Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for hmbox1a

Gene Name Gene ID Reads Annotation
hmbox1a ENSDARG00000027082 2569 homeobox containing 1a [Source:ZFIN;Acc:ZDB-GENE-050913-89]










Genes with expression patterns similar to hmbox1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. hmbox1a ENSDARG00000027082 2569 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 homeobox containing 1a [Source:ZFIN;Acc:ZDB-GENE-050913-89]
2. si:ch211-173p18.3 ENSDARG00000035821 1917 2.313 - 0.808 - - - - 0.799 - 0.706 si:ch211-173p18.3 [Source:ZFIN;Acc:ZDB-GENE-060503-672]
3. sh3bgrl3 ENSDARG00000098075 3071 1.789 - - 0.997 - - 0.792 - - - SH3 domain binding glutamate-rich protein like 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1059]
4. gnb4b ENSDARG00000115383 7457 1.772 0.782 - 0.990 - - - - - - guanine nucleotide binding protein (G protein), beta polypeptide 4b [Source:ZFIN;Acc:ZDB-GENE-041114-167]
5. pde12 ENSDARG00000030964 615 1.76 - - 0.997 - - 0.763 - - - phosphodiesterase 12 [Source:ZFIN;Acc:ZDB-GENE-060519-25]
6. C5H2orf68 C5H2orf68 849 1.757 - - 0.996 - - 0.761 - - -
7. aup1 ENSDARG00000092609 2431 1.741 0.745 - 0.996 - - - - - - ancient ubiquitous protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3375]
8. DACT3_1 DACT3_1 1235 1.739 - - 0.996 - - - - - 0.743
9. si:ch211-216l23.2 ENSDARG00000069122, ENSDARG00000115838 1365 1.73 - - 0.997 - - 0.733 - - - si:ch211-216l23.2 [Source:ZFIN;Acc:ZDB-GENE-030131-3806]
10. brd8 ENSDARG00000025071 2605 1.729 - - 0.996 - - - 0.733 - - bromodomain containing 8 [Source:ZFIN;Acc:ZDB-GENE-030722-10]
11. zdhhc6 ENSDARG00000075721 1494 1.722 - - 0.997 0.725 - - - - - zinc finger, DHHC-type containing 6 [Source:ZFIN;Acc:ZDB-GENE-030131-3189]
12. suz12a ENSDARG00000070256 2229 1.72 0.723 - 0.997 - - - - - - SUZ12, polycomb repressive complex 2 subunit a [Source:ZFIN;Acc:ZDB-GENE-040801-36]
13. dnaja3a ENSDARG00000058494, ENSDARG00000111151 2497 1.719 0.724 - 0.995 - - - - - - DnaJ (Hsp40) homolog, subfamily A, member 3A [Source:ZFIN;Acc:ZDB-GENE-030131-7837]
14. abca3b ENSDARG00000100524 2416 1.712 - 0.716 0.996 - - - - - - ATP-binding cassette, sub-family A (ABC1), member 3b [Source:ZFIN;Acc:ZDB-GENE-050517-2]
15. egr2a ENSDARG00000044098 1101 1.696 - - 0.996 0.700 - - - - - early growth response 2a [Source:ZFIN;Acc:ZDB-GENE-030723-6]
16. si:dkey-238c7.12 si:dkey-238c7.12 6600 1.693 - - 0.985 - - - - - 0.708
17. unc119b ENSDARG00000044362 1528 1.693 - - 0.956 0.737 - - - - - unc-119 homolog b (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-050201-2]
18. zgc:101846 15202 1.692 - - 0.979 - - - - - 0.713 zgc:101846
19. LDLRAD4 LDLRAD4 1237 1.638 - - - 0.864 - - - - 0.774
20. umps ENSDARG00000012215 4564 1.629 - 0.734 0.895 - - - - - - uridine monophosphate synthetase [Source:ZFIN;Acc:ZDB-GENE-040426-785]
21. metap1d ENSDARG00000019715, ENSDARG00000112086 236 1.607 - - - 0.832 - 0.775 - - - methionyl aminopeptidase type 1D (mitochondrial) [Source:ZFIN;Acc:ZDB-GENE-050522-71]
22. magi1b ENSDARG00000003169 2056 1.588 0.757 - - 0.831 - - - - - membrane associated guanylate kinase, WW and PDZ domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-030131-5110]
23. zgc:194398 ENSDARG00000078250 815 1.559 - 0.825 - - - 0.734 - - - zgc:194398 [Source:ZFIN;Acc:ZDB-GENE-081022-111]
24. bnip4 ENSDARG00000022832, ENSDARG00000117207 3100 1.552 - 0.795 - - - - 0.757 - - BCL2 interacting protein 4 [Source:ZFIN;Acc:ZDB-GENE-051113-212]
25. syncripl ENSDARG00000026723 3889 1.552 0.773 - - - - 0.779 - - - synaptotagmin binding, cytoplasmic RNA interacting protein, like [Source:ZFIN;Acc:ZDB-GENE-030131-3104]
26. kansl1a ENSDARG00000090895 2593 1.542 - - - 0.709 - 0.833 - - - KAT8 regulatory NSL complex subunit 1a [Source:ZFIN;Acc:ZDB-GENE-121219-5]
27. rps6ka3a ENSDARG00000035556, ENSDARG00000116641 3608 1.538 - 0.776 - - - - 0.762 - - ribosomal protein S6 kinase a, polypeptide 3a [Source:ZFIN;Acc:ZDB-GENE-030219-119]
28. Sep-06 Sep-06 5465 1.528 0.791 - - - - - - - 0.737
29. mob2a ENSDARG00000023214, ENSDARG00000111189 1740 1.523 - - - - - 0.789 0.734 - - MOB kinase activator 2a [Source:ZFIN;Acc:ZDB-GENE-040718-56]
30. CCDC137 ENSDARG00000104024, ENSDARG00000110733 1855 1.522 0.778 - - - - 0.744 - - - coiled-coil domain containing 137 [Source:ZFIN;Acc:ZDB-GENE-060929-1206]
31. plxna3 ENSDARG00000007172 1412 1.511 - 0.809 - - - - - - 0.702 plexin A3 [Source:ZFIN;Acc:ZDB-GENE-070613-1]
32. srrm2 ENSDARG00000037965 1967 1.51 - - - 0.708 - 0.802 - - - serine/arginine repetitive matrix 2 [Source:ZFIN;Acc:ZDB-GENE-050522-399]
33. marcksa ENSDARG00000004049 2518 1.501 - - - 0.772 - - - - 0.729 myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
34. RBM6 ENSDARG00000077060 3521 1.5 0.723 0.777 - - - - - - - RNA binding motif protein 6 [Source:ZFIN;Acc:ZDB-GENE-050309-79]
35. commd2 ENSDARG00000003373 540 1.494 0.721 - - - - 0.773 - - - COMM domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040718-118]
36. trim8b ENSDARG00000060729, ENSDARG00000115043 1528 1.494 - 0.732 - - - - 0.762 - - tripartite motif containing 8b [Source:ZFIN;Acc:ZDB-GENE-030131-4325]
37. mxi1 ENSDARG00000040884, ENSDARG00000111950 3239 1.493 - 0.779 - - - - - - 0.714 max interactor 1, dimerization protein [Source:ZFIN;Acc:ZDB-GENE-990415-151]
38. atp6v0cb ENSDARG00000036577 3472 1.479 - 0.756 - - - - - - 0.723 ATPase H+ transporting V0 subunit cb [Source:ZFIN;Acc:ZDB-GENE-030131-4127]
39. NAALAD2 ENSDARG00000021383 704 1.477 0.736 - - - - - 0.741 - - N-acetylated alpha-linked acidic dipeptidase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1025]
40. rhoaa ENSDARG00000026845 6900 1.475 - - - - - 0.736 - - 0.739 ras homolog gene family, member Aa [Source:ZFIN;Acc:ZDB-GENE-040426-2150]
41. fip1l1b ENSDARG00000070431 1677 1.473 - 0.755 - - - 0.718 - - - FIP1 like 1b (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-041010-138]
42. TRAK2 ENSDARG00000102471 2258 1.47 0.757 - - - - - 0.713 - - trafficking protein, kinesin binding 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7496]
43. bzw1b ENSDARG00000099148 2972 1.465 0.724 0.741 - - - - - - - basic leucine zipper and W2 domains 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2881]
44. rtf1 ENSDARG00000008947 6596 1.464 - - - - - 0.751 - - 0.713 RTF1 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-030131-6778]
45. tmed1b ENSDARG00000017255 2238 1.46 - - - - - 0.755 - - 0.705 transmembrane p24 trafficking protein 1b [Source:ZFIN;Acc:ZDB-GENE-070112-1112]
46. PSMG4 1007 1.459 - - - 0.724 - 0.735 - - - proteasome (prosome, macropain) assembly chaperone 4
47. RSF1_2 RSF1_2 1343 1.457 - - - - - 0.706 - - 0.751
48. sod1 ENSDARG00000043848 1514 1.451 - 0.704 - - - 0.747 - - - superoxide dismutase 1, soluble [Source:ZFIN;Acc:ZDB-GENE-990415-258]
49. ldb1a ENSDARG00000010137 3035 1.449 - - - 0.716 - 0.733 - - - LIM domain binding 1a [Source:ZFIN;Acc:ZDB-GENE-990415-138]
50. kdm6bb ENSDARG00000056929 4807 1.448 - - - - - 0.702 - - 0.746 lysine (K)-specific demethylase 6B, b [Source:ZFIN;Acc:ZDB-GENE-040724-166]
51. peli1b ENSDARG00000044083, ENSDARG00000112797 3801 1.445 - - - 0.722 - - - - 0.723 pellino E3 ubiquitin protein ligase 1b [Source:ZFIN;Acc:ZDB-GENE-061027-372]
52. tbca ENSDARG00000016754 6427 1.445 0.704 - - - - - 0.741 - - tubulin cofactor a [Source:ZFIN;Acc:ZDB-GENE-040426-962]
53. prmt5 ENSDARG00000079605, ENSDARG00000116785 4676 1.444 0.732 - - - - 0.712 - - - protein arginine methyltransferase 5 [Source:ZFIN;Acc:ZDB-GENE-030616-585]
54. MUM1L1 MUM1L1 968 1.44 - 0.725 - - - 0.715 - - -
55. CREM CREM 1333 1.437 - 0.720 - 0.717 - - - - -
56. LONRF2 LONRF2 721 1.436 0.719 - - - - 0.717 - - -
57. TTYH3 TTYH3 1841 1.435 - 0.713 - 0.722 - - - - -
58. usp49 ENSDARG00000000229 706 1.431 0.724 - - 0.707 - - - - - ubiquitin specific peptidase 49 [Source:ZFIN;Acc:ZDB-GENE-050208-484]
59. pnisr ENSDARG00000069855, ENSDARG00000116449 3465 1.423 - 0.717 - - - - - - 0.706 PNN-interacting serine/arginine-rich protein [Source:ZFIN;Acc:ZDB-GENE-030131-362]
60. ANXA1 ANXA1 1103 1.419 - - - - - 0.708 0.711 - -
61. si:ch211-10d23.5 ENSDARG00000095510 2632 0.998 - - 0.998 - - - - - - si:ch211-10d23.5 [Source:ZFIN;Acc:ZDB-GENE-090313-10]
62. CABZ01034082.1 ENSDARG00000099583 2237 0.997 - - 0.997 - - - - - -
63. pgam5 ENSDARG00000035608 4044 0.997 - - 0.997 - - - - - - PGAM family member 5, serine/threonine protein phosphatase, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-030131-683]
64. hyi ENSDARG00000030166 1199 0.997 - - 0.997 - - - - - - hydroxypyruvate isomerase [Source:ZFIN;Acc:ZDB-GENE-040426-1273]
65. si:ch211-266d19.4 ENSDARG00000012642 1251 0.997 - - 0.997 - - - - - - si:ch211-266d19.4 [Source:ZFIN;Acc:ZDB-GENE-091204-74]
66. matr3l1.1_1 ENSDARG00000000394, ENSDARG00000001162 1860 0.997 - - 0.997 - - - - - - matrin 3-like 1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-40]
67. fam118b ENSDARG00000078983 1822 0.997 - - 0.997 - - - - - - family with sequence similarity 118, member B [Source:ZFIN;Acc:ZDB-GENE-060810-6]
68. lmx1bb ENSDARG00000068365 627 0.997 - - 0.997 - - - - - - LIM homeobox transcription factor 1, beta b [Source:ZFIN;Acc:ZDB-GENE-050114-2]
69. eif3k ENSDARG00000068289 1102 0.997 - - 0.997 - - - - - - eukaryotic translation initiation factor 3, subunit K [Source:ZFIN;Acc:ZDB-GENE-050417-45]
70. rad54l ENSDARG00000018623 837 0.997 - - 0.997 - - - - - - RAD54 like [Source:ZFIN;Acc:ZDB-GENE-040426-968]
71. rnmt ENSDARG00000070553 1743 0.997 - - 0.997 - - - - - - RNA (guanine-7-) methyltransferase [Source:ZFIN;Acc:ZDB-GENE-041008-25]
72. poc5 ENSDARG00000059982 569 0.997 - - 0.997 - - - - - - POC5 centriolar protein homolog (Chlamydomonas) [Source:ZFIN;Acc:ZDB-GENE-060526-135]
73. PRIMPOL ENSDARG00000033273, ENSDARG00000111555 918 0.997 - - 0.997 - - - - - - primase and polymerase (DNA-directed) [Source:ZFIN;Acc:ZDB-GENE-051113-100]
74. zbtb33 ENSDARG00000071467, ENSDARG00000112085 1425 0.997 - - 0.997 - - - - - - zinc finger and BTB domain containing 33 [Source:ZFIN;Acc:ZDB-GENE-070412-3]
75. wnt7bb ENSDARG00000071107 1158 0.997 - - 0.997 - - - - - - wingless-type MMTV integration site family, member 7Bb [Source:ZFIN;Acc:ZDB-GENE-081006-1]
76. METTL18 ENSDARG00000074588 918 0.997 - - 0.997 - - - - - - methyltransferase like 18 [Source:HGNC Symbol;Acc:HGNC:28793]
77. FUZ ENSDARG00000079730 821 0.997 - - 0.997 - - - - - - fuzzy planar cell polarity protein [Source:ZFIN;Acc:ZDB-GENE-090609-2]
78. acss2 ENSDARG00000037781, ENSDARG00000112371 3100 0.997 - - 0.997 - - - - - - acyl-CoA synthetase short chain family member 2 [Source:ZFIN;Acc:ZDB-GENE-040718-388]
79. slc4a2b ENSDARG00000052330 1900 0.997 - - 0.997 - - - - - - solute carrier family 4 (anion exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-030429-14]
80. taok2b_1 ENSDARG00000100620 2082 0.997 - - 0.997 - - - - - - TAO kinase 2b [Source:ZFIN;Acc:ZDB-GENE-110603-3]
81. map3k3 ENSDARG00000060348 1482 0.997 - - 0.997 - - - - - - mitogen-activated protein kinase kinase kinase 3 [Source:ZFIN;Acc:ZDB-GENE-070910-1]
82. GSG2 GSG2 1162 0.997 - - 0.997 - - - - - -
83. arl15b ENSDARG00000057995, ENSDARG00000109775 1243 0.997 - - 0.997 - - - - - - ADP-ribosylation factor-like 15b [Source:ZFIN;Acc:ZDB-GENE-080813-2]
84. tbccd1 ENSDARG00000056886, ENSDARG00000114427 1389 0.997 - - 0.997 - - - - - - TBCC domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041210-222]
85. ptbp2a ENSDARG00000101947 1921 0.997 - - 0.997 - - - - - - polypyrimidine tract binding protein 2a [Source:ZFIN;Acc:ZDB-GENE-050320-141]
86. plrg1 ENSDARG00000037283, ENSDARG00000110921 1552 0.997 - - 0.997 - - - - - - pleiotropic regulator 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2787]
87. dnajc2 ENSDARG00000070477 902 0.997 - - 0.997 - - - - - - DnaJ (Hsp40) homolog, subfamily C, member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1912]
88. trps1 ENSDARG00000104082 918 0.997 - - 0.997 - - - - - - trichorhinophalangeal syndrome I [Source:ZFIN;Acc:ZDB-GENE-030131-8404]
89. AL772300.3 AL772300.3 1752 0.996 - - 0.996 - - - - - -
90. lipg ENSDARG00000031044 1516 0.996 - - 0.996 - - - - - - lipase, endothelial [Source:ZFIN;Acc:ZDB-GENE-040426-699]
91. dnmt1 ENSDARG00000030756 2741 0.996 - - 0.996 - - - - - - DNA (cytosine-5-)-methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-990714-15]
92. rab35 rab35 1287 0.996 - - 0.996 - - - - - -
93. PYURF ENSDARG00000045773 4576 0.996 - - 0.996 - - - - - - PIGY upstream reading frame [Source:HGNC Symbol;Acc:HGNC:44317]
94. slc39a10 ENSDARG00000005823 2634 0.996 - - 0.996 - - - - - - solute carrier family 39 (zinc transporter), member 10 [Source:ZFIN;Acc:ZDB-GENE-040426-1157]
95. cdk2 ENSDARG00000026577 2835 0.996 - - 0.996 - - - - - - cyclin-dependent kinase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2741]
96. ENSDARG00000087348 ENSDARG00000087348 2870 0.995 - - 0.995 - - - - - -
97. sypl2b ENSDARG00000000690 2006 0.995 - - 0.995 - - - - - - synaptophysin-like 2b [Source:ZFIN;Acc:ZDB-GENE-050417-309]
98. ddx3 ddx3 4076 0.995 - - 0.995 - - - - - -
99. pip5k2 pip5k2 5743 0.995 - - 0.995 - - - - - -
100. rad23b ENSDARG00000021550 2575 0.995 - - 0.995 - - - - - - RAD23 homolog B, nucleotide excision repair protein [Source:ZFIN;Acc:ZDB-GENE-040426-1487]

There are 1273 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA