Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for herc3

Gene Name Gene ID Reads Annotation
herc3 ENSDARG00000075887 41 HECT and RLD domain containing E3 ubiquitin protein ligase 3 [Source:ZFIN;Acc:ZDB-GENE-090313-139]










Genes with expression patterns similar to herc3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. herc3 ENSDARG00000075887 41 8 1.000 1.000 1.000 1.000 1.000 - 1.000 1.000 1.000 HECT and RLD domain containing E3 ubiquitin protein ligase 3 [Source:ZFIN;Acc:ZDB-GENE-090313-139]
2. gtpbp2 272 2.473 0.778 0.852 - - 0.843 - - - - GTP binding protein 2
3. CYP46A1 CYP46A1 16 1.882 0.882 1.000 - - - - - - -
4. si:ch211-135f11.1 166 1.858 - - 0.903 - 0.955 - - - - si:ch211-135f11.1, transcript variant X3
5. slco4a1 ENSDARG00000075948 74 1.805 - 0.993 - - 0.812 - - - - solute carrier organic anion transporter family, member 4A1 [Source:ZFIN;Acc:ZDB-GENE-060606-4]
6. si:dkeyp-53d3.6 204 1.798 1.000 - 0.798 - - - - - - si:dkeyp-53d3.6, transcript variant X1
7. cryba2a ENSDARG00000030349 1342 1.792 0.792 1.000 - - - - - - - crystallin, beta A2a [Source:ZFIN;Acc:ZDB-GENE-040625-8]
8. gcnt3 ENSDARG00000060471 37 1.783 - 0.878 0.905 - - - - - - glucosaminyl (N-acetyl) transferase 3, mucin type [Source:ZFIN;Acc:ZDB-GENE-110411-253]
9. zgc:110353 ENSDARG00000039443 80 1.769 0.882 - 0.887 - - - - - - zgc:110353 [Source:ZFIN;Acc:ZDB-GENE-050417-310]
10. hnf4g ENSDARG00000071565 117 1.759 0.878 - - - 0.881 - - - - hepatocyte nuclear factor 4, gamma [Source:ZFIN;Acc:ZDB-GENE-060929-100]
11. sst2 ENSDARG00000014190 617 1.752 0.882 - - - - - - - 0.870 somatostatin 2 [Source:ZFIN;Acc:ZDB-GENE-010219-2]
12. ARSJ ENSDARG00000077590 684 1.745 - 0.935 0.810 - - - - - - arylsulfatase family, member J [Source:ZFIN;Acc:ZDB-GENE-111215-1]
13. cyb5r4 ENSDARG00000020898 119 1.743 - 0.953 0.790 - - - - - - cytochrome b5 reductase 4 [Source:ZFIN;Acc:ZDB-GENE-050522-225]
14. ZNF337_20 ZNF337_20 65 1.728 0.825 - 0.903 - - - - - -
15. BX649494.1 BX649494.1 195 1.728 - 0.853 0.875 - - - - - -
16. mctp2b ENSDARG00000073970 238 1.702 0.870 0.832 - - - - - - - multiple C2 domains, transmembrane 2b [Source:ZFIN;Acc:ZDB-GENE-050506-136]
17. MFAP4_7 MFAP4_7 43 1.697 0.761 - - - 0.936 - - - -
18. LRRC41 LRRC41 11 1.689 - 0.976 - - - - 0.713 - -
19. robo1 ENSDARG00000026784 125 1.681 - 0.968 - - - - 0.713 - - roundabout, axon guidance receptor, homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-000209-3]
20. stat4 ENSDARG00000028731 146 1.668 - 0.760 - - 0.908 - - - - signal transducer and activator of transcription 4 [Source:ZFIN;Acc:ZDB-GENE-030616-264]
21. crmp1 ENSDARG00000056742 332 1.666 0.816 - - - - - 0.850 - - collapsin response mediator protein 1 [Source:ZFIN;Acc:ZDB-GENE-050720-1]
22. CLDN22 CLDN22 114 1.665 - 0.903 - - - - 0.762 - -
23. slc2a12 ENSDARG00000036865, ENSDARG00000113590 148 1.654 - 0.737 - - 0.917 - - - - solute carrier family 2 (facilitated glucose transporter), member 12 [Source:ZFIN;Acc:ZDB-GENE-040426-1513]
24. stk36 ENSDARG00000061095 113 1.648 0.748 0.900 - - - - - - - serine/threonine kinase 36 (fused homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030912-6]
25. BX004890.2 BX004890.2 84 1.646 0.726 0.920 - - - - - - -
26. golim4a ENSDARG00000100977, ENSDARG00000106760, ENSDARG00000113393 144 1.644 - 0.917 - - 0.727 - - - - golgi integral membrane protein 4a [Source:ZFIN;Acc:ZDB-GENE-041026-2]
27. hsh2d ENSDARG00000042908, ENSDARG00000110717 91 1.644 0.814 0.830 - - - - - - - hematopoietic SH2 domain containing [Source:ZFIN;Acc:ZDB-GENE-050410-3]
28. zgc:173770 ENSDARG00000076476 34 1.64 0.792 0.848 - - - - - - - zgc:173770 [Source:ZFIN;Acc:ZDB-GENE-070822-29]
29. foxj2 ENSDARG00000057680 73 1.632 0.837 0.795 - - - - - - - forkhead box J2 [Source:ZFIN;Acc:ZDB-GENE-100922-240]
30. CR774186.1 CR774186.1 92 1.632 0.842 - 0.790 - - - - - -
31. aak1 aak1 81 1.628 - 0.876 - - - - 0.752 - -
32. LPIN1 ENSDARG00000020239, ENSDARG00000112314 75 1.614 - - - - 0.886 - 0.728 - - lipin 1 [Source:ZFIN;Acc:ZDB-GENE-080722-2]
33. cgrrf1 ENSDARG00000037040, ENSDARG00000109850, ENSDARG00000110308 50 1.613 - 0.900 - - - - 0.713 - - cell growth regulator with ring finger domain 1 [Source:ZFIN;Acc:ZDB-GENE-040724-100]
34. CU638868.1 ENSDARG00000115797 487 1.613 0.825 0.788 - - - - - - - transmembrane protein 26a [Source:NCBI gene;Acc:794507]
35. cnot7 ENSDARG00000032116, ENSDARG00000115413 184 1.608 0.882 - - - 0.726 - - - - CCR4-NOT transcription complex, subunit 7 [Source:ZFIN;Acc:ZDB-GENE-061013-29]
36. si:ch211-263m18.4 ENSDARG00000093353 27 1.607 - - 0.894 - - - 0.713 - - si:ch211-263m18.4 [Source:ZFIN;Acc:ZDB-GENE-030131-5341]
37. si:ch211-260m19.8 si:ch211-260m19.8 33 1.591 - - 0.878 - - - 0.713 - -
38. TRIM65 ENSDARG00000077098 991 1.579 - 0.726 - - 0.853 - - - - tripartite motif containing 65 [Source:ZFIN;Acc:ZDB-GENE-130613-1]
39. COL23A1 COL23A1 461 1.577 0.721 0.856 - - - - - - -
40. irg1l ENSDARG00000062788 503 1.577 - 0.799 0.778 - - - - - - immunoresponsive gene 1, like [Source:ZFIN;Acc:ZDB-GENE-061103-301]
41. slc5a6 slc5a6 224 1.565 - 0.811 0.754 - - - - - -
42. TDG TDG 1191 1.558 - 0.770 - - 0.788 - - - -
43. aldh3a2a ENSDARG00000028259 591 1.555 - 0.709 0.846 - - - - - - aldehyde dehydrogenase 3 family, member A2a [Source:ZFIN;Acc:ZDB-GENE-040718-74]
44. prkacbb_1 ENSDARG00000059125 83 1.539 - - 0.826 - - - 0.713 - - protein kinase, cAMP-dependent, catalytic, beta b [Source:ZFIN;Acc:ZDB-GENE-050904-4]
45. si:dkeyp-117h8.2 ENSDARG00000011602 260 1.537 - 0.759 0.778 - - - - - - si:dkeyp-117h8.2 [Source:ZFIN;Acc:ZDB-GENE-041210-321]
46. OMA1 ENSDARG00000090503 19 1.531 - 0.818 - - - - 0.713 - - OMA1 zinc metallopeptidase [Source:ZFIN;Acc:ZDB-GENE-091204-124]
47. wash wash 172 1.52 0.782 0.738 - - - - - - -
48. ef1 1343 1.508 - 0.718 0.790 - - - - - - E74-like factor 1 (ets domain transcription factor), transcript variant X4
49. cryba1l1 ENSDARG00000032929 1868 1.505 0.792 - - - - - 0.713 - - crystallin, beta A1, like 1 [Source:ZFIN;Acc:ZDB-GENE-050417-249]
50. zgc:113389 zgc:113389 123 1.498 0.737 0.761 - - - - - - -
51. SNORA73_1 SNORA73_1 85 1.496 - 0.745 - - 0.751 - - - -
52. CU306817.2 CU306817.2 406 1.478 - - - - 0.708 - 0.770 - -
53. CR855996.2 ENSDARG00000104450 310 1.47 0.712 0.758 - - - - - - - ATPase phospholipid transporting 8B5b [Source:NCBI gene;Acc:563450]
54. CABZ01087562.1 CABZ01087562.1 80 1 - - - - - - 1.000 - -
55. lacc1 ENSDARG00000076914 11 1 - 1.000 - - - - - - - laccase (multicopper oxidoreductase) domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-081104-155]
56. zgc:66024 ENSDARG00000068840, ENSDARG00000068846 37 1 - 1.000 - - - - - - - zgc:66024 [Source:ZFIN;Acc:ZDB-GENE-040426-1511]
57. zgc:152670 ENSDARG00000017038, ENSDARG00000117151 587 1 - 1.000 - - - - - - - zgc:152670 [Source:ZFIN;Acc:ZDB-GENE-060929-954]
58. si:dkey-45k15.1 ENSDARG00000061714 32 1 - 1.000 - - - - - - - si:dkey-45k15.1 [Source:ZFIN;Acc:ZDB-GENE-081107-67]
59. MAP3K13 ENSDARG00000009493 8 1 - 1.000 - - - - - - - mitogen-activated protein kinase kinase kinase 13 [Source:HGNC Symbol;Acc:HGNC:6852]
60. SH3TC1 ENSDARG00000077330 8 1 - 1.000 - - - - - - - SH3 domain and tetratricopeptide repeats 1 [Source:HGNC Symbol;Acc:HGNC:26009]
61. pax1b ENSDARG00000073814 105 1 - 1.000 - - - - - - - paired box 1b [Source:ZFIN;Acc:ZDB-GENE-060503-372]
62. si:dkey-211g8.6 ENSDARG00000063088 19 1 - 1.000 - - - - - - - si:dkey-211g8.6 [Source:ZFIN;Acc:ZDB-GENE-060503-813]
63. btr16 ENSDARG00000028850 21 1 - 1.000 - - - - - - - bloodthirsty-related gene family, member 16 [Source:ZFIN;Acc:ZDB-GENE-060929-1066]
64. si:dkey-111b14.5 si:dkey-111b14.5 10 1 - 1.000 - - - - - - -
65. RCVRN RCVRN 66 1 - 1.000 - - - - - - -
66. MDFI ENSDARG00000089564 8 1 - 1.000 - - - - - - - MyoD family inhibitor [Source:HGNC Symbol;Acc:HGNC:6967]
67. fam86a fam86a 174 1 - 1.000 - - - - - - -
68. ENKD1 ENSDARG00000043550 44 1 - 1.000 - - - - - - - enkurin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25246]
69. zgc:171220 ENSDARG00000102959 164 1 - 1.000 - - - - - - - zgc:171220 [Source:ZFIN;Acc:ZDB-GENE-071004-11]
70. CABZ01069022.1 ENSDARG00000105692 16 1 - 1.000 - - - - - - - si:cabz01069022.1 [Source:NCBI gene;Acc:100332864]
71. si:dkey-96l17.6 ENSDARG00000094540 4 1 - 1.000 - - - - - - - si:dkey-96l17.6 [Source:ZFIN;Acc:ZDB-GENE-060526-350]
72. si:ch211-202h22.9 ENSDARG00000079980 2 1 - 1.000 - - - - - - - si:ch211-202h22.9 [Source:ZFIN;Acc:ZDB-GENE-030131-1143]
73. fam178a fam178a 29 1 - 1.000 - - - - - - -
74. mybpc1 ENSDARG00000045560 26 1 - 1.000 - - - - - - - myosin binding protein C, slow type [Source:ZFIN;Acc:ZDB-GENE-041114-196]
75. si:busm1-228j01.5 si:busm1-228j01.5 9 1 - 1.000 - - - - - - -
76. upk1a ENSDARG00000021866 9 1 - 1.000 - - - - - - - uroplakin 1a [Source:ZFIN;Acc:ZDB-GENE-060421-2603]
77. NUGGC NUGGC 9 1 - 1.000 - - - - - - -
78. rnh1 ENSDARG00000086631 14 1 - 1.000 - - - - - - - ribonuclease/angiogenin inhibitor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4718]
79. tspan15 ENSDARG00000039455, ENSDARG00000110074, ENSDARG00000112969 76 1 - 1.000 - - - - - - - tetraspanin 15 [Source:ZFIN;Acc:ZDB-GENE-050417-295]
80. gfpt1 ENSDARG00000057465 14 1 - 1.000 - - - - - - - glutamine--fructose-6-phosphate transaminase 1 [Source:ZFIN;Acc:ZDB-GENE-070423-1]
81. foxg1c ENSDARG00000068380, ENSDARG00000114414 25 1 - 1.000 - - - - - - - forkhead box G1c [Source:ZFIN;Acc:ZDB-GENE-050419-26]
82. si:ch211-279m15.1 si:ch211-279m15.1 67 1 - - - - - - 1.000 - -
83. olah ENSDARG00000058502 100 1 - 1.000 - - - - - - - oleoyl-ACP hydrolase [Source:ZFIN;Acc:ZDB-GENE-060312-17]
84. mylkb ENSDARG00000004753 95 1 - 1.000 - - - - - - - myosin light chain kinase b [Source:ZFIN;Acc:ZDB-GENE-041111-150]
85. grik5 ENSDARG00000101449, ENSDARG00000111384 75 1 - - - - - - 1.000 - - glutamate receptor, ionotropic, kainate 5 [Source:ZFIN;Acc:ZDB-GENE-070821-6]
86. si:ch211-217k17.8 ENSDARG00000095434 3 1 - 1.000 - - - - - - - si:ch211-217k17.8 [Source:ZFIN;Acc:ZDB-GENE-031010-46]
87. CAPN2 CAPN2 1497 1 - 1.000 - - - - - - -
88. p2rx3a ENSDARG00000010477, ENSDARG00000115270 6 1 - 1.000 - - - - - - - purinergic receptor P2X, ligand-gated ion channel, 3a [Source:ZFIN;Acc:ZDB-GENE-000427-3]
89. stpg1 ENSDARG00000103765 19 1 - 1.000 - - - - - - - sperm-tail PG-rich repeat containing 1 [Source:ZFIN;Acc:ZDB-GENE-070705-373]
90. si:ch211-278p9.1 ENSDARG00000087532 18 1 - 1.000 - - - - - - - si:ch211-278p9.1 [Source:ZFIN;Acc:ZDB-GENE-081028-46]
91. si:dkey-88n24.8 ENSDARG00000091095 9 1 - 1.000 - - - - - - - si:dkey-88n24.8 [Source:ZFIN;Acc:ZDB-GENE-041014-92]
92. tmprss4b ENSDARG00000012860 6 1 - 1.000 - - - - - - - transmembrane serine protease 4b [Source:ZFIN;Acc:ZDB-GENE-030131-5862]
93. BX321875.4 ENSDARG00000114661 5 1 - 1.000 - - - - - - -
94. gphb5 ENSDARG00000027472 8 1 - 1.000 - - - - - - - glycoprotein hormone beta 5 [Source:ZFIN;Acc:ZDB-GENE-090319-4]
95. si:dkey-149f22.2 si:dkey-149f22.2 8 1 - 1.000 - - - - - - -
96. pip5k1ca ENSDARG00000076001 53 1 - - - - - - 1.000 - - phosphatidylinositol-4-phosphate 5-kinase, type I, gamma a [Source:ZFIN;Acc:ZDB-GENE-050208-358]
97. CU929036.1 CU929036.1 7 1 - 1.000 - - - - - - -
98. cidea ENSDARG00000098245 2 1 - 1.000 - - - - - - - cell death-inducing DFFA-like effector a [Source:ZFIN;Acc:ZDB-GENE-091204-339]
99. baiap2l1a ENSDARG00000029305 30 1 - 1.000 - - - - - - - BAI1-associated protein 2-like 1a [Source:ZFIN;Acc:ZDB-GENE-031201-1]
100. TPMT TPMT 138 1 - 1.000 - - - - - - -

There are 1259 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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