Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for hmga1a

Gene Name Gene ID Reads Annotation
hmga1a ENSDARG00000028335 254077 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]










Genes with expression patterns similar to hmga1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. hmga1a ENSDARG00000028335 254077 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
2. ran ENSDARG00000057026 54670 3.158 - - - 0.727 - 0.843 0.852 0.736 - RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
3. marcksl1b ENSDARG00000035715 37390 2.952 0.758 - - 0.725 0.740 - - 0.729 - MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
4. hdac1 ENSDARG00000015427 19804 2.456 0.753 - - - - - 0.842 0.861 - histone deacetylase 1 [Source:ZFIN;Acc:ZDB-GENE-020419-32]
5. calm2a ENSDARG00000031427, ENSDARG00000111871 43643 2.314 0.755 - - - - - 0.849 0.710 - calmodulin 2a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030804-3]
6. hnrnpa0a ENSDARG00000089302 45675 2.298 0.732 0.808 - - - - - 0.758 - heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
7. ptmab ENSDARG00000101766 182812 2.295 0.718 - - 0.781 - - - 0.796 - prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
8. tubb5 ENSDARG00000037997 18691 2.28 0.837 - - 0.718 0.725 - - - - tubulin, beta 5 [Source:ZFIN;Acc:ZDB-GENE-031110-4]
9. sfpq ENSDARG00000011564, ENSDARG00000115611 15626 2.235 - - - 0.700 0.703 0.832 - - - splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
10. seta ENSDARG00000031495 39977 2.196 0.771 - - - 0.704 - - 0.721 - SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
11. sox3 ENSDARG00000053569 12016 1.663 0.842 - - - - - - 0.821 - SRY (sex determining region Y)-box 3 [Source:ZFIN;Acc:ZDB-GENE-980526-333]
12. ddx5 ENSDARG00000038068 35302 1.641 - - - 0.770 - - - 0.871 - DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
13. AL954137.2 ENSDARG00000114408 104506 1.638 - - - - 0.721 - - 0.917 -
14. dla ENSDARG00000010791 9281 1.626 0.825 - - - - - - 0.801 - deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
15. inab ENSDARG00000053248 3239 1.621 0.792 - - - - - 0.829 - - internexin neuronal intermediate filament protein, alpha b [Source:ZFIN;Acc:ZDB-GENE-990415-83]
16. pcna ENSDARG00000054155 89521 1.606 - - 0.808 0.798 - - - - - proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
17. cirbp cirbp 88363 1.606 - - - - 0.721 - - 0.885 -
18. rrm1 ENSDARG00000014017 7296 1.605 0.823 - - 0.782 - - - - - ribonucleotide reductase M1 polypeptide [Source:ZFIN;Acc:ZDB-GENE-990415-247]
19. zgc:112425 zgc:112425 293873 1.604 0.860 - - - - - 0.744 - -
20. srsf2a ENSDARG00000057484 25721 1.602 - - - 0.762 - 0.840 - - - serine/arginine-rich splicing factor 2a [Source:ZFIN;Acc:ZDB-GENE-040426-2706]
21. meis1 meis1 6937 1.601 0.824 - - - - 0.777 - - -
22. stmn1a ENSDARG00000004169 21169 1.599 0.820 - - - - 0.779 - - - stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
23. sox2 ENSDARG00000070913 2763 1.59 0.823 - - 0.767 - - - - - SRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
24. hnrnpab hnrnpab 72354 1.574 - - - - 0.757 - - 0.817 -
25. TUBA1A ENSDARG00000001889 25294 1.572 - - - 0.716 - - - 0.856 - tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
26. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 1.569 0.841 - - 0.728 - - - - - cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
27. stmn1b ENSDARG00000033655 9491 1.568 0.823 - - - - - - 0.745 - stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
28. basp1 ENSDARG00000053358, ENSDARG00000110677 2590 1.565 0.799 - 0.766 - - - - - - brain abundant, membrane attached signal protein 1 [Source:ZFIN;Acc:ZDB-GENE-070424-158]
29. notch3 ENSDARG00000052139 15033 1.565 - - 0.813 0.752 - - - - - notch 3 [Source:ZFIN;Acc:ZDB-GENE-000329-5]
30. top1l ENSDARG00000070545 40529 1.565 - - 0.824 0.741 - - - - - DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
31. hmgb2b ENSDARG00000053990 11519 1.564 0.791 - - - - - - 0.773 - high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]
32. khsrp ENSDARG00000026489 15738 1.561 0.799 - - - - - - 0.762 - KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
33. scel ENSDARG00000034677, ENSDARG00000110476, ENSDARG00000111222, ENSDARG00000116782 3270 1.561 - - - - - 0.736 0.825 - - sciellin [Source:ZFIN;Acc:ZDB-GENE-030616-15]
34. her2 ENSDARG00000038205 3219 1.554 0.842 - - 0.712 - - - - - hairy-related 2 [Source:ZFIN;Acc:ZDB-GENE-980526-274]
35. khdrbs1a ENSDARG00000052856 53666 1.553 0.768 - 0.785 - - - - - - KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
36. nova2 ENSDARG00000017673 7685 1.552 0.815 - - 0.737 - - - - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
37. tmem35 ENSDARG00000052567 5685 1.546 0.819 - - 0.727 - - - - - transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
38. srgap2a srgap2a 7197 1.539 - - 0.821 - - 0.718 - - -
39. lfng ENSDARG00000037879 11783 1.533 0.812 - - 0.721 - - - - - LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:ZFIN;Acc:ZDB-GENE-980605-16]
40. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 1.531 0.804 - - - - - - 0.727 - methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
41. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 1.521 0.766 - - 0.755 - - - - - leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
42. zgc:92107 ENSDARG00000044874, ENSDARG00000115497 5938 1.521 0.739 - - - - 0.782 - - - zgc:92107 [Source:ZFIN;Acc:ZDB-GENE-041114-4]
43. tuba8l ENSDARG00000042708 48551 1.515 - - - 0.701 0.814 - - - - tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
44. hnrnpub ENSDARG00000004735 16496 1.512 0.786 - - 0.726 - - - - - heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
45. stmn2b ENSDARG00000070537 1586 1.501 0.786 - - - - - - 0.715 - stathmin 2b [Source:ZFIN;Acc:ZDB-GENE-050522-207]
46. fam60al 2846 1.485 0.736 - - 0.749 - - - - - family with sequence similarity 60, member A, like
47. fabp7a ENSDARG00000007697 5211 1.483 - - - 0.749 - - - 0.734 - fatty acid binding protein 7, brain, a [Source:ZFIN;Acc:ZDB-GENE-000627-1]
48. kdm1a ENSDARG00000060679 6152 1.482 0.729 - - - - 0.753 - - - lysine (K)-specific demethylase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7828]
49. CR936437.1 CR936437.1 6465 1.475 0.731 - - - - - - 0.744 -
50. dbn1 ENSDARG00000069113 4527 1.474 0.710 0.764 - - - - - - - drebrin 1 [Source:ZFIN;Acc:ZDB-GENE-091204-284]
51. hmgb1b ENSDARG00000030479 10398 1.461 0.739 - - - - - - 0.722 - high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]
52. MKI67 ENSDARG00000091150 11038 1.455 0.734 - - 0.721 - - - - - marker of proliferation Ki-67 [Source:ZFIN;Acc:ZDB-GENE-030131-9771]
53. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 8110 1.45 0.706 - - 0.744 - - - - - ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
54. carm1 ENSDARG00000018698 5599 1.448 - - - 0.705 - - - 0.743 - coactivator-associated arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040724-77]
55. nono ENSDARG00000020482, ENSDARG00000115783 12482 1.447 0.706 - - - 0.741 - - - - non-POU domain containing, octamer-binding [Source:ZFIN;Acc:ZDB-GENE-030131-713]
56. ppm1g ENSDARG00000075559 6516 1.431 0.700 - - 0.731 - - - - - protein phosphatase, Mg2+/Mn2+ dependent, 1G [Source:ZFIN;Acc:ZDB-GENE-030425-4]
57. srsf4 ENSDARG00000105293 9657 1.43 0.729 - - 0.701 - - - - - serine/arginine-rich splicing factor 4 [Source:ZFIN;Acc:ZDB-GENE-030131-591]
58. id1 ENSDARG00000040764 112601 1.423 - - - - 0.701 - - - 0.722 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
59. tmpob ENSDARG00000022978 8121 1.422 0.714 - - 0.708 - - - - - thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
60. nrarpb ENSDARG00000018958 6225 1.421 0.708 - - 0.713 - - - - - NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
61. C8H1orf106 C8H1orf106 2690 0.878 0.878 - - - - - - - -
62. ppiaa ENSDARG00000009212 290634 0.872 - - - - - - - 0.872 - peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
63. celf4 ENSDARG00000070045 1537 0.872 0.872 - - - - - - - - CUGBP, Elav-like family member 4 [Source:ZFIN;Acc:ZDB-GENE-040718-300]
64. gnao1a ENSDARG00000016676 8184 0.865 0.865 - - - - - - - - guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O, a [Source:ZFIN;Acc:ZDB-GENE-040426-1757]
65. ELOVL4 ELOVL4 3026 0.86 0.860 - - - - - - - -
66. cux2a 493 0.857 0.857 - - - - - - - - cut-like homeobox 2a
67. vamp1 ENSDARG00000031283 3094 0.851 0.851 - - - - - - - - vesicle-associated membrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2725]
68. AGO1 ENSDARG00000092644 4521 0.85 0.850 - - - - - - - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
69. tuba1c ENSDARG00000055216 8384 0.849 0.849 - - - - - - - - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
70. stx1b ENSDARG00000000503 2724 0.848 0.848 - - - - - - - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
71. snap25b ENSDARG00000058117 469 0.848 0.848 - - - - - - - - synaptosomal-associated protein, 25b [Source:ZFIN;Acc:ZDB-GENE-980526-392]
72. GLRA3 ENSDARG00000011066 242 0.847 0.847 - - - - - - - - glycine receptor, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-020402-1]
73. vamp2 ENSDARG00000056877 2158 0.845 0.845 - - - - - - - - vesicle-associated membrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8225]
74. epha4b ENSDARG00000011600 3110 0.843 0.843 - - - - - - - - eph receptor A4b [Source:ZFIN;Acc:ZDB-GENE-030826-6]
75. sypa ENSDARG00000042974, ENSDARG00000110528 3217 0.841 0.841 - - - - - - - - synaptophysin a [Source:ZFIN;Acc:ZDB-GENE-031104-2]
76. plp1a ENSDARG00000103732 3544 0.839 0.839 - - - - - - - - proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
77. UBE2QL1 ENSDARG00000079276 3474 0.838 0.838 - - - - - - - - ubiquitin-conjugating enzyme E2Q family-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8137]
78. scrt2 ENSDARG00000056175 4331 0.838 0.838 - - - - - - - - scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
79. clvs2 ENSDARG00000053122 1390 0.837 0.837 - - - - - - - - clavesin 2 [Source:ZFIN;Acc:ZDB-GENE-041014-313]
80. greb1l ENSDARG00000039196 2085 0.837 0.837 - - - - - - - - GREB1 like retinoic acid receptor coactivator [Source:ZFIN;Acc:ZDB-GENE-030131-4022]
81. PRTG PRTG 4714 0.836 0.836 - - - - - - - -
82. gng3 ENSDARG00000009553 2530 0.835 0.835 - - - - - - - - guanine nucleotide binding protein (G protein), gamma 3 [Source:ZFIN;Acc:ZDB-GENE-010705-1]
83. syt2a ENSDARG00000025206 681 0.834 0.834 - - - - - - - - synaptotagmin IIa [Source:ZFIN;Acc:ZDB-GENE-060503-315]
84. psmb6 ENSDARG00000002240 8015 0.834 - - - - - - 0.834 - - proteasome subunit beta 6 [Source:ZFIN;Acc:ZDB-GENE-990415-216]
85. TUBB8P7_1 TUBB8P7_1 2722 0.833 0.833 - - - - - - - -
86. oaz1b ENSDARG00000104782 37623 0.832 - - - - - 0.832 - - - ornithine decarboxylase antizyme 1b [Source:ZFIN;Acc:ZDB-GENE-020731-5]
87. zeb2a ENSDARG00000062338, ENSDARG00000111349, ENSDARG00000115964 6087 0.832 0.832 - - - - - - - - zinc finger E-box binding homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-070912-553]
88. pcdh1gc5 ENSDARG00000104826 10052 0.832 0.832 - - - - - - - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
89. ppp3ca ENSDARG00000004988 615 0.831 0.831 - - - - - - - - protein phosphatase 3, catalytic subunit, alpha isozyme [Source:ZFIN;Acc:ZDB-GENE-091113-24]
90. slc8a2b ENSDARG00000100592 598 0.831 0.831 - - - - - - - - solute carrier family 8 (sodium/calcium exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-050419-209]
91. HNRNPAB HNRNPAB 22267 0.831 - - - - - - - 0.831 -
92. map2k6 ENSDARG00000099184 8741 0.831 - - - - - - 0.831 - - mitogen-activated protein kinase kinase 6 [Source:ZFIN;Acc:ZDB-GENE-010202-3]
93. ptprnb ENSDARG00000077047 2743 0.831 0.831 - - - - - - - - protein tyrosine phosphatase, receptor type, Nb [Source:ZFIN;Acc:ZDB-GENE-100505-1]
94. amph ENSDARG00000007663 599 0.83 0.830 - - - - - - - - amphiphysin [Source:ZFIN;Acc:ZDB-GENE-040426-1711]
95. nop56 ENSDARG00000012820 15231 0.83 - - - - - - 0.830 - - NOP56 ribonucleoprotein homolog [Source:ZFIN;Acc:ZDB-GENE-040109-1]
96. LGALS3 LGALS3 8665 0.829 - - - - - - 0.829 - -
97. sv2bb ENSDARG00000060711 196 0.829 0.829 - - - - - - - - synaptic vesicle glycoprotein 2Bb [Source:ZFIN;Acc:ZDB-GENE-030131-2789]
98. ndufs2 ENSDARG00000007526 6516 0.829 - - - - - - 0.829 - - NADH:ubiquinone oxidoreductase core subunit S2 [Source:ZFIN;Acc:ZDB-GENE-050522-273]
99. stmn4l ENSDARG00000043932 654 0.828 0.828 - - - - - - - - stathmin-like 4, like [Source:ZFIN;Acc:ZDB-GENE-040718-301]
100. puf60b ENSDARG00000001241 13827 0.827 - - - - - - 0.827 - - poly-U binding splicing factor b [Source:ZFIN;Acc:ZDB-GENE-040625-116]

There are 613 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA