Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for herc2

Gene Name Gene ID Reads Annotation
herc2 ENSDARG00000073841 486 HECT and RLD domain containing E3 ubiquitin protein ligase 2 [Source:ZFIN;Acc:ZDB-GENE-070718-6]










Genes with expression patterns similar to herc2

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. herc2 ENSDARG00000073841 486 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 HECT and RLD domain containing E3 ubiquitin protein ligase 2 [Source:ZFIN;Acc:ZDB-GENE-070718-6]
2. inpp5e ENSDARG00000103926 567 1.784 - - 0.984 - - 0.800 - - - inositol polyphosphate-5-phosphatase E [Source:ZFIN;Acc:ZDB-GENE-050809-23]
3. CU571255.1 CU571255.1 902 1.727 - 0.746 0.981 - - - - - -
4. CAPN1 ENSDARG00000055338 683 1.721 - - 0.959 - - 0.762 - - - calpain 1 [Source:HGNC Symbol;Acc:HGNC:1476]
5. BX571794.1 ENSDARG00000097619 376 1.708 - 0.742 0.966 - - - - - -
6. rapgef1a ENSDARG00000043593 416 1.687 - - 0.979 - - - 0.708 - - Rap guanine nucleotide exchange factor (GEF) 1a [Source:ZFIN;Acc:ZDB-GENE-081105-26]
7. lysmd3 ENSDARG00000024693 754 1.668 - - 0.953 - - - 0.715 - - LysM, putative peptidoglycan-binding, domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-040625-88]
8. zgc:136439 ENSDARG00000009267 720 1.649 - 0.704 0.945 - - - - - - zgc:136439 [Source:ZFIN;Acc:ZDB-GENE-060421-2858]
9. hsd17b14 ENSDARG00000054842 1394 1.643 - - 0.941 0.702 - - - - - hydroxysteroid (17-beta) dehydrogenase 14 [Source:ZFIN;Acc:ZDB-GENE-040801-24]
10. per1b ENSDARG00000012499 320 1.555 0.756 0.799 - - - - - - - period circadian clock 1b [Source:ZFIN;Acc:ZDB-GENE-040419-1]
11. GSTK1_1 GSTK1_1 316 1.548 - - - 0.750 - - - 0.798 -
12. agpat6 agpat6 587 1.547 - - - - - - 0.803 0.744 -
13. rab34a ENSDARG00000045628, ENSDARG00000113347 358 1.535 - - - - - 0.706 - 0.829 - RAB34, member RAS oncogene family a [Source:ZFIN;Acc:ZDB-GENE-041010-197]
14. alpk3a ENSDARG00000078989 1992 1.534 0.784 0.750 - - - - - - - alpha-kinase 3a [Source:ZFIN;Acc:ZDB-GENE-050419-48]
15. cox4i2 ENSDARG00000022509 362 1.529 - 0.748 - - - - 0.781 - - cytochrome c oxidase subunit 4I2 [Source:ZFIN;Acc:ZDB-GENE-040426-1775]
16. TRAFD1 ENSDARG00000075123, ENSDARG00000109953 358 1.526 - - - - - 0.743 - 0.783 - TRAF-type zinc finger domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-070410-43]
17. zgc:63972 ENSDARG00000054288, ENSDARG00000112978 78 1.52 - - - - - - 0.776 0.744 - zgc:63972 [Source:ZFIN;Acc:ZDB-GENE-040426-1320]
18. tmtc2 tmtc2 798 1.503 - - - 0.763 - - - 0.740 -
19. rchy1 ENSDARG00000016710, ENSDARG00000109668, ENSDARG00000115626 477 1.5 - - - - - 0.744 0.756 - - ring finger and CHY zinc finger domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040801-73]
20. si:ch211-241o7.5 si:ch211-241o7.5 1387 1.494 - 0.722 0.772 - - - - - -
21. wbp2 ENSDARG00000056605 101 1.493 - - - - - 0.717 0.776 - - WW domain binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-050522-137]
22. C10H21orf59 275 1.491 - 0.720 - 0.771 - - - - - c10h21orf59 homolog (H. sapiens)
23. trmt5 ENSDARG00000069278 228 1.489 - - - 0.781 - 0.708 - - - TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-5978]
24. mrpl3 ENSDARG00000103318 2308 1.486 0.704 - 0.782 - - - - - - mitochondrial ribosomal protein L3 [Source:ZFIN;Acc:ZDB-GENE-030131-8227]
25. asb12b ENSDARG00000037558, ENSDARG00000113049, ENSDARG00000116721 378 1.485 0.777 0.708 - - - - - - - ankyrin repeat and SOCS box-containing 12b [Source:ZFIN;Acc:ZDB-GENE-040822-25]
26. ghrb ENSDARG00000007671 1082 1.482 0.749 - - - - - 0.733 - - growth hormone receptor b [Source:ZFIN;Acc:ZDB-GENE-071119-4]
27. usp5_1 ENSDARG00000014517, ENSDARG00000114598 5050 1.478 0.723 0.755 - - - - - - - ubiquitin specific peptidase 5 (isopeptidase T) [Source:ZFIN;Acc:ZDB-GENE-040426-2584]
28. dpp9 ENSDARG00000052606 2279 1.477 - 0.708 - - - 0.769 - - - dipeptidyl-peptidase 9 [Source:ZFIN;Acc:ZDB-GENE-061013-777]
29. sema4ab ENSDARG00000062352 409 1.469 - 0.766 - - - 0.703 - - - sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ab [Source:ZFIN;Acc:ZDB-GENE-060503-363]
30. ehd1b ENSDARG00000014793, ENSDARG00000110243, ENSDARG00000110919 2496 1.469 0.733 0.736 - - - - - - - EH-domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2069]
31. znrf3 ENSDARG00000062573 205 1.468 - - - - - - 0.711 0.757 - zinc and ring finger 3 [Source:ZFIN;Acc:ZDB-GENE-070705-263]
32. MRAS ENSDARG00000075285 260 1.464 - - - 0.728 - - 0.736 - - muscle RAS oncogene homolog [Source:HGNC Symbol;Acc:HGNC:7227]
33. tk2 ENSDARG00000046127, ENSDARG00000111531 204 1.46 - - - - - 0.712 0.748 - - thymidine kinase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-040718-243]
34. tbl3 ENSDARG00000052344 1530 1.459 0.703 0.756 - - - - - - - transducin (beta)-like 3 [Source:ZFIN;Acc:ZDB-GENE-041114-104]
35. zgc:113363 ENSDARG00000101206 474 1.458 - 0.712 - - - - 0.746 - - zgc:113363 [Source:ZFIN;Acc:ZDB-GENE-050327-7]
36. ptbp1b ENSDARG00000031907, ENSDARG00000115714 3808 1.453 - - 0.733 - - - 0.720 - - polypyrimidine tract binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-9796]
37. CCRN4L CCRN4L 518 1.45 - 0.749 - - - - - 0.701 -
38. vwde ENSDARG00000103443 5758 1.45 0.701 0.749 - - - - - - - von Willebrand factor D and EGF domains [Source:ZFIN;Acc:ZDB-GENE-060929-1226]
39. si:ch211-214b16.4 ENSDARG00000074345 261 1.448 - 0.742 - - - - 0.706 - - si:ch211-214b16.4 [Source:ZFIN;Acc:ZDB-GENE-081105-53]
40. CCDC86 CCDC86 2023 1.442 0.720 0.722 - - - - - - -
41. mef2cb ENSDARG00000009418 1124 1.438 0.705 0.733 - - - - - - - myocyte enhancer factor 2cb [Source:ZFIN;Acc:ZDB-GENE-040901-7]
42. si:dkey-197c15.6 ENSDARG00000079401 745 1.435 0.709 - - 0.726 - - - - - si:dkey-197c15.6 [Source:ZFIN;Acc:ZDB-GENE-060810-147]
43. mrps16 ENSDARG00000098972, ENSDARG00000115452 2085 1.432 - 0.708 - - - - 0.724 - - mitochondrial ribosomal protein S16 [Source:ZFIN;Acc:ZDB-GENE-041010-123]
44. cep85l ENSDARG00000020777 1121 1.42 0.701 0.719 - - - - - - - centrosomal protein 85, like [Source:ZFIN;Acc:ZDB-GENE-041014-309]
45. BX649554.3_1 BX649554.3_1 1071 0.984 - - 0.984 - - - - - -
46. CMTM8 CMTM8 71 0.984 - - 0.984 - - - - - -
47. TRIM14_6 TRIM14_6 342 0.984 - - 0.984 - - - - - -
48. map3k10 ENSDARG00000055672 284 0.984 - - 0.984 - - - - - - mitogen-activated protein kinase kinase kinase 10 [Source:ZFIN;Acc:ZDB-GENE-050419-112]
49. GPSM3 GPSM3 257 0.984 - - 0.984 - - - - - -
50. RNase_MRP RNase_MRP 118 0.984 - - 0.984 - - - - - -
51. msgn1 ENSDARG00000070546 188 0.984 - - 0.984 - - - - - - mesogenin 1 [Source:ZFIN;Acc:ZDB-GENE-030722-1]
52. zgc:158260 ENSDARG00000101703 103 0.983 - - 0.983 - - - - - - zgc:158260 [Source:ZFIN;Acc:ZDB-GENE-061201-24]
53. slc35c1 ENSDARG00000104669 65 0.983 - - 0.983 - - - - - - solute carrier family 35 (GDP-fucose transporter), member C1 [Source:ZFIN;Acc:ZDB-GENE-041212-11]
54. TRAK1 212 0.983 - - 0.983 - - - - - - trafficking protein, kinesin binding 1, transcript variant X6
55. wdr66 ENSDARG00000059855 276 0.983 - - 0.983 - - - - - - WD repeat domain 66 [Source:ZFIN;Acc:ZDB-GENE-060526-328]
56. CR942805.1 CR942805.1 94 0.983 - - 0.983 - - - - - -
57. CABZ01113061.1 CABZ01113061.1 51 0.983 - - 0.983 - - - - - -
58. il2rb ENSDARG00000075720 116 0.982 - - 0.982 - - - - - - interleukin 2 receptor, beta [Source:ZFIN;Acc:ZDB-GENE-080108-2]
59. PLA2G3_1 PLA2G3_1 411 0.982 - - 0.982 - - - - - -
60. jag1b ENSDARG00000013168 1002 0.981 - - 0.981 - - - - - - jagged 1b [Source:ZFIN;Acc:ZDB-GENE-011128-4]
61. F8A3 F8A3 646 0.981 - - 0.981 - - - - - -
62. ndst2b ENSDARG00000060678 453 0.981 - - 0.981 - - - - - - N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2b [Source:ZFIN;Acc:ZDB-GENE-100430-2]
63. TATDN3 ENSDARG00000044072 914 0.981 - - 0.981 - - - - - - TatD DNase domain containing 3 [Source:HGNC Symbol;Acc:HGNC:27010]
64. brf1a ENSDARG00000017835 206 0.98 - - 0.980 - - - - - - BRF1, RNA polymerase III transcription initiation factor a [Source:ZFIN;Acc:ZDB-GENE-030131-6334]
65. DACT3 DACT3 766 0.98 - - 0.980 - - - - - -
66. CAMSAP2 CAMSAP2 109 0.979 - - 0.979 - - - - - -
67. CYP27A1_1 CYP27A1_1 329 0.979 - - 0.979 - - - - - -
68. ATF6B 960 0.979 - - 0.979 - - - - - - activating transcription factor 6 beta
69. mns1 ENSDARG00000060169, ENSDARG00000110835 283 0.978 - - 0.978 - - - - - - meiosis-specific nuclear structural 1 [Source:ZFIN;Acc:ZDB-GENE-030521-42]
70. bcl6a ENSDARG00000070864, ENSDARG00000111395, ENSDARG00000112502, ENSDARG00000116260 657 0.978 - - 0.978 - - - - - - B-cell CLL/lymphoma 6a (zinc finger protein 51) [Source:ZFIN;Acc:ZDB-GENE-040426-1696]
71. mxra5b ENSDARG00000076309 190 0.978 - - 0.978 - - - - - - matrix-remodelling associated 5b [Source:ZFIN;Acc:ZDB-GENE-081104-119]
72. pcdh8 ENSDARG00000006467 317 0.976 - - 0.976 - - - - - - protocadherin 8 [Source:ZFIN;Acc:ZDB-GENE-980526-242]
73. zgc:66484 ENSDARG00000030478 167 0.976 - - 0.976 - - - - - - zgc:66484 [Source:ZFIN;Acc:ZDB-GENE-030131-5768]
74. twist2 ENSDARG00000078266 499 0.975 - - 0.975 - - - - - - twist2 [Source:ZFIN;Acc:ZDB-GENE-980526-235]
75. vsig10 ENSDARG00000058605, ENSDARG00000111389 361 0.974 - - 0.974 - - - - - - V-set and immunoglobulin domain containing 10 [Source:ZFIN;Acc:ZDB-GENE-030131-7476]
76. nfkb2 ENSDARG00000038687, ENSDARG00000112821 468 0.973 - - 0.973 - - - - - - nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) [Source:ZFIN;Acc:ZDB-GENE-030131-6701]
77. PLCE1 ENSDARG00000087921 277 0.973 - - 0.973 - - - - - - phospholipase C, epsilon 1 [Source:ZFIN;Acc:ZDB-GENE-061212-4]
78. mphosph10 ENSDARG00000012495 1679 0.973 - - 0.973 - - - - - - M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) [Source:ZFIN;Acc:ZDB-GENE-030131-2146]
79. CABZ01073174.1 CABZ01073174.1 581 0.972 - - 0.972 - - - - - -
80. FBLN1 ENSDARG00000103311 877 0.971 - - 0.971 - - - - - - fibulin 1 [Source:NCBI gene;Acc:30240]
81. agfg1b ENSDARG00000019526 472 0.971 - - 0.971 - - - - - - ArfGAP with FG repeats 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1520]
82. alg6 ENSDARG00000017617 483 0.971 - - 0.971 - - - - - - asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase) [Source:ZFIN;Acc:ZDB-GENE-040808-45]
83. CABZ01073032.1 CABZ01073032.1 125 0.971 - - 0.971 - - - - - -
84. wnt5b ENSDARG00000102464 1662 0.968 - - 0.968 - - - - - - wingless-type MMTV integration site family, member 5b [Source:ZFIN;Acc:ZDB-GENE-980526-87]
85. zgc:113265 318 0.967 - - 0.967 - - - - - - zgc:113265, transcript variant X3
86. Metazoa_SRP_8 Metazoa_SRP_8 153 0.967 - - 0.967 - - - - - -
87. zgc:153952 739 0.966 - - 0.966 - - - - - - zgc:153952, transcript variant X1
88. trub2 ENSDARG00000028379 783 0.966 - - 0.966 - - - - - - TruB pseudouridine (psi) synthase family member 2 [Source:ZFIN;Acc:ZDB-GENE-040704-41]
89. wdr73 ENSDARG00000023152, ENSDARG00000111497 217 0.966 - - 0.966 - - - - - - WD repeat domain 73 [Source:ZFIN;Acc:ZDB-GENE-050417-126]
90. cog2 ENSDARG00000004037 462 0.966 - - 0.966 - - - - - - component of oligomeric golgi complex 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2671]
91. cc2d2a ENSDARG00000090971 363 0.966 - - 0.966 - - - - - - coiled-coil and C2 domain containing 2A [Source:ZFIN;Acc:ZDB-GENE-030131-2291]
92. zgc:113377 335 0.966 - - 0.966 - - - - - - zgc:113377, transcript variant X2
93. rcbtb2 ENSDARG00000090687 1658 0.965 - - 0.965 - - - - - - regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 [Source:ZFIN;Acc:ZDB-GENE-071016-3]
94. cpm ENSDARG00000011769, ENSDARG00000113736 1113 0.965 - - 0.965 - - - - - - carboxypeptidase M [Source:ZFIN;Acc:ZDB-GENE-041210-191]
95. golph3 ENSDARG00000052851, ENSDARG00000109334 2114 0.965 - - 0.965 - - - - - - golgi phosphoprotein 3 [Source:ZFIN;Acc:ZDB-GENE-041010-209]
96. CU855890.3 CU855890.3 307 0.965 - - 0.965 - - - - - -
97. arhgap29b ENSDARG00000017748 812 0.965 - - 0.965 - - - - - - Rho GTPase activating protein 29b [Source:ZFIN;Acc:ZDB-GENE-031010-44]
98. trpm7 ENSDARG00000036232 925 0.964 - - 0.964 - - - - - - transient receptor potential cation channel, subfamily M, member 7 [Source:ZFIN;Acc:ZDB-GENE-021115-2]
99. antxr1c ENSDARG00000063612 3203 0.964 - - 0.964 - - - - - - ANTXR cell adhesion molecule 1c [Source:ZFIN;Acc:ZDB-GENE-090514-5]
100. rgs17 ENSDARG00000039435 590 0.964 - - 0.964 - - - - - - regulator of G protein signaling 17 [Source:ZFIN;Acc:ZDB-GENE-040718-229]

There are 1209 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA