Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for hmgb1b

Gene Name Gene ID Reads Annotation
hmgb1b ENSDARG00000030479 10398 high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]










Genes with expression patterns similar to hmgb1b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. hmgb1b ENSDARG00000030479 10398 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]
2. tox ENSDARG00000032317 9126 4.534 0.817 - - 0.984 - 0.918 0.935 0.880 - thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]
3. AGO1 ENSDARG00000092644 4521 4.347 0.732 - 0.811 0.984 - 0.888 0.932 - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
4. ZFHX3 ENSDARG00000103057 7759 4.142 0.718 - 0.813 - 0.790 0.887 0.934 - - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
5. pcdh1gc5 ENSDARG00000104826 10052 4.11 0.732 - 0.804 - - 0.899 0.940 0.735 - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
6. stmn1b ENSDARG00000033655 9491 4.058 0.713 - 0.735 - - 0.776 0.930 0.904 - stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
7. ENDOD1_5 ENDOD1_5 8723 4.022 0.782 - 0.860 - - 0.849 - 0.706 0.825
8. ctnnd2b ENSDARG00000003779 964 3.971 0.764 - 0.771 - 0.743 0.761 0.932 - - catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
9. tuba1c ENSDARG00000055216 8384 3.64 0.819 - - 0.991 - 0.899 0.931 - - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
10. nova2 ENSDARG00000017673 7685 3.618 0.850 - - - 0.905 0.926 0.937 - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
11. tmpob ENSDARG00000022978 8121 3.474 - - 0.882 - - 0.887 0.892 0.813 - thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
12. si:ch73-21g5.7 ENSDARG00000093156 9412 3.436 0.827 - 0.835 - - 0.838 0.936 - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
13. nrarpb ENSDARG00000018958 6225 3.408 0.789 - - - - 0.896 0.945 0.778 - NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
14. sox19a ENSDARG00000010770, ENSDARG00000110497 4683 3.394 0.747 - 0.793 - - 0.922 0.932 - - SRY (sex determining region Y)-box 19a [Source:ZFIN;Acc:ZDB-GENE-980526-102]
15. hmgb3a ENSDARG00000056725 15668 3.375 0.822 0.709 - - - 0.915 0.929 - - high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
16. CABZ01111990.1 CABZ01111990.1 4374 3.351 0.845 - 0.776 - - 0.800 0.930 - -
17. TNRC6C_2 TNRC6C_2 2444 3.345 - - 0.777 - - 0.898 0.867 0.803 -
18. fzd3a ENSDARG00000021664 1958 3.331 0.799 - 0.859 - - 0.775 0.898 - - frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
19. fam60al 2846 3.33 0.813 - 0.809 - - 0.846 0.862 - - family with sequence similarity 60, member A, like
20. EFCC1 ENSDARG00000077826 1359 3.329 0.809 - 0.713 - - 0.899 0.908 - - EF-hand and coiled-coil domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-120813-3]
21. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 3.314 0.743 - 0.817 - - 0.858 0.896 - - cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
22. epha4b ENSDARG00000011600 3110 3.313 0.811 0.725 - - - 0.872 0.905 - - eph receptor A4b [Source:ZFIN;Acc:ZDB-GENE-030826-6]
23. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 3.31 0.816 - - - - 0.888 0.887 0.719 - methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
24. npas3b npas3b 1446 3.297 0.715 - 0.814 - - 0.849 0.919 - -
25. smc1al ENSDARG00000058203 8838 3.295 - - 0.831 0.988 - 0.772 0.704 - - structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]
26. smarce1 ENSDARG00000016871 9628 3.289 - - - - 0.823 0.828 0.816 - 0.822 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-967]
27. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 3.243 0.781 - 0.703 - - 0.865 0.894 - - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
28. zgc:77262 ENSDARG00000044545 5563 3.243 - - 0.765 - 0.852 - 0.754 0.872 - zgc:77262 [Source:ZFIN;Acc:ZDB-GENE-040426-1811]
29. SSBP4 ENSDARG00000056483 5156 3.239 - - 0.758 - - 0.754 0.892 - 0.835 single stranded DNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-469]
30. caprin1a ENSDARG00000009346, ENSDARG00000112212 9675 3.226 0.727 - 0.851 - - 0.832 - 0.816 - cell cycle associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-226]
31. ptprnb ENSDARG00000077047 2743 3.222 0.801 - 0.760 - - 0.840 0.821 - - protein tyrosine phosphatase, receptor type, Nb [Source:ZFIN;Acc:ZDB-GENE-100505-1]
32. CR936437.1 CR936437.1 6465 3.218 0.730 - 0.827 - - - 0.769 0.892 -
33. dpysl3 ENSDARG00000002587 4381 3.217 0.706 - - - 0.731 0.856 0.924 - - dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
34. dpysl5a ENSDARG00000011141 1827 3.214 0.755 - 0.760 - - 0.783 0.916 - - dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
35. hdac1 ENSDARG00000015427 19804 3.199 0.721 - 0.845 - - 0.790 - 0.843 - histone deacetylase 1 [Source:ZFIN;Acc:ZDB-GENE-020419-32]
36. khsrp ENSDARG00000026489 15738 3.196 0.799 - - - - 0.816 0.827 0.754 - KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
37. clstn1 ENSDARG00000031720 5286 3.195 0.757 - - - - 0.780 0.888 0.770 - calsyntenin 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1064]
38. her4.3 ENSDARG00000070770 613 3.182 - - - - 0.717 0.805 0.916 0.744 - hairy-related 4, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-081030-7]
39. C8H1orf106 C8H1orf106 2690 3.149 0.722 - 0.752 - - 0.802 0.873 - -
40. fabp7a ENSDARG00000007697 5211 3.126 - - 0.717 - - 0.712 0.782 0.915 - fatty acid binding protein 7, brain, a [Source:ZFIN;Acc:ZDB-GENE-000627-1]
41. snrpf ENSDARG00000105037 10241 3.083 0.727 - - - 0.802 - 0.781 0.773 - small nuclear ribonucleoprotein polypeptide F [Source:ZFIN;Acc:ZDB-GENE-040930-9]
42. srsf3a ENSDARG00000025397, ENSDARG00000100815 11622 3.066 - - 0.775 - 0.859 0.717 0.715 - - serine/arginine-rich splicing factor 3a [Source:ZFIN;Acc:ZDB-GENE-030616-631]
43. hoxc4a ENSDARG00000070338 1382 3.034 0.722 - - - 0.726 0.810 0.776 - - homeobox C4a [Source:ZFIN;Acc:ZDB-GENE-990415-112]
44. ptpro ENSDARG00000100422, ENSDARG00000110470 1850 3.014 0.719 - 0.838 - 0.719 0.738 - - - protein tyrosine phosphatase, receptor type, O [Source:ZFIN;Acc:ZDB-GENE-070424-54]
45. ier5 ENSDARG00000009881, ENSDARG00000111680 11432 2.949 - 0.764 0.739 - - 0.714 0.732 - - immediate early response 5 [Source:ZFIN;Acc:ZDB-GENE-030616-127]
46. gap43 ENSDARG00000099744 4114 2.761 - - - 0.977 - 0.878 0.906 - - growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
47. msi1 ENSDARG00000010710 2634 2.745 - - 0.914 - - 0.924 0.907 - - musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]
48. ADAMTS3 ENSDARG00000060127 2839 2.689 - - - 0.974 - 0.801 0.914 - - ADAM metallopeptidase with thrombospondin type 1 motif, 3 [Source:ZFIN;Acc:ZDB-GENE-110223-1]
49. slc18a3a ENSDARG00000006356 1285 2.686 0.807 - - - - 0.938 0.941 - - solute carrier family 18 (vesicular acetylcholine transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-060929-990]
50. gfap ENSDARG00000025301 5584 2.684 0.821 - - - - 0.931 0.932 - - glial fibrillary acidic protein [Source:ZFIN;Acc:ZDB-GENE-990914-3]
51. tmem35 ENSDARG00000052567 5685 2.675 - - - - - 0.869 0.918 0.888 - transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
52. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 2.652 0.775 - - - - 0.941 0.936 - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
53. nadl1.1 1200 2.639 0.804 - - - - 0.902 0.933 - - neural adhesion molecule L1.1, transcript variant X1
54. nes ENSDARG00000088805 2710 2.637 0.806 - - - - 0.901 0.930 - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
55. ctbp1 ENSDARG00000057007, ENSDARG00000115804 5795 2.633 - - 0.884 - - 0.893 0.856 - - C-terminal binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-010130-1]
56. ptprna ENSDARG00000058646 1327 2.623 - - 0.825 - - 0.892 0.906 - - protein tyrosine phosphatase, receptor type, Na [Source:ZFIN;Acc:ZDB-GENE-030131-3511]
57. hoxa9b ENSDARG00000056819 3081 2.607 0.761 - - - - 0.887 0.959 - - homeobox A9b [Source:ZFIN;Acc:ZDB-GENE-000823-2]
58. atp6v0cb ENSDARG00000036577 3472 2.607 0.748 - - - - 0.910 0.949 - - ATPase H+ transporting V0 subunit cb [Source:ZFIN;Acc:ZDB-GENE-030131-4127]
59. st8sia2 ENSDARG00000018788 2183 2.606 - - 0.795 - - 0.873 0.938 - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-020919-4]
60. plp1a ENSDARG00000103732 3544 2.603 0.782 - - - - 0.883 0.938 - - proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
61. dla ENSDARG00000010791 9281 2.591 0.821 - - - 0.828 - 0.942 - - deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
62. dpysl2b ENSDARG00000032083, ENSDARG00000109782 3487 2.589 - - 0.799 - - 0.890 0.900 - - dihydropyrimidinase-like 2b [Source:ZFIN;Acc:ZDB-GENE-031105-1]
63. prpf40a ENSDARG00000058467 6565 2.582 - - - 0.984 0.864 - 0.734 - - PRP40 pre-mRNA processing factor 40 homolog A [Source:ZFIN;Acc:ZDB-GENE-030131-274]
64. vim ENSDARG00000010008 3551 2.576 0.791 - - - - 0.922 0.863 - - vimentin [Source:ZFIN;Acc:ZDB-GENE-011212-3]
65. stx1b ENSDARG00000000503 2724 2.575 0.757 - - - - 0.901 0.917 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
66. myt1b ENSDARG00000102879 5411 2.573 0.739 - - - - 0.938 0.896 - - myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
67. STMN3 ENSDARG00000038465 1009 2.567 0.704 - - - - 0.936 0.927 - - stathmin-like 3 [Source:ZFIN;Acc:ZDB-GENE-081124-2]
68. pou3f3a ENSDARG00000042032 2835 2.567 0.808 - - - - 0.814 0.945 - - POU class 3 homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-980526-220]
69. hmp19 2554 2.566 0.768 - - - - 0.865 0.933 - - HMP19 protein
70. hnrnpub ENSDARG00000004735 16496 2.564 0.736 - - - - 0.924 0.904 - - heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
71. prdm12b ENSDARG00000007430 914 2.564 0.762 - - - - 0.909 0.893 - - PR domain containing 12b [Source:ZFIN;Acc:ZDB-GENE-041114-172]
72. neurog1 ENSDARG00000056130 3924 2.562 0.753 - - - - 0.872 0.937 - - neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]
73. scrt2 ENSDARG00000056175 4331 2.561 - - - - 0.827 0.893 0.841 - - scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
74. syt11a ENSDARG00000057913 1145 2.555 0.777 - - - - 0.844 0.934 - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
75. SEMA7A ENSDARG00000078707 465 2.551 0.739 - - - - 0.918 0.894 - - semaphorin 7A [Source:ZFIN;Acc:ZDB-GENE-030131-3633]
76. hoxb8b ENSDARG00000054025, ENSDARG00000111056 2106 2.548 0.776 - - - - 0.892 0.880 - - homeobox B8b [Source:ZFIN;Acc:ZDB-GENE-980526-291]
77. tle2 5014 2.547 - - - - - 0.874 0.874 0.799 - transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila), transcript variant X4
78. pacsin1b ENSDARG00000042128 1051 2.545 - - - - - 0.925 0.889 0.731 - protein kinase C and casein kinase substrate in neurons 1b [Source:ZFIN;Acc:ZDB-GENE-050913-35]
79. mllt11 ENSDARG00000071026 2518 2.542 0.774 - - - - 0.883 0.885 - - MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
80. eno2 ENSDARG00000014287 2162 2.54 0.760 - - - - 0.851 0.929 - - enolase 2 [Source:ZFIN;Acc:ZDB-GENE-040704-27]
81. grin1a ENSDARG00000027828 1327 2.539 0.788 - - - - 0.843 0.908 - - glutamate receptor, ionotropic, N-methyl D-aspartate 1a [Source:ZFIN;Acc:ZDB-GENE-051202-1]
82. CU928222.1 ENSDARG00000097436 1662 2.537 0.756 - - - - 0.867 0.914 - -
83. tmeff1b ENSDARG00000056740 11253 2.533 - - - - - 0.859 0.922 0.752 - transmembrane protein with EGF-like and two follistatin-like domains 1b [Source:ZFIN;Acc:ZDB-GENE-050706-143]
84. kcnc3a ENSDARG00000055855 1821 2.527 0.749 - - - - 0.870 0.908 - - potassium voltage-gated channel, Shaw-related subfamily, member 3a [Source:ZFIN;Acc:ZDB-GENE-100901-1]
85. cntnap2b ENSDARG00000074558, ENSDARG00000109616, ENSDARG00000116850 559 2.525 - - - - - 0.889 0.920 0.716 - contactin associated protein like 2b [Source:NCBI gene;Acc:563345]
86. nell2b ENSDARG00000062797 854 2.519 0.729 - - - - 0.877 0.913 - - neural EGFL like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-8026]
87. SPOCK1 ENSDARG00000074644 794 2.516 0.760 - - - - 0.821 0.935 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:ZFIN;Acc:ZDB-GENE-110428-1]
88. TUBB8P7_1 TUBB8P7_1 2722 2.515 0.734 - - - - 0.850 0.931 - -
89. sypa ENSDARG00000042974, ENSDARG00000110528 3217 2.51 0.708 - - - - 0.874 0.928 - - synaptophysin a [Source:ZFIN;Acc:ZDB-GENE-031104-2]
90. BX957337.1 BX957337.1 1685 2.508 0.733 - - - - 0.873 0.902 - -
91. pcsk1nl ENSDARG00000076170 1232 2.508 0.746 - - - - 0.826 0.936 - - proprotein convertase subtilisin/kexin type 1 inhibitor, like [Source:ZFIN;Acc:ZDB-GENE-090427-2]
92. islr2 ENSDARG00000051875, ENSDARG00000109523 2288 2.508 0.811 - - - - 0.769 0.928 - - immunoglobulin superfamily containing leucine-rich repeat 2 [Source:ZFIN;Acc:ZDB-GENE-050320-95]
93. tmie ENSDARG00000069423 305 2.502 0.821 - - - - 0.772 0.909 - - transmembrane inner ear [Source:ZFIN;Acc:ZDB-GENE-061207-9]
94. CHL1 CHL1 1553 2.502 0.786 - - - - 0.867 0.849 - -
95. spock3 ENSDARG00000070266, ENSDARG00000110158 934 2.501 0.772 - - - - 0.901 0.828 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 [Source:ZFIN;Acc:ZDB-GENE-090311-24]
96. snap25a ENSDARG00000020609 4537 2.501 0.727 - - - - 0.874 0.900 - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
97. sox2 ENSDARG00000070913 2763 2.498 0.797 - 0.783 - - - 0.918 - - SRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
98. arnt2 ENSDARG00000103697 5731 2.498 - - 0.796 - - 0.840 0.862 - - aryl-hydrocarbon receptor nuclear translocator 2 [Source:ZFIN;Acc:ZDB-GENE-001207-3]
99. C7H4orf48 C7H4orf48 1455 2.498 0.755 - - - - 0.839 0.904 - -
100. UBE2QL1 ENSDARG00000079276 3474 2.494 0.735 - - - - 0.850 0.909 - - ubiquitin-conjugating enzyme E2Q family-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8137]

There are 1897 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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