Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for hmgb1a

Gene Name Gene ID Reads Annotation
hmgb1a ENSDARG00000099175, ENSDARG00000114353 17231 high mobility group box 1a [Source:ZFIN;Acc:ZDB-GENE-030131-341]










Genes with expression patterns similar to hmgb1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. hmgb1a ENSDARG00000099175, ENSDARG00000114353 17231 8 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 high mobility group box 1a [Source:ZFIN;Acc:ZDB-GENE-030131-341]
2. sox3 ENSDARG00000053569 12016 3.187 - - - 0.889 - 0.841 - 0.725 0.732 SRY (sex determining region Y)-box 3 [Source:ZFIN;Acc:ZDB-GENE-980526-333]
3. parp1 ENSDARG00000019529 6787 3.15 - 0.841 - 0.701 - - - 0.739 0.869 poly (ADP-ribose) polymerase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3955]
4. mlf2 ENSDARG00000034616, ENSDARG00000110660 14039 2.644 - 0.780 - - 0.886 0.978 - - - myeloid leukemia factor 2 [Source:ZFIN;Acc:ZDB-GENE-050913-67]
5. marcksa ENSDARG00000004049 2518 2.637 - - - - 0.895 - - 0.823 0.919 myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
6. brd3b ENSDARG00000100129 6387 2.547 - - 0.899 - 0.918 - - - 0.730 bromodomain containing 3b [Source:ZFIN;Acc:ZDB-GENE-030131-5316]
7. wu:fc51f04 wu:fc51f04 7074 2.524 - - - - 0.863 - - 0.786 0.875
8. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 2.511 - - - - 0.894 - - 0.724 0.893 cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
9. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 2.495 - - - - 0.814 - - 0.801 0.880 leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
10. sin3b ENSDARG00000062472 2025 2.489 - - - - 0.890 - - 0.761 0.838 SIN3 transcription regulator family member B [Source:ZFIN;Acc:ZDB-GENE-030131-8264]
11. arnt2 ENSDARG00000103697 5731 2.484 - - - 0.894 - - - 0.807 0.783 aryl-hydrocarbon receptor nuclear translocator 2 [Source:ZFIN;Acc:ZDB-GENE-001207-3]
12. SENP1 SENP1 1122 2.464 - 0.824 - - 0.868 - - - 0.772
13. srsf7a ENSDARG00000035325, ENSDARG00000110705 11788 2.431 - 0.875 - - - - - 0.703 0.853 serine/arginine-rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798]
14. ccdc28b ENSDARG00000011222 528 2.372 - - - - 0.858 - - 0.781 0.733 coiled-coil domain containing 28B [Source:ZFIN;Acc:ZDB-GENE-060208-3]
15. hmgb2b ENSDARG00000053990 11519 2.341 - - 0.703 - - - - 0.727 0.911 high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]
16. nrarpb ENSDARG00000018958 6225 2.319 - - - - 0.789 - - 0.717 0.813 NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
17. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 72444 2.301 - - - 0.724 - - - 0.794 0.783 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
18. eif1b ENSDARG00000012688 34711 1.91 - 0.927 - - - - 0.983 - - eukaryotic translation initiation factor 1B [Source:ZFIN;Acc:ZDB-GENE-030131-956]
19. nucks1a ENSDARG00000078473 28285 1.854 - - - - - - 0.996 0.858 - nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
20. marcksl1b ENSDARG00000035715 37390 1.854 - - - - - - 0.997 - 0.857 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
21. pmp22a ENSDARG00000105223, ENSDARG00000115339 9849 1.85 - 0.895 - - - - 0.955 - - peripheral myelin protein 22a [Source:ZFIN;Acc:ZDB-GENE-030131-6757]
22. pak2a ENSDARG00000068177 8931 1.849 - 0.853 - - - - 0.996 - - p21 protein (Cdc42/Rac)-activated kinase 2a [Source:ZFIN;Acc:ZDB-GENE-021011-2]
23. sipa1l2 ENSDARG00000061640 4545 1.833 - - - - - - 0.997 - 0.836 signal-induced proliferation-associated 1 like 2 [Source:ZFIN;Acc:ZDB-GENE-050208-66]
24. mcm5 ENSDARG00000019507 6407 1.827 - - - - - - 0.994 - 0.833 minichromosome maintenance complex component 5 [Source:ZFIN;Acc:ZDB-GENE-021209-1]
25. nup50 ENSDARG00000017454 4425 1.824 - 0.906 - - 0.918 - - - - nucleoporin 50 [Source:ZFIN;Acc:ZDB-GENE-030131-1689]
26. IGFN1 IGFN1 5030 1.795 - - - - - 0.800 0.995 - -
27. celf3a ENSDARG00000034668 2432 1.787 - - - - - - - 0.856 0.931 cugbp, Elav-like family member 3a [Source:ZFIN;Acc:ZDB-GENE-000501-2]
28. hspa4b ENSDARG00000018989, ENSDARG00000112727, ENSDARG00000116230 7043 1.778 - 0.895 - - 0.883 - - - - heat shock protein 4b [Source:ZFIN;Acc:ZDB-GENE-030131-6018]
29. FAM168B ENSDARG00000101733, ENSDARG00000113953, ENSDARG00000115746 2175 1.775 - - - - 0.911 - - - 0.864 family with sequence similarity 168, member B [Source:ZFIN;Acc:ZDB-GENE-060929-180]
30. mdh1a mdh1a 11035 1.774 - - - - 0.784 - 0.990 - -
31. tmem35 ENSDARG00000052567 5685 1.773 - - - - - - - 0.860 0.913 transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
32. psmb3 ENSDARG00000013938 10744 1.77 - - - - - - 0.995 - 0.775 proteasome subunit beta 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2682]
33. pou3f2a ENSDARG00000070220 817 1.77 - - - - - - - 0.864 0.906 POU class 3 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-139]
34. kpnb1 ENSDARG00000104889 9282 1.767 - 0.932 - - - - - - 0.835 karyopherin (importin) beta 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2579]
35. rhoac ENSDARG00000116058 9256 1.767 - 0.826 - - - 0.941 - - - ras homolog gene family, member Ac [Source:ZFIN;Acc:ZDB-GENE-040426-2665]
36. tia1 ENSDARG00000052536, ENSDARG00000114478 4392 1.765 - - - - - - - 0.858 0.907 TIA1 cytotoxic granule-associated RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-1506]
37. fez1 ENSDARG00000023174 701 1.762 - - - - - - - 0.900 0.862 fasciculation and elongation protein zeta 1 (zygin I) [Source:ZFIN;Acc:ZDB-GENE-040426-2723]
38. PLCXD1_4 PLCXD1_4 3673 1.761 - - - - - 0.771 0.990 - -
39. mcts1 ENSDARG00000025972 4662 1.76 - 0.885 - - 0.875 - - - - malignant T cell amplified sequence 1 [Source:ZFIN;Acc:ZDB-GENE-040426-957]
40. s100v2 ENSDARG00000070702 8645 1.759 - - - - - 0.767 0.992 - - S100 calcium binding protein V2 [Source:ZFIN;Acc:ZDB-GENE-030131-8909]
41. zbtb18 ENSDARG00000028228 3653 1.758 - - - - - - - 0.827 0.931 zinc finger and BTB domain containing 18 [Source:ZFIN;Acc:ZDB-GENE-050419-73]
42. ewsr1a ENSDARG00000020258, ENSDARG00000113252 11221 1.756 - - - - - 0.829 - - 0.927 EWS RNA-binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2317]
43. abi1a ENSDARG00000010155 5631 1.749 - 0.873 - - 0.876 - - - - abl-interactor 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1701]
44. dlb ENSDARG00000004232 5120 1.742 - - - - - 0.844 - - 0.898 deltaB [Source:ZFIN;Acc:ZDB-GENE-980526-114]
45. naa15a ENSDARG00000003213 5889 1.742 - 0.868 - - 0.874 - - - - N(alpha)-acetyltransferase 15, NatA auxiliary subunit a [Source:ZFIN;Acc:ZDB-GENE-030131-2392]
46. patl1 ENSDARG00000017423 2744 1.741 - 0.848 - 0.893 - - - - - protein associated with topoisomerase II homolog 1 (yeast) [Source:ZFIN;Acc:ZDB-GENE-070209-83]
47. htatip htatip 1553 1.739 - - - - 0.889 - - - 0.850
48. peli1b ENSDARG00000044083, ENSDARG00000112797 3801 1.737 - 0.837 - - - - - - 0.900 pellino E3 ubiquitin protein ligase 1b [Source:ZFIN;Acc:ZDB-GENE-061027-372]
49. lrp5 ENSDARG00000006921 3522 1.731 - 0.838 - 0.893 - - - - - low density lipoprotein receptor-related protein 5 [Source:ZFIN;Acc:ZDB-GENE-050518-2]
50. arhgap1 ENSDARG00000024324 6904 1.731 - - - 0.892 - - - - 0.839 Rho GTPase activating protein 1 [Source:ZFIN;Acc:ZDB-GENE-050417-305]
51. ilf2 ENSDARG00000014591 14543 1.722 - - - - - - - 0.826 0.896 interleukin enhancer binding factor 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2345]
52. clvs2 ENSDARG00000053122 1390 1.722 - - - - - - - 0.875 0.847 clavesin 2 [Source:ZFIN;Acc:ZDB-GENE-041014-313]
53. tox ENSDARG00000032317 9126 1.721 - - - - - - - 0.772 0.949 thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]
54. dla ENSDARG00000010791 9281 1.719 - - - - - 0.831 - - 0.888 deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
55. cntnap2b ENSDARG00000074558, ENSDARG00000109616, ENSDARG00000116850 559 1.716 - - - - - - - 0.891 0.825 contactin associated protein like 2b [Source:NCBI gene;Acc:563345]
56. srsf3a ENSDARG00000025397, ENSDARG00000100815 11622 1.713 - 0.922 - - - - - 0.791 - serine/arginine-rich splicing factor 3a [Source:ZFIN;Acc:ZDB-GENE-030616-631]
57. neurod4 ENSDARG00000003469, ENSDARG00000117149 1732 1.711 - - - - - 0.822 - - 0.889 neuronal differentiation 4 [Source:ZFIN;Acc:ZDB-GENE-030730-1]
58. C2H1orf123 C2H1orf123 2344 1.711 - 0.836 - - 0.875 - - - -
59. mllt11 ENSDARG00000071026 2518 1.711 - - - - - - - 0.863 0.848 MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
60. CR936437.1 CR936437.1 6465 1.708 - - - - - - - 0.837 0.871
61. C24H17orf96 C24H17orf96 1538 1.707 - - - - 0.885 - - - 0.822
62. otx2 766 1.705 - - - - - - - 0.840 0.865 orthodenticle homeobox 2, transcript variant X2
63. snrpd3l ENSDARG00000076283 7655 1.702 - - - - 0.803 - - - 0.899 small nuclear ribonucleoprotein D3 polypeptide, like [Source:ZFIN;Acc:ZDB-GENE-030131-5219]
64. cdk2ap2 ENSDARG00000103145 8024 1.702 - - - - 0.862 - - - 0.840 cyclin-dependent kinase 2 associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040718-35]
65. si:dkeyp-113d7.4 si:dkeyp-113d7.4 33767 1.702 - 0.838 - - - - 0.864 - -
66. si:dkeyp-44a8.2 ENSDARG00000092493 8308 1.701 - - - 0.892 - - - - 0.809 si:dkeyp-44a8.2 [Source:ZFIN;Acc:ZDB-GENE-070705-542]
67. kif22 ENSDARG00000102624 3694 1.7 - - - - 0.862 - - - 0.838 kinesin family member 22 [Source:ZFIN;Acc:ZDB-GENE-080204-34]
68. znf292a ENSDARG00000016763 2253 1.7 - 0.847 - - - - - - 0.853 zinc finger protein 292a [Source:ZFIN;Acc:ZDB-GENE-071004-18]
69. HNRNPAB HNRNPAB 22267 1.699 - - - - - 0.811 - - 0.888
70. rbpjb ENSDARG00000052091 3122 1.698 - - - 0.895 - - - - 0.803 recombination signal binding protein for immunoglobulin kappa J region b [Source:ZFIN;Acc:ZDB-GENE-070319-1]
71. tars ENSDARG00000013250, ENSDARG00000110996, ENSDARG00000113759 4599 1.695 - 0.909 - - - 0.786 - - - threonyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-041010-218]
72. cdc42bpb ENSDARG00000019383 5976 1.692 - 0.859 - - 0.833 - - - - CDC42 binding protein kinase beta (DMPK-like) [Source:ZFIN;Acc:ZDB-GENE-030131-3647]
73. ldb1a ENSDARG00000010137 3035 1.691 - - - - - - - 0.815 0.876 LIM domain binding 1a [Source:ZFIN;Acc:ZDB-GENE-990415-138]
74. rrm1 ENSDARG00000014017 7296 1.688 - - 0.876 - - - - - 0.812 ribonucleotide reductase M1 polypeptide [Source:ZFIN;Acc:ZDB-GENE-990415-247]
75. gatad1 ENSDARG00000027612 1824 1.686 - - - 0.892 - - - - 0.794 GATA zinc finger domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050629-1]
76. nuf2 ENSDARG00000034624 2252 1.685 - - - - 0.882 0.803 - - - NUF2, NDC80 kinetochore complex component, homolog [Source:ZFIN;Acc:ZDB-GENE-040426-1121]
77. tpd52l2a ENSDARG00000027154 4359 1.681 - 0.881 - - - 0.800 - - - tumor protein D52-like 2a [Source:ZFIN;Acc:ZDB-GENE-030131-7047]
78. her4.3 ENSDARG00000070770 613 1.68 - - - - - - - 0.859 0.821 hairy-related 4, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-081030-7]
79. znf346 ENSDARG00000060695 3942 1.679 - 0.912 - - - - - - 0.767 zinc finger protein 346 [Source:ZFIN;Acc:ZDB-GENE-070209-152]
80. mxd3 ENSDARG00000098350 3040 1.678 - 0.857 - - - - - - 0.821 MAX dimerization protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1588]
81. lsm7 ENSDARG00000058328 7191 1.677 - 0.880 - - - - - - 0.797 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:ZFIN;Acc:ZDB-GENE-030131-8284]
82. lima1 lima1 4760 1.673 - - - - 0.876 0.797 - - -
83. hnrnpub ENSDARG00000004735 16496 1.673 - - - - - - - 0.729 0.944 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
84. psmb6 ENSDARG00000002240 8015 1.672 - - - - 0.875 - - - 0.797 proteasome subunit beta 6 [Source:ZFIN;Acc:ZDB-GENE-990415-216]
85. ube2g1a ENSDARG00000015292, ENSDARG00000112281 3207 1.672 - - - - 0.869 - - - 0.803 ubiquitin-conjugating enzyme E2G 1a (UBC7 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-6065]
86. nrarpa ENSDARG00000091419, ENSDARG00000111485 7867 1.671 - 0.899 - - - - - - 0.772 NOTCH regulated ankyrin repeat protein a [Source:ZFIN;Acc:ZDB-GENE-030515-6]
87. zgc:109889 ENSDARG00000069600, ENSDARG00000113538 554 1.67 - - - - - - - 0.867 0.803 zgc:109889 [Source:ZFIN;Acc:ZDB-GENE-050522-547]
88. nxf1 ENSDARG00000055076 3251 1.67 - - - - 0.890 - - - 0.780 nuclear RNA export factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2585]
89. IWS1 2428 1.669 - 0.895 - - - - - - 0.774 IWS1, SUPT6H interacting protein, transcript variant X2
90. sfpq ENSDARG00000011564, ENSDARG00000115611 15626 1.668 - - - - - - - 0.735 0.933 splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
91. fzd1 ENSDARG00000106062 1581 1.667 - 0.821 - - - - - - 0.846 frizzled class receptor 1 [Source:ZFIN;Acc:ZDB-GENE-990415-219]
92. zgc:110425 ENSDARG00000058479 5216 1.664 - 0.924 - - - - - - 0.740 zgc:110425 [Source:ZFIN;Acc:ZDB-GENE-050522-103]
93. ARHGAP35 2409 1.662 - 0.858 - - - 0.804 - - - Rho GTPase activating protein 35b, transcript variant X2
94. dr1 ENSDARG00000105098, ENSDARG00000113528 5263 1.661 - - - - 0.825 - - - 0.836 down-regulator of transcription 1 [Source:ZFIN;Acc:ZDB-GENE-061013-797]
95. st18 663 1.66 - - - - - - - 0.854 0.806 suppression of tumorigenicity 18, zinc finger
96. ncoa5 ENSDARG00000016345 5765 1.66 - 0.874 - - - - - - 0.786 nuclear receptor coactivator 5 [Source:ZFIN;Acc:ZDB-GENE-040912-155]
97. hnrnpm ENSDARG00000061735 19428 1.66 - - - - - - - 0.821 0.839 heterogeneous nuclear ribonucleoprotein M [Source:ZFIN;Acc:ZDB-GENE-030131-6898]
98. si:ch211-202e12.3 401 1.66 - - - - - - - 0.830 0.830 si:ch211-202e12.3, transcript variant X6
99. irx1a ENSDARG00000101831 644 1.659 - - - - - - - 0.803 0.856 iroquois homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-040707-1]
100. chst11 ENSDARG00000034375 2701 1.658 - 0.849 - - - 0.809 - - - carbohydrate (chondroitin 4) sulfotransferase 11 [Source:ZFIN;Acc:ZDB-GENE-040315-1]

There are 1608 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA