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Results for hmgb3a

Gene Name Gene ID Reads Annotation
hmgb3a ENSDARG00000056725 15668 high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]










Genes with expression patterns similar to hmgb3a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. hmgb3a ENSDARG00000056725 15668 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
2. hnrnpub ENSDARG00000004735 16496 4.323 0.880 - - - 0.743 0.859 0.944 - 0.897 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
3. tuba1c ENSDARG00000055216 8384 4.274 0.883 - - - 0.734 0.922 0.843 - 0.892 tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
4. fam60al 2846 4.242 0.856 - - - 0.759 0.901 0.877 - 0.849 family with sequence similarity 60, member A, like
5. smarca5 ENSDARG00000052348 15433 4.235 - 0.816 0.886 - - 0.876 0.761 - 0.896 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 [Source:ZFIN;Acc:ZDB-GENE-021125-1]
6. gpm6aa ENSDARG00000055455, ENSDARG00000110942 9156 4.133 0.747 - - - 0.718 - 0.859 0.928 0.881 glycoprotein M6Aa [Source:ZFIN;Acc:ZDB-GENE-030710-7]
7. fzd3a ENSDARG00000021664 1958 4.087 0.793 - - - - 0.771 0.837 0.905 0.781 frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
8. cd99l2 ENSDARG00000056722 5036 4.079 0.832 - - - 0.734 0.859 0.849 - 0.805 CD99 molecule-like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1986]
9. ANKRD11 ENSDARG00000051886 10024 4.045 0.728 0.765 - 0.950 - 0.826 0.776 - - ankyrin repeat domain 11 [Source:ZFIN;Acc:ZDB-GENE-030131-3932]
10. khsrp ENSDARG00000026489 15738 4.043 0.810 - 0.703 - - 0.887 0.802 - 0.841 KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
11. vdac1 ENSDARG00000045132 8051 3.998 0.899 - - - 0.716 0.889 0.739 - 0.755 voltage-dependent anion channel 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6514]
12. Sep-03 Sep-03 1124 3.992 0.721 - - - - 0.859 0.796 0.838 0.778
13. MKI67 ENSDARG00000091150 11038 3.937 0.750 - - - - 0.744 0.713 0.882 0.848 marker of proliferation Ki-67 [Source:ZFIN;Acc:ZDB-GENE-030131-9771]
14. smc1al ENSDARG00000058203 8838 3.896 0.762 - - - - 0.811 0.728 0.720 0.875 structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]
15. pcdh19 ENSDARG00000034344 2378 3.829 - - 0.795 - 0.721 0.758 0.749 - 0.806 protocadherin 19 [Source:ZFIN;Acc:ZDB-GENE-030131-4218]
16. srsf6b ENSDARG00000016783 9926 3.69 0.704 - - - 0.727 0.823 0.721 - 0.715 serine/arginine-rich splicing factor 6b [Source:ZFIN;Acc:ZDB-GENE-041219-1]
17. nova2 ENSDARG00000017673 7685 3.573 0.857 - - - - 0.944 0.865 - 0.907 neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
18. nadl1.1 1200 3.569 0.818 - - - - 0.959 0.848 0.944 - neural adhesion molecule L1.1, transcript variant X1
19. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 3.527 0.863 - - - - 0.939 0.875 - 0.850 methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
20. gnao1a ENSDARG00000016676 8184 3.483 0.859 - - 0.891 - - 0.886 - 0.847 guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O, a [Source:ZFIN;Acc:ZDB-GENE-040426-1757]
21. tmem35 ENSDARG00000052567 5685 3.474 0.874 - - - - 0.918 0.860 - 0.822 transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
22. btg2 ENSDARG00000020298 6616 3.462 - 0.825 - - - 0.925 0.854 0.858 - B-cell translocation gene 2 [Source:ZFIN;Acc:ZDB-GENE-000210-15]
23. dpysl3 ENSDARG00000002587 4381 3.438 0.832 - - - - 0.890 0.850 - 0.866 dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
24. marcksl1b ENSDARG00000035715 37390 3.435 0.858 - 0.804 - - - - 0.898 0.875 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
25. plp1a ENSDARG00000103732 3544 3.41 0.851 - - - - 0.899 0.865 - 0.795 proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
26. celf3a ENSDARG00000034668 2432 3.405 - - - 0.818 - 0.963 0.799 - 0.825 cugbp, Elav-like family member 3a [Source:ZFIN;Acc:ZDB-GENE-000501-2]
27. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 3.403 0.866 - - - - 0.921 0.819 - 0.797 cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
28. lfng ENSDARG00000037879 11783 3.398 0.875 0.701 - - - 0.955 - - 0.867 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:ZFIN;Acc:ZDB-GENE-980605-16]
29. tubb5 ENSDARG00000037997 18691 3.395 0.836 - 0.706 - - - 0.894 0.959 - tubulin, beta 5 [Source:ZFIN;Acc:ZDB-GENE-031110-4]
30. bri3bp ENSDARG00000010108 6295 3.393 - - - - - 0.916 0.805 0.881 0.791 bri3 binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-5254]
31. slc1a2b ENSDARG00000102453 3136 3.393 0.778 - - - - 0.861 0.790 0.964 - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
32. myt1b ENSDARG00000102879 5411 3.391 0.768 - - - - 0.959 0.825 - 0.839 myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
33. stx1b ENSDARG00000000503 2724 3.388 0.835 - - - - 0.900 0.826 0.827 - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
34. sypa ENSDARG00000042974, ENSDARG00000110528 3217 3.388 0.832 - - - - 0.880 0.847 0.829 - synaptophysin a [Source:ZFIN;Acc:ZDB-GENE-031104-2]
35. pax6a ENSDARG00000103379 3061 3.388 0.791 - - 0.892 - 0.923 0.782 - - paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
36. her4.2_1 ENSDARG00000056729, ENSDARG00000094426 2383 3.383 - - - - - 0.776 0.838 0.956 0.813 hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
37. gap43 ENSDARG00000099744 4114 3.381 0.829 - - - - 0.908 0.865 - 0.779 growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
38. hdac1 ENSDARG00000015427 19804 3.378 0.837 - - 0.825 - 0.861 - - 0.855 histone deacetylase 1 [Source:ZFIN;Acc:ZDB-GENE-020419-32]
39. hmgb1b ENSDARG00000030479 10398 3.375 0.822 0.709 - - - 0.915 0.929 - - high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]
40. tmsb ENSDARG00000054911 6411 3.364 0.769 - - - - 0.929 0.818 - 0.848 thymosin, beta [Source:ZFIN;Acc:ZDB-GENE-050307-5]
41. ebf3 ebf3 4238 3.364 0.845 - - - - - 0.742 0.948 0.829
42. nrarpb ENSDARG00000018958 6225 3.36 0.776 - - - - 0.946 0.872 - 0.766 NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
43. tox ENSDARG00000032317 9126 3.358 0.821 - - - - 0.843 0.888 - 0.806 thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]
44. rbb4 rbb4 15541 3.356 - - - 0.893 - 0.707 0.852 - 0.904
45. CABZ01111990.1 CABZ01111990.1 4374 3.355 0.839 - - - - 0.861 0.858 - 0.797
46. rrm1 ENSDARG00000014017 7296 3.351 0.825 - - - - - 0.825 0.864 0.837 ribonucleotide reductase M1 polypeptide [Source:ZFIN;Acc:ZDB-GENE-990415-247]
47. mdkb ENSDARG00000020708 5393 3.344 0.813 - - - - 0.814 0.899 - 0.818 midkine b [Source:ZFIN;Acc:ZDB-GENE-010131-6]
48. sept5a ENSDARG00000013843 1206 3.343 0.801 - - 0.801 - 0.888 0.853 - - septin 5a [Source:ZFIN;Acc:ZDB-GENE-030131-7868]
49. mllt11 ENSDARG00000071026 2518 3.34 0.863 - - - - 0.915 0.815 - 0.747 MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
50. dnajc5aa ENSDARG00000042948 2885 3.337 0.801 - - - - 0.865 0.850 0.821 - DnaJ (Hsp40) homolog, subfamily C, member 5aa [Source:ZFIN;Acc:ZDB-GENE-031113-20]
51. hmgb2b ENSDARG00000053990 11519 3.336 0.788 0.813 - - - - 0.914 - 0.821 high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]
52. wu:fb17g07 wu:fb17g07 10567 3.331 0.841 - - - - 0.821 0.776 - 0.893
53. dpysl5a ENSDARG00000011141 1827 3.33 0.833 - - - - 0.847 0.828 - 0.822 dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
54. hnrnpa0b ENSDARG00000036162, ENSDARG00000112653 27740 3.329 - - - 0.830 - 0.745 - 0.834 0.920 heterogeneous nuclear ribonucleoprotein A0b [Source:ZFIN;Acc:ZDB-GENE-030131-6154]
55. cadm3 ENSDARG00000057013 1545 3.326 0.743 - - - - 0.902 0.746 0.935 - cell adhesion molecule 3 [Source:ZFIN;Acc:ZDB-GENE-060512-196]
56. BX957337.1 BX957337.1 1685 3.323 0.725 - - - - 0.880 0.807 0.911 -
57. sumo3a ENSDARG00000028119 13447 3.323 0.733 - - - - 0.901 0.820 - 0.869 small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
58. stmn1b ENSDARG00000033655 9491 3.314 0.845 - - - - 0.799 0.849 - 0.821 stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
59. dla ENSDARG00000010791 9281 3.309 0.850 - 0.733 - - - 0.862 - 0.864 deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
60. tmpob ENSDARG00000022978 8121 3.294 0.769 - - - - 0.816 0.859 - 0.850 thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
61. dpysl2b ENSDARG00000032083, ENSDARG00000109782 3487 3.289 0.724 - - - - 0.894 0.884 - 0.787 dihydropyrimidinase-like 2b [Source:ZFIN;Acc:ZDB-GENE-031105-1]
62. si:ch73-21g5.7 ENSDARG00000093156 9412 3.28 0.811 - - - - 0.842 0.864 - 0.763 si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
63. sox19b ENSDARG00000040266 532 3.274 0.762 - - - - 0.804 0.830 0.878 - SRY (sex determining region Y)-box 19b [Source:ZFIN;Acc:ZDB-GENE-010111-1]
64. her4.1 ENSDARG00000056732 1264 3.274 - - - - 0.740 0.886 0.863 - 0.785 hairy-related 4, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-980526-521]
65. gipc1 ENSDARG00000104483 2913 3.273 - - - - 0.736 0.826 0.780 0.931 - GIPC PDZ domain containing family, member 1 [Source:ZFIN;Acc:ZDB-GENE-060726-1]
66. ptbp2b ENSDARG00000015901 2458 3.257 0.770 - - - - 0.825 0.892 - 0.770 polypyrimidine tract binding protein 2b [Source:ZFIN;Acc:ZDB-GENE-060810-49]
67. nrarpa ENSDARG00000091419, ENSDARG00000111485 7867 3.245 0.836 - - - - 0.778 0.809 - 0.822 NOTCH regulated ankyrin repeat protein a [Source:ZFIN;Acc:ZDB-GENE-030515-6]
68. hmp19 2554 3.245 0.752 - - - - 0.898 0.855 - 0.740 HMP19 protein
69. aplp1 ENSDARG00000098368 2317 3.243 0.780 - - - - 0.895 - 0.833 0.735 amyloid beta (A4) precursor-like protein 1 [Source:ZFIN;Acc:ZDB-GENE-040319-1]
70. pou3f3a ENSDARG00000042032 2835 3.241 0.760 - - - - 0.886 0.891 - 0.704 POU class 3 homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-980526-220]
71. whsc1l1 8544 3.239 0.709 - - - - 0.783 0.817 - 0.930 Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant X2
72. msi1 ENSDARG00000010710 2634 3.237 0.712 - - - - 0.944 0.822 - 0.759 musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]
73. smarcd1 ENSDARG00000019004 6028 3.236 - - - - 0.738 0.762 0.842 - 0.894 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1835]
74. vamp2 ENSDARG00000056877 2158 3.225 0.829 - - - - 0.739 - 0.907 0.750 vesicle-associated membrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8225]
75. IM:7163548 IM:7163548 6540 3.222 - - - - - 0.808 0.770 0.851 0.793
76. slc17a6b ENSDARG00000041150 823 3.217 0.732 - - - - 0.872 0.808 0.805 - solute carrier family 17 (vesicular glutamate transporter), member 6b [Source:ZFIN;Acc:ZDB-GENE-030616-554]
77. nbeaa ENSDARG00000070080 862 3.21 0.847 - - - - 0.767 0.805 - 0.791 neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
78. ppm1g ENSDARG00000075559 6516 3.206 0.762 - 0.706 - - - - 0.909 0.829 protein phosphatase, Mg2+/Mn2+ dependent, 1G [Source:ZFIN;Acc:ZDB-GENE-030425-4]
79. myef2 ENSDARG00000059398 6050 3.202 - 0.822 - - 0.761 - - 0.885 0.734 myelin expression factor 2 [Source:ZFIN;Acc:ZDB-GENE-051120-114]
80. dnaja2l ENSDARG00000010745 2367 3.196 - - - - - 0.754 0.728 0.927 0.787 DnaJ (Hsp40) homolog, subfamily A, member 2, like [Source:ZFIN;Acc:ZDB-GENE-030131-2884]
81. lypla2 ENSDARG00000053656 8971 3.184 - - - - - 0.813 0.777 0.760 0.834 lysophospholipase II [Source:ZFIN;Acc:ZDB-GENE-040426-1715]
82. cspg5a ENSDARG00000069981 1699 3.179 0.800 - - - - 0.722 0.871 - 0.786 chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
83. ddx39ab ENSDARG00000015111 11619 3.178 - 0.748 - - - 0.702 0.883 - 0.845 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab [Source:ZFIN;Acc:ZDB-GENE-040426-2902]
84. nono ENSDARG00000020482, ENSDARG00000115783 12482 3.171 0.746 - 0.767 - - 0.867 - - 0.791 non-POU domain containing, octamer-binding [Source:ZFIN;Acc:ZDB-GENE-030131-713]
85. tnika ENSDARG00000056218 728 3.168 0.746 - - - - 0.707 0.819 0.896 - TRAF2 and NCK interacting kinase a [Source:ZFIN;Acc:ZDB-GENE-030131-3767]
86. nrn1a ENSDARG00000071860 1311 3.163 0.774 - - - - 0.835 0.842 - 0.712 neuritin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-212]
87. bcl11ab ENSDARG00000063153 3032 3.163 - - - - - 0.820 0.739 0.771 0.833 B cell CLL/lymphoma 11Ab [Source:ZFIN;Acc:ZDB-GENE-061009-4]
88. uba1 ENSDARG00000037559 11579 3.163 0.744 - - - 0.733 0.848 0.838 - - ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
89. zic4 ENSDARG00000031307 1228 3.156 0.757 - - 0.799 - 0.832 0.768 - - zic family member 4 [Source:ZFIN;Acc:ZDB-GENE-040622-4]
90. fyna ENSDARG00000011370 1679 3.148 0.733 - - - - 0.872 0.808 - 0.735 FYN proto-oncogene, Src family tyrosine kinase a [Source:ZFIN;Acc:ZDB-GENE-030903-5]
91. npm1b ENSDARG00000037675 5448 3.144 0.733 - - - - 0.869 0.722 - 0.820 nucleophosmin 1b [Source:ZFIN;Acc:ZDB-GENE-080723-7]
92. nhlh2 ENSDARG00000025495 1860 3.122 - - - - - 0.811 0.871 0.713 0.727 nescient helix loop helix 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1809]
93. FAM168B ENSDARG00000101733, ENSDARG00000113953, ENSDARG00000115746 2175 3.116 0.766 - - - - 0.711 0.867 - 0.772 family with sequence similarity 168, member B [Source:ZFIN;Acc:ZDB-GENE-060929-180]
94. zic1 ENSDARG00000015567 2520 3.113 0.807 - - - 0.753 0.778 0.775 - - zic family member 1 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-000208-4]
95. tuba2 ENSDARG00000045014 1490 3.111 0.771 - - - - 0.800 0.817 - 0.723 tubulin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1970]
96. notch3 ENSDARG00000052139 15033 3.101 0.756 - 0.706 - - 0.924 - 0.715 - notch 3 [Source:ZFIN;Acc:ZDB-GENE-000329-5]
97. Sep-06 Sep-06 5465 3.101 - 0.766 - - - - 0.729 0.904 0.702
98. tle2 5014 3.098 0.802 - - - 0.714 0.726 0.856 - - transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila), transcript variant X4
99. zswim5 ENSDARG00000055900 4243 3.094 0.783 - - - - 0.717 0.740 - 0.854 zinc finger, SWIM-type containing 5 [Source:ZFIN;Acc:ZDB-GENE-030925-30]
100. chd7 ENSDARG00000075211 12085 3.094 0.792 - - - 0.705 0.716 0.881 - - chromodomain helicase DNA binding protein 7 [Source:ZFIN;Acc:ZDB-GENE-070912-179]

There are 2456 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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