 - - capping actin protein of muscle Z-line subunit alpha 1b [Source:ZFIN;Acc:ZDB-GENE-031002-24]
61. cdc20 ENSDARG00000100741 3264 1.529 - - - - 0.722 0.807 - - - cell division cycle 20 homolog [Source:ZFIN;Acc:ZDB-GENE-040426-2044]
62. nr1d2b ENSDARG00000009594 1144 1.528 - 0.706 - - - 0.822 - - - nuclear receptor subfamily 1, group D, member 2b [Source:ZFIN;Acc:ZDB-GENE-990415-244]
63. tomm40l ENSDARG00000036721 1714 1.527 0.700 0.827 - - - - - - - translocase of outer mitochondrial membrane 40 homolog, like [Source:ZFIN;Acc:ZDB-GENE-040426-2319]
64. pfdn5 ENSDARG00000035043, ENSDARG00000109218, ENSDARG00000110370, ENSDARG00000113603 7566 1.525 - 0.755 - - - - 0.770 - - prefoldin 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6858]
65. tns1 tns1 5891 1.524 - - - - - 0.821 0.703 - -
66. vat1 ENSDARG00000056481, ENSDARG00000111382 7389 1.524 - 0.807 - - - - 0.717 - - vesicle amine transport 1 [Source:ZFIN;Acc:ZDB-GENE-030616-178]
67. six1b ENSDARG00000026473 1908 1.522 - 0.806 - - - - 0.716 - - SIX homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2308]
68. MYOT ENSDARG00000076312 1791 1.522 - 0.772 - - - - 0.750 - - myotilin [Source:ZFIN;Acc:ZDB-GENE-110411-129]
69. ppm1la ENSDARG00000063218 2142 1.522 - 0.744 - - - - 0.778 - - protein phosphatase, Mg2+/Mn2+ dependent, 1La [Source:ZFIN;Acc:ZDB-GENE-061103-118]
70. ndufs1 ENSDARG00000028546 5795 1.522 - - - - - 0.778 0.744 - - NADH:ubiquinone oxidoreductase core subunit S1 [Source:ZFIN;Acc:ZDB-GENE-030131-478]
71. ntmt1 ENSDARG00000022399 5779 1.519 - 0.765 - - - - 0.754 - - N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2055]
72. rnf2 ENSDARG00000010381 3427 1.518 0.809 - - - - - 0.709 - - ring finger protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5243]
73. eef1db ENSDARG00000030053 5185 1.517 - - - - - 0.743 0.774 - - eukaryotic translation elongation factor 1 delta b (guanine nucleotide exchange protein) [Source:ZFIN;Acc:ZDB-GENE-030131-6544]
74. eif3m ENSDARG00000013931 8117 1.513 0.706 - - - - - 0.807 - - eukaryotic translation initiation factor 3, subunit M [Source:ZFIN;Acc:ZDB-GENE-040426-2643]
75. enpp1 ENSDARG00000005789 3267 1.513 - - - - - 0.758 0.755 - - ectonucleotide pyrophosphatase/phosphodiesterase 1 [Source:ZFIN;Acc:ZDB-GENE-040724-172]
76. gypc ENSDARG00000041546 1487 1.512 - 0.753 - - - - 0.759 - - glycophorin C (Gerbich blood group) [Source:ZFIN;Acc:ZDB-GENE-030131-7930]
77. znf106a ENSDARG00000016651 6049 1.51 - 0.782 - - - - 0.728 - - zinc finger protein 106a [Source:ZFIN;Acc:ZDB-GENE-040718-21]
78. mrps18b ENSDARG00000007065 2121 1.509 - 0.784 - - - - 0.725 - - mitochondrial ribosomal protein S18B [Source:ZFIN;Acc:ZDB-GENE-050417-278]
79. tmsb ENSDARG00000054911 6411 1.508 - 0.792 - - - - 0.716 - - thymosin, beta [Source:ZFIN;Acc:ZDB-GENE-050307-5]
80. dyrk2 ENSDARG00000094646 2163 1.507 - 0.764 - - - - 0.743 - - dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2804]
81. ppp1r3cb ENSDARG00000014554 2507 1.507 - 0.755 - - - - 0.752 - - protein phosphatase 1, regulatory subunit 3Cb [Source:ZFIN;Acc:ZDB-GENE-040426-1733]
82. gstm gstm 4064 1.506 - - - - - 0.796 0.710 - -
83. kpnb3 ENSDARG00000040245 7967 1.505 - 0.748 - - - - 0.757 - - karyopherin (importin) beta 3 [Source:ZFIN;Acc:ZDB-GENE-030424-2]
84. tm7sf3 ENSDARG00000093658 754 1.501 - 0.703 - - - 0.798 - - - transmembrane 7 superfamily member 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1770]
85. egln1 egln1 3746 1.5 - 0.792 - - - - 0.708 - -
86. CABZ01080568.2 CABZ01080568.2 2137 1.499 - 0.774 - - 0.725 - - - -
87. sypl2a ENSDARG00000055307, ENSDARG00000115972 7103 1.498 - 0.779 - - - 0.719 - - - synaptophysin-like 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1434]
88. mtch2 ENSDARG00000019732 3948 1.497 - 0.747 - - - 0.750 - - - mitochondrial carrier homolog 2 [Source:ZFIN;Acc:ZDB-GENE-991008-9]
89. WU:FC32F04 WU:FC32F04 2525 1.497 - 0.742 - - - 0.755 - - -
90. kmt2cb ENSDARG00000075560 4816 1.496 - 0.757 - 0.739 - - - - - lysine (K)-specific methyltransferase 2Cb [Source:ZFIN;Acc:ZDB-GENE-070705-340]
91. PHB2 PHB2 3755 1.495 - 0.792 - - - - 0.703 - -
92. nrn1a ENSDARG00000071860 1311 1.494 - - - - 0.724 - - 0.770 - neuritin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-212]
93. pygmb ENSDARG00000013317 5454 1.494 - 0.735 - - - - 0.759 - - phosphorylase, glycogen, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-1206]
94. meaf6 ENSDARG00000101216 6865 1.494 - 0.746 0.748 - - - - - - MYST/Esa1-associated factor 6 [Source:ZFIN;Acc:ZDB-GENE-040808-12]
95. txlnbb ENSDARG00000076241 6396 1.494 - 0.721 - - - - 0.773 - - taxilin beta b [Source:ZFIN;Acc:ZDB-GENE-070424-77]
96. dnajc19 ENSDARG00000044420 1756 1.491 - 0.778 - - - - 0.713 - - DnaJ (Hsp40) homolog, subfamily C, member 19 [Source:ZFIN;Acc:ZDB-GENE-040426-1730]
97. rac1 rac1 7341 1.488 0.703 - - - - - 0.785 - -
98. NFATC3 NFATC3 1712 1.488 - 0.727 - - - 0.761 - - -
99. GPR161 ENSDARG00000055659 1067 1.487 - 0.712 - - - 0.775 - - - G protein-coupled receptor 161 [Source:ZFIN;Acc:ZDB-GENE-030616-58]
100. LPHN2 LPHN2 1971 1.486 - - - 0.757 0.729 - - - -

There are 1680 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA