Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for hirip3

Gene Name Gene ID Reads Annotation
hirip3 ENSDARG00000027749, ENSDARG00000115688 5875 HIRA interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-030131-5753]










Genes with expression patterns similar to hirip3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. hirip3 ENSDARG00000027749, ENSDARG00000115688 5875 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 HIRA interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-030131-5753]
2. apex1 ENSDARG00000045843 6345 3.244 - - 0.844 - 0.815 - 0.825 0.760 - APEX nuclease (multifunctional DNA repair enzyme) 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2761]
3. ylpm1 ENSDARG00000043680 7676 2.635 - - 0.791 - - - 0.883 - 0.961 YLP motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2196]
4. kif11 ENSDARG00000010948 4973 2.548 - - 0.726 0.994 0.828 - - - - kinesin family member 11 [Source:ZFIN;Acc:ZDB-GENE-020426-1]
5. notch1b ENSDARG00000052094 7874 2.536 - - 0.738 0.989 - - - 0.809 - notch 1b [Source:ZFIN;Acc:ZDB-GENE-990415-183]
6. nup50 ENSDARG00000017454 4425 2.482 - - - - - 0.737 - 0.767 0.978 nucleoporin 50 [Source:ZFIN;Acc:ZDB-GENE-030131-1689]
7. banf1 ENSDARG00000037009 16466 2.482 0.738 - - 0.977 - - - 0.767 - barrier to autointegration factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6657]
8. xrcc5_1 ENSDARG00000099298 1533 2.447 - 0.900 - - - - 0.710 0.837 - X-ray repair complementing defective repair in Chinese hamster cells 5 [Source:ZFIN;Acc:ZDB-GENE-041008-108]
9. senp3a ENSDARG00000095538, ENSDARG00000116812 2292 2.445 - - 0.725 0.988 - - 0.732 - - SUMO specific peptidase 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2303]
10. si:dkey-67c22.2 ENSDARG00000055389 6410 2.437 - - - - - 0.744 0.713 - 0.980 si:dkey-67c22.2 [Source:ZFIN;Acc:ZDB-GENE-030131-5845]
11. rbb4 rbb4 15541 2.432 - - 0.847 - - - 0.724 0.861 -
12. fen1 ENSDARG00000011404 3358 2.388 - 0.806 0.741 - - - 0.841 - - flap structure-specific endonuclease 1 [Source:ZFIN;Acc:ZDB-GENE-031112-11]
13. sox19a ENSDARG00000010770, ENSDARG00000110497 4683 2.379 - - 0.794 0.871 - - - 0.714 - SRY (sex determining region Y)-box 19a [Source:ZFIN;Acc:ZDB-GENE-980526-102]
14. stmn1a ENSDARG00000004169 21169 2.348 0.748 - - - 0.884 - 0.716 - - stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
15. CACFD1 ENSDARG00000090818 1298 2.331 - 0.768 - - - - 0.767 0.796 - calcium channel flower domain containing 1 [Source:HGNC Symbol;Acc:HGNC:1365]
16. nkain1 ENSDARG00000006859 1961 2.31 - - - - 0.847 - 0.737 0.726 - sodium/potassium transporting ATPase interacting 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1472]
17. rfc2 ENSDARG00000014274 1533 2.31 0.710 - 0.771 - - - - 0.829 - replication factor C (activator 1) 2 [Source:ZFIN;Acc:ZDB-GENE-050306-29]
18. pum1 ENSDARG00000099256 5017 2.307 - 0.814 - - - - 0.775 0.718 - pumilio RNA-binding family member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2074]
19. nup205 ENSDARG00000042530, ENSDARG00000114489 2255 2.293 - - 0.733 - - - 0.713 0.847 - nucleoporin 205 [Source:ZFIN;Acc:ZDB-GENE-040715-8]
20. u2af2b ENSDARG00000011740 6946 2.274 - - 0.802 - - 0.714 0.758 - - U2 small nuclear RNA auxiliary factor 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1881]
21. setb ENSDARG00000003920 21788 2.258 - - - - - 0.789 0.753 0.716 - SET nuclear proto-oncogene b [Source:ZFIN;Acc:ZDB-GENE-030131-433]
22. slbp ENSDARG00000100558 3405 2.256 0.717 - 0.793 - - - - 0.746 - stem-loop binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-9686]
23. caprin1a ENSDARG00000009346, ENSDARG00000112212 9675 2.234 0.754 - 0.720 - 0.760 - - - - cell cycle associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-226]
24. khdrbs1a ENSDARG00000052856 53666 2.231 0.746 - - - - - - 0.738 0.747 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
25. ezh2 ENSDARG00000010571 3273 2.221 - 0.781 0.724 - - - 0.716 - - enhancer of zeste 2 polycomb repressive complex 2 subunit [Source:ZFIN;Acc:ZDB-GENE-041111-259]
26. vezf1a ENSDARG00000008247 1449 2.153 - - 0.707 - - - 0.735 0.711 - vascular endothelial zinc finger 1a [Source:ZFIN;Acc:ZDB-GENE-040108-4]
27. magi1b ENSDARG00000003169 2056 2.147 - - 0.723 - - 0.718 0.706 - - membrane associated guanylate kinase, WW and PDZ domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-030131-5110]
28. nipblb ENSDARG00000061052 6109 1.97 - - - 0.989 - - - - 0.981 nipped-B homolog b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-6070]
29. tspan5a ENSDARG00000086033 1865 1.876 - 0.887 - 0.989 - - - - - tetraspanin 5a [Source:ZFIN;Acc:ZDB-GENE-041010-145]
30. meaf6 ENSDARG00000101216 6865 1.827 - - - - - - 0.848 - 0.979 MYST/Esa1-associated factor 6 [Source:ZFIN;Acc:ZDB-GENE-040808-12]
31. vat1 ENSDARG00000056481, ENSDARG00000111382 7389 1.807 - - - 0.995 - - 0.812 - - vesicle amine transport 1 [Source:ZFIN;Acc:ZDB-GENE-030616-178]
32. rbb4l ENSDARG00000015208 5542 1.806 - - 0.815 0.991 - - - - - retinoblastoma binding protein 4, like [Source:ZFIN;Acc:ZDB-GENE-030131-848]
33. cstf3 ENSDARG00000018904 6111 1.777 - - - - 0.961 0.816 - - - cleavage stimulation factor, 3' pre-RNA, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1997]
34. nop58 ENSDARG00000104353 8497 1.773 - - - 0.989 - - 0.784 - - NOP58 ribonucleoprotein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-2140]
35. NDNF ENSDARG00000062936 7287 1.764 - - - - - - 0.789 - 0.975 neuron-derived neurotrophic factor [Source:ZFIN;Acc:ZDB-GENE-030131-207]
36. selt2 12741 1.748 - - - 0.979 0.769 - - - - selenoprotein T, 2
37. yme1l1a ENSDARG00000075192 2634 1.746 - - - 0.988 - - 0.758 - - YME1-like 1a [Source:ZFIN;Acc:ZDB-GENE-091113-41]
38. lemd3 ENSDARG00000015824 2868 1.744 - - - - - 0.763 - - 0.981 LEM domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-030131-490]
39. ak2 ENSDARG00000005926 7598 1.742 - - - 0.991 - - - 0.751 - adenylate kinase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-512]
40. rps17 ENSDARG00000104011 27028 1.741 - - - - 0.779 - - - 0.962 ribosomal protein S17 [Source:ZFIN;Acc:ZDB-GENE-040426-1852]
41. kdm2aa ENSDARG00000059653 2389 1.741 - - - 0.988 - - 0.753 - - lysine (K)-specific demethylase 2Aa [Source:ZFIN;Acc:ZDB-GENE-061215-144]
42. kctd10 ENSDARG00000017115 1659 1.736 - - - 0.988 - - 0.748 - - potassium channel tetramerization domain containing 10 [Source:ZFIN;Acc:ZDB-GENE-040426-2843]
43. skib ENSDARG00000008034 6518 1.736 - - - 0.991 - - 0.745 - - v-ski avian sarcoma viral oncogene homolog b [Source:ZFIN;Acc:ZDB-GENE-990715-10]
44. atf7ip ENSDARG00000069619 5495 1.734 - - - - - - 0.860 0.874 - activating transcription factor 7 interacting protein [Source:ZFIN;Acc:ZDB-GENE-061103-178]
45. cx43.4 ENSDARG00000007099 16369 1.733 - - - 0.928 - - - 0.805 - connexin 43.4 [Source:ZFIN;Acc:ZDB-GENE-990415-38]
46. dctd ENSDARG00000036990 2168 1.726 - - - 0.991 - - 0.735 - - dCMP deaminase [Source:ZFIN;Acc:ZDB-GENE-050417-116]
47. ndrg3a ENSDARG00000013087 5581 1.723 - - - 0.982 - - 0.741 - - ndrg family member 3a [Source:ZFIN;Acc:ZDB-GENE-980526-124]
48. foxp4 ENSDARG00000076120 9458 1.72 - - 0.736 0.984 - - - - - forkhead box P4 [Source:ZFIN;Acc:ZDB-GENE-101207-1]
49. kctd6a ENSDARG00000043095 480 1.72 - 0.884 - - - - - 0.836 - potassium channel tetramerization domain containing 6a [Source:ZFIN;Acc:ZDB-GENE-050208-474]
50. lsm14ab ENSDARG00000100553 3837 1.72 - - - - - - 0.867 0.853 - LSM14A mRNA processing body assembly factor b [Source:ZFIN;Acc:ZDB-GENE-040426-2462]
51. atp6v1c1a ENSDARG00000023967 4611 1.717 - - - 0.991 - 0.726 - - - ATPase H+ transporting V1 subunit C1a [Source:ZFIN;Acc:ZDB-GENE-030616-612]
52. atg5 ENSDARG00000023396 1726 1.715 - 0.732 - - - - - - 0.983 ATG5 autophagy related 5 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040801-149]
53. adnp2b ENSDARG00000028431 4683 1.715 - - - - - - 0.718 - 0.997 ADNP homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5930]
54. sf3b5 ENSDARG00000016855 4015 1.712 - - - - - - 0.731 - 0.981 splicing factor 3b, subunit 5 [Source:ZFIN;Acc:ZDB-GENE-040718-181]
55. prmt1 ENSDARG00000010246 11311 1.707 - - 0.797 - - - - 0.910 - protein arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-693]
56. ctbp2 ctbp2 3255 1.705 - 0.917 - - - - 0.788 - -
57. zgc:55733 ENSDARG00000103845 1550 1.698 - - - - - - 0.835 0.863 - zgc:55733 [Source:ZFIN;Acc:ZDB-GENE-040426-791]
58. ahcy ENSDARG00000005191 50741 1.694 - - - 0.917 - - - - 0.777 adenosylhomocysteinase [Source:ZFIN;Acc:ZDB-GENE-031219-6]
59. sptbn2 ENSDARG00000053956 8452 1.694 - 0.711 - 0.983 - - - - - spectrin, beta, non-erythrocytic 2 [Source:ZFIN;Acc:ZDB-GENE-030131-787]
60. reep3l reep3l 608 1.692 - 0.852 - - 0.840 - - - -
61. sf3a1 ENSDARG00000041887 6702 1.692 - - - - 0.831 - - 0.861 - splicing factor 3a, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030616-156]
62. six3a ENSDARG00000058008, ENSDARG00000114971 586 1.692 - 0.869 - - - - - 0.823 - SIX homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-990415-127]
63. tgif1 ENSDARG00000059337 4020 1.691 - - - - 0.964 - 0.727 - - TGFB-induced factor homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-030131-475]
64. fam50a ENSDARG00000024895 3020 1.69 - - - - - - 0.707 - 0.983 family with sequence similarity 50, member A [Source:ZFIN;Acc:ZDB-GENE-050417-110]
65. shfm1 7620 1.687 - - - 0.986 - 0.701 - - - split hand/foot malformation (ectrodactyly) type 1
66. si:ch211-79l20.4 1305 1.684 - 0.837 - - 0.847 - - - - si:ch211-79l20.4, transcript variant X3
67. nol11 ENSDARG00000026767 2528 1.683 - - - - - - 0.809 0.874 - nucleolar protein 11 [Source:ZFIN;Acc:ZDB-GENE-030131-419]
68. chd8 ENSDARG00000075543, ENSDARG00000111419 663 1.675 - 0.891 - - - - 0.784 - - chromodomain helicase DNA binding protein 8 [Source:ZFIN;Acc:ZDB-GENE-030131-6320]
69. rbm14a ENSDARG00000012723, ENSDARG00000114603 3802 1.675 - - - - 0.958 - - 0.717 - RNA binding motif protein 14a [Source:ZFIN;Acc:ZDB-GENE-050522-496]
70. serf2 ENSDARG00000074340, ENSDARG00000117120 21385 1.673 - - - 0.970 - 0.703 - - - small EDRK-rich factor 2 [Source:ZFIN;Acc:ZDB-GENE-041108-1]
71. tardbpl ENSDARG00000004452, ENSDARG00000116205 12160 1.672 - - - - - 0.706 - - 0.966 TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB-GENE-031030-1]
72. zgc:55558 ENSDARG00000013161, ENSDARG00000111354 1687 1.671 - - - - 0.839 - - 0.832 - zgc:55558 [Source:ZFIN;Acc:ZDB-GENE-040426-740]
73. arhgap12b ENSDARG00000026482, ENSDARG00000109973 1142 1.67 - 0.883 - - - - 0.787 - - Rho GTPase activating protein 12b [Source:ZFIN;Acc:ZDB-GENE-040426-1727]
74. snrpd3l ENSDARG00000076283 7655 1.669 - - 0.798 - - - 0.871 - - small nuclear ribonucleoprotein D3 polypeptide, like [Source:ZFIN;Acc:ZDB-GENE-030131-5219]
75. vhl ENSDARG00000070617 663 1.668 - 0.883 - - - - - 0.785 - von Hippel-Lindau tumor suppressor [Source:ZFIN;Acc:ZDB-GENE-070112-1042]
76. kif3b ENSDARG00000101120 1158 1.667 - 0.913 - - - - 0.754 - - kinesin family member 3B [Source:ZFIN;Acc:ZDB-GENE-050119-3]
77. PPP1R8 PPP1R8 1897 1.667 - 0.813 - - - - - 0.854 -
78. foxi3a ENSDARG00000055926 749 1.666 - 0.832 - - 0.834 - - - - forkhead box I3a [Source:ZFIN;Acc:ZDB-GENE-031126-3]
79. tada3l ENSDARG00000058220, ENSDARG00000113214, ENSDARG00000115305 2257 1.666 - - - - - - 0.809 0.857 - transcriptional adaptor 3 (NGG1 homolog, yeast)-like [Source:ZFIN;Acc:ZDB-GENE-030131-6725]
80. sf3a3 ENSDARG00000100114 4511 1.664 - - - - - - 0.769 0.895 - splicing factor 3a, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040908-1]
81. usp10 ENSDARG00000103422 4247 1.664 - 0.954 0.710 - - - - - - ubiquitin specific peptidase 10 [Source:ZFIN;Acc:ZDB-GENE-030219-132]
82. srfbp1 ENSDARG00000075323 2262 1.664 - 0.952 0.712 - - - - - - serum response factor binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1991]
83. plxnb1b ENSDARG00000017211 4676 1.664 - - - - 0.846 - - 0.818 - plexin b1b [Source:ZFIN;Acc:ZDB-GENE-090812-4]
84. cry1b cry1b 152 1.663 - 0.911 - - - - 0.752 - -
85. CR954963.1 ENSDARG00000097153 1135 1.659 - - - - 0.839 - - 0.820 -
86. LGR4 ENSDARG00000060542 1222 1.657 - 0.867 - - - - - 0.790 - leucine-rich repeat containing G protein-coupled receptor 4 [Source:ZFIN;Acc:ZDB-GENE-111013-1]
87. si:ch211-214e3.5 ENSDARG00000074270 755 1.655 - 0.936 - - - - 0.719 - - si:ch211-214e3.5 [Source:ZFIN;Acc:ZDB-GENE-050208-19]
88. katnbl1 ENSDARG00000042522 1086 1.654 - 0.888 - - - - 0.766 - - katanin p80 subunit B-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4155]
89. pcdh1gc5 ENSDARG00000104826 10052 1.652 - - 0.713 - - - - - 0.939 protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
90. snrnp70 ENSDARG00000077126 5921 1.65 - - - - 0.843 - - 0.807 - small nuclear ribonucleoprotein 70 (U1) [Source:ZFIN;Acc:ZDB-GENE-040825-2]
91. boc ENSDARG00000074335 4832 1.648 - - - - 0.842 - 0.806 - - BOC cell adhesion associated, oncogene regulated [Source:ZFIN;Acc:ZDB-GENE-030131-6560]
92. kdm1a ENSDARG00000060679 6152 1.648 - - 0.751 - - - - 0.897 - lysine (K)-specific demethylase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7828]
93. rnps1 ENSDARG00000116743 9994 1.647 - - 0.776 0.871 - - - - - RNA binding protein S1, serine-rich domain [Source:NCBI gene;Acc:327020]
94. zgc:112982 ENSDARG00000001829, ENSDARG00000110590, ENSDARG00000111057 2330 1.646 - 0.936 - - - - 0.710 - - zgc:112982 [Source:ZFIN;Acc:ZDB-GENE-050306-55]
95. g2e3 ENSDARG00000001313 1485 1.642 - - - - - - 0.779 0.863 - G2/M-phase specific E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-030616-400]
96. ugt1b4 ENSDARG00000097024 1848 1.642 - 0.826 - - 0.816 - - - - UDP glucuronosyltransferase 1 family, polypeptide B4 [Source:ZFIN;Acc:ZDB-GENE-080227-13]
97. ube2i ube2i 13024 1.639 - - - - 0.805 - 0.834 - -
98. emc9 ENSDARG00000034633 686 1.637 - - - - - - 0.781 0.856 - ER membrane protein complex subunit 9 [Source:ZFIN;Acc:ZDB-GENE-040426-693]
99. plcg1 ENSDARG00000038442 5324 1.631 - - - - - - 0.825 0.806 - phospholipase C, gamma 1 [Source:ZFIN;Acc:ZDB-GENE-030421-3]
100. POLR2H ENSDARG00000038505 2031 1.629 - 0.923 0.706 - - - - - - info polymerase (RNA) II (DNA directed) polypeptide H [Source:ZFIN;Acc:ZDB-GENE-050417-66]

There are 2120 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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