Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for her6

Gene Name Gene ID Reads Annotation
her6 ENSDARG00000006514, ENSDARG00000111099 7477 hairy-related 6 [Source:ZFIN;Acc:ZDB-GENE-980526-144]










Genes with expression patterns similar to her6

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. her6 ENSDARG00000006514, ENSDARG00000111099 7477 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 hairy-related 6 [Source:ZFIN;Acc:ZDB-GENE-980526-144]
2. C18H12orf23 C18H12orf23 5362 3.541 - 0.797 - - 0.765 0.981 0.998 - -
3. hoxb3a ENSDARG00000029263 5493 2.639 0.929 0.781 - - - 0.929 - - - homeobox B3a [Source:ZFIN;Acc:ZDB-GENE-990415-104]
4. kpna2 ENSDARG00000038066 7954 2.575 0.873 - - - - - 0.998 - 0.704 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) [Source:ZFIN;Acc:ZDB-GENE-040718-22]
5. axin2 ENSDARG00000100149 4223 2.55 - 0.724 - - 0.857 0.969 - - - axin 2 (conductin, axil) [Source:ZFIN;Acc:ZDB-GENE-000403-2]
6. dnajc15 ENSDARG00000038309 1274 2.525 - 0.726 - - 0.828 0.971 - - - DnaJ (Hsp40) homolog, subfamily C, member 15 [Source:ZFIN;Acc:ZDB-GENE-040801-216]
7. nkd1 ENSDARG00000020053 4450 1.972 - - - - - 0.973 0.999 - - naked cuticle homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-061108-3]
8. MAF1 ENSDARG00000013122 6899 1.945 - - - - - 0.947 0.998 - - MAF1 homolog, negative regulator of RNA polymerase III [Source:ZFIN;Acc:ZDB-GENE-040426-2788]
9. ptprsa ENSDARG00000059738, ENSDARG00000110940 7232 1.925 0.926 - - - - - 0.999 - - protein tyrosine phosphatase, receptor type, s, a [Source:ZFIN;Acc:ZDB-GENE-020107-3]
10. C7H16orf87 C7H16orf87 5197 1.925 0.956 - - - - 0.969 - - -
11. trim33 ENSDARG00000016181 1718 1.896 0.931 - - - - 0.965 - - - tripartite motif containing 33 [Source:ZFIN;Acc:ZDB-GENE-030131-2773]
12. cpne1 ENSDARG00000075536 4063 1.89 0.923 - - - - 0.967 - - - copine I [Source:ZFIN;Acc:ZDB-GENE-030131-3562]
13. caprin1a ENSDARG00000009346, ENSDARG00000112212 9675 1.858 - 0.860 - - - - 0.998 - - cell cycle associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-226]
14. psmc2 ENSDARG00000020101 8095 1.829 0.855 - - - - 0.974 - - - proteasome 26S subunit, ATPase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1327]
15. ube2v1 ENSDARG00000041875 5739 1.825 0.940 - - - 0.885 - - - - ubiquitin-conjugating enzyme E2 variant 1 [Source:ZFIN;Acc:ZDB-GENE-051030-102]
16. SERP1_1 ENSDARG00000076223 6668 1.822 0.918 - - - - 0.904 - - - stress associated endoplasmic reticulum protein 1 [Source:HGNC Symbol;Acc:HGNC:10759]
17. G3BP2 ENSDARG00000014790 9380 1.813 - - - - 0.814 - 0.999 - - GTPase activating protein (SH3 domain) binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070112-1972]
18. cbx3a ENSDARG00000003860 4922 1.811 - - - - 0.841 0.970 - - - chromobox homolog 3a (HP1 gamma homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-1158]
19. kdm1a ENSDARG00000060679 6152 1.806 - - - - 0.835 0.971 - - - lysine (K)-specific demethylase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7828]
20. zgc:158387 zgc:158387 9147 1.803 - - - - - 0.810 0.993 - -
21. fbxo11a_1 ENSDARG00000061631, ENSDARG00000102294, ENSDARG00000112746 10566 1.797 - - - - 0.825 0.972 - - - F-box protein 11a [Source:ZFIN;Acc:ZDB-GENE-061103-70]
22. brms1la ENSDARG00000006235 2011 1.794 - - - - 0.842 0.952 - - - BRMS1 like transcriptional repressor a [Source:ZFIN;Acc:ZDB-GENE-050913-49]
23. Mar-07 Mar-07 2926 1.78 - 0.800 - - - 0.980 - - -
24. poc1bl ENSDARG00000012745 2451 1.779 0.927 - - - - 0.852 - - - POC1 centriolar protein homolog B (Chlamydomonas), like [Source:ZFIN;Acc:ZDB-GENE-050306-41]
25. palm3 ENSDARG00000071215 1776 1.772 - - - - 0.823 0.949 - - - paralemmin 3 [Source:ZFIN;Acc:ZDB-GENE-061215-74]
26. dnajc5ab ENSDARG00000004836 2923 1.742 - 0.773 - - - 0.969 - - - DnaJ (Hsp40) homolog, subfamily C, member 5ab [Source:ZFIN;Acc:ZDB-GENE-081021-2]
27. atl3 ENSDARG00000004270 2806 1.736 0.931 - - - 0.805 - - - - atlastin 3 [Source:ZFIN;Acc:ZDB-GENE-041010-109]
28. psmc1a ENSDARG00000030537 2799 1.728 0.926 0.802 - - - - - - - proteasome 26S subunit, ATPase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-8730]
29. capn2b ENSDARG00000055592 5431 1.723 - - - - 0.821 0.902 - - - calpain 2, (m/II) large subunit b [Source:ZFIN;Acc:ZDB-GENE-050522-84]
30. nrf1 ENSDARG00000000018 4683 1.715 - - - - - 0.969 - 0.746 - nuclear respiratory factor 1 [Source:ZFIN;Acc:ZDB-GENE-001221-1]
31. ppp1r3ca ENSDARG00000071005, ENSDARG00000111817, ENSDARG00000112962 2641 1.707 - 0.729 - - - 0.978 - - - protein phosphatase 1, regulatory subunit 3Ca [Source:ZFIN;Acc:ZDB-GENE-040718-70]
32. phgdh ENSDARG00000001873 8325 1.702 0.941 0.761 - - - - - - - phosphoglycerate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030131-647]
33. prdx6 ENSDARG00000043511, ENSDARG00000116085 3456 1.701 - - - - - - 0.985 0.716 - peroxiredoxin 6 [Source:ZFIN;Acc:ZDB-GENE-040426-1778]
34. epc1 epc1 1164 1.699 - - - - - 0.965 - 0.734 -
35. get4 ENSDARG00000024398 1818 1.693 0.949 0.744 - - - - - - - golgi to ER traffic protein 4 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-5399]
36. TTYH3 TTYH3 1841 1.681 - 0.711 - - - 0.970 - - -
37. dnajc11 1939 1.68 0.950 0.730 - - - - - - - DnaJ heat shock protein family (Hsp40) member C11
38. MARK4 ENSDARG00000024966 3377 1.676 0.922 - - - - - - 0.754 - microtubule affinity regulating kinase 4 [Source:HGNC Symbol;Acc:HGNC:13538]
39. fgfr2 ENSDARG00000058115 6743 1.675 0.935 - - - - - - - 0.740 fibroblast growth factor receptor 2 [Source:ZFIN;Acc:ZDB-GENE-030323-1]
40. eif2s1b ENSDARG00000052178 11961 1.671 0.835 - - - 0.836 - - - - eukaryotic translation initiation factor 2, subunit 1 alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-283]
41. ITFG3 ITFG3 1803 1.67 0.917 0.753 - - - - - - -
42. ebna1bp2 ENSDARG00000054980 4621 1.669 - - - - 0.836 - - 0.833 - EBNA1 binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6989]
43. eif2s3 ENSDARG00000008292 17051 1.667 - 0.754 - - - 0.913 - - - eukaryotic translation initiation factor 2, subunit 3 gamma [Source:ZFIN;Acc:ZDB-GENE-030131-5552]
44. mtpn ENSDARG00000104018 4264 1.662 - - - - - 0.924 - 0.738 - myotrophin [Source:ZFIN;Acc:ZDB-GENE-040426-2166]
45. sgcb ENSDARG00000052341 4168 1.662 0.951 0.711 - - - - - - - sarcoglycan, beta (dystrophin-associated glycoprotein) [Source:ZFIN;Acc:ZDB-GENE-030131-6695]
46. ncor1 ENSDARG00000035285, ENSDARG00000113129 4234 1.657 0.949 - - - - - - - 0.708 nuclear receptor corepressor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-993]
47. stmn1a ENSDARG00000004169 21169 1.657 - - - - - 0.946 - - 0.711 stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
48. plecb ENSDARG00000021987 13621 1.639 - 0.770 - - - 0.869 - - - plectin b [Source:ZFIN;Acc:ZDB-GENE-100917-2]
49. zgc:55461 ENSDARG00000116706, ENSDARG00000117112 2835 1.635 - 0.791 - - 0.844 - - - - zgc:55461 [Source:ZFIN;Acc:ZDB-GENE-040426-2879]
50. abracl ENSDARG00000042876 10208 1.615 0.818 - - - - 0.797 - - - ABRA C-terminal like [Source:ZFIN;Acc:ZDB-GENE-030131-8594]
51. mrps15 ENSDARG00000109289 3258 1.614 - 0.799 - - 0.815 - - - - mitochondrial ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-040718-188]
52. ppp4ca ENSDARG00000070570 8395 1.606 - 0.751 - - 0.855 - - - - protein phosphatase 4, catalytic subunit a [Source:ZFIN;Acc:ZDB-GENE-030131-4433]
53. casc5 1487 1.605 - - - - 0.842 - - 0.763 - cancer susceptibility candidate 5, transcript variant X3
54. pno1 ENSDARG00000008502 4547 1.603 - 0.764 - - 0.839 - - - - partner of NOB1 homolog [Source:ZFIN;Acc:ZDB-GENE-040426-1419]
55. znf865 ENSDARG00000036698 15532 1.601 - 0.726 - - 0.875 - - - - zinc finger protein 865 [Source:ZFIN;Acc:ZDB-GENE-060503-896]
56. pygma ENSDARG00000055518 15972 1.599 - 0.725 - - - 0.874 - - - phosphorylase, glycogen, muscle A [Source:ZFIN;Acc:ZDB-GENE-050522-482]
57. dpp9 ENSDARG00000052606 2279 1.599 - 0.774 - - 0.825 - - - - dipeptidyl-peptidase 9 [Source:ZFIN;Acc:ZDB-GENE-061013-777]
58. emc2 ENSDARG00000003308, ENSDARG00000114541 7141 1.596 0.864 0.732 - - - - - - - ER membrane protein complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040625-82]
59. dhfr ENSDARG00000004251 1824 1.59 - 0.759 - - 0.831 - - - - dihydrofolate reductase [Source:ZFIN;Acc:ZDB-GENE-010406-5]
60. neo1 neo1 4056 1.577 - 0.810 - - - - - - 0.767
61. sfpq ENSDARG00000011564, ENSDARG00000115611 15626 1.569 - - - - - 0.867 - - 0.702 splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
62. apc ENSDARG00000058868 2605 1.565 - 0.727 - - 0.838 - - - - adenomatous polyposis coli [Source:ZFIN;Acc:ZDB-GENE-031112-7]
63. ppm1bb ENSDARG00000011496 10196 1.56 - - - - 0.765 - 0.795 - - protein phosphatase, Mg2+/Mn2+ dependent, 1Bb [Source:ZFIN;Acc:ZDB-GENE-041114-185]
64. rab5if ENSDARG00000074790 8807 1.554 - 0.795 - - - - - 0.759 - RAB5 interacting factor [Source:ZFIN;Acc:ZDB-GENE-030131-5938]
65. paxip1 ENSDARG00000005606 1417 1.554 - - - - 0.818 - - 0.736 - PAX interacting (with transcription-activation domain) protein 1 [Source:ZFIN;Acc:ZDB-GENE-041010-214]
66. eif3m ENSDARG00000013931 8117 1.553 - 0.772 - - 0.781 - - - - eukaryotic translation initiation factor 3, subunit M [Source:ZFIN;Acc:ZDB-GENE-040426-2643]
67. mars ENSDARG00000034396 3618 1.55 - 0.770 - - 0.780 - - - - methionyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030219-83]
68. rfc1 ENSDARG00000054799 1416 1.55 - - - - 0.818 - - - 0.732 replication factor C (activator 1) 1 [Source:ZFIN;Acc:ZDB-GENE-070410-99]
69. fen1 ENSDARG00000011404 3358 1.55 - 0.708 - - 0.842 - - - - flap structure-specific endonuclease 1 [Source:ZFIN;Acc:ZDB-GENE-031112-11]
70. zgc:123105 ENSDARG00000003127 3061 1.537 - 0.705 - - 0.832 - - - - zgc:123105 [Source:ZFIN;Acc:ZDB-GENE-051113-272]
71. si:dkeyp-120h9.1 ENSDARG00000020278 3120 1.535 - 0.733 - - 0.802 - - - - si:dkeyp-120h9.1 [Source:ZFIN;Acc:ZDB-GENE-070705-534]
72. pes ENSDARG00000018902 3286 1.528 - 0.748 - - - - - 0.780 - pescadillo [Source:ZFIN;Acc:ZDB-GENE-990415-206]
73. nuf2 ENSDARG00000034624 2252 1.526 - - - 0.700 0.826 - - - - NUF2, NDC80 kinetochore complex component, homolog [Source:ZFIN;Acc:ZDB-GENE-040426-1121]
74. srgap2a srgap2a 7197 1.525 - 0.737 - - - 0.788 - - -
75. tgif1 ENSDARG00000059337 4020 1.523 - 0.812 - - - - - - 0.711 TGFB-induced factor homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-030131-475]
76. gatad2ab ENSDARG00000006192 2461 1.52 - - - - 0.811 - - 0.709 - GATA zinc finger domain containing 2Ab [Source:ZFIN;Acc:ZDB-GENE-040426-2372]
77. atp2a2a ENSDARG00000029439 940 1.515 - 0.717 - - 0.798 - - - - ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2a [Source:ZFIN;Acc:ZDB-GENE-040426-702]
78. meis2b ENSDARG00000077840 5166 1.513 - 0.763 - - 0.750 - - - - Meis homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-000210-23]
79. g3bp1 ENSDARG00000017741 7622 1.509 - 0.798 - - - - - - 0.711 GTPase activating protein (SH3 domain) binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7452]
80. WDR77 2463 1.505 - 0.783 - - - - - 0.722 - WD repeat domain 77
81. tns1 tns1 5891 1.503 - 0.741 - - 0.762 - - - -
82. lepre1 lepre1 5346 1.495 - 0.768 - - - - - 0.727 -
83. dr1 ENSDARG00000105098, ENSDARG00000113528 5263 1.479 - - - - 0.770 - - - 0.709 down-regulator of transcription 1 [Source:ZFIN;Acc:ZDB-GENE-061013-797]
84. pgk1 ENSDARG00000054191 7652 1.475 - 0.714 - - - 0.761 - - - phosphoglycerate kinase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2711]
85. srsf3b ENSDARG00000059360 14888 1.466 - - - - 0.702 - - 0.764 - serine/arginine-rich splicing factor 3b [Source:ZFIN;Acc:ZDB-GENE-071005-2]
86. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 27188 1.457 - 0.708 - - - - 0.749 - - si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
87. cct8 ENSDARG00000008243 6843 1.454 - 0.753 - - - - - - 0.701 chaperonin containing TCP1, subunit 8 (theta) [Source:ZFIN;Acc:ZDB-GENE-040426-876]
88. snrnp200 ENSDARG00000077536, ENSDARG00000114486 4981 1.453 - 0.713 - - - - - 0.740 - small nuclear ribonucleoprotein 200 (U5) [Source:ZFIN;Acc:ZDB-GENE-081105-64]
89. cox8a ENSDARG00000095273 60672 1.452 0.751 - - - - 0.701 - - - cytochrome c oxidase subunit 8A [Source:ZFIN;Acc:ZDB-GENE-030131-9136]
90. fermt2 ENSDARG00000020242 9351 1.45 - - 0.741 - 0.709 - - - - fermitin family member 2 [Source:ZFIN;Acc:ZDB-GENE-050506-132]
91. si:dkey-238o14.5 si:dkey-238o14.5 450 1.443 - 0.720 - - - - - 0.723 -
92. si:ch211-161h7.4 ENSDARG00000087238 4399 1.434 - 0.722 - - - - - - 0.712 si:ch211-161h7.4 [Source:ZFIN;Acc:ZDB-GENE-091118-108]
93. fam120c ENSDARG00000019205 1365 1.425 - 0.711 - - - - - - 0.714 family with sequence similarity 120C [Source:ZFIN;Acc:ZDB-GENE-090313-228]
94. epha7 ENSDARG00000004635, ENSDARG00000112305 1373 1.403 - - - - - - - 0.702 0.701 eph receptor A7 [Source:ZFIN;Acc:ZDB-GENE-030131-3745]
95. efnb2a ENSDARG00000020164 5262 1.403 - 0.700 - - - - - - 0.703 ephrin-B2a [Source:ZFIN;Acc:ZDB-GENE-990415-67]
96. BOLA2B BOLA2B 2957 0.999 - - - - - - 0.999 - -
97. ACVR2B 6615 0.999 - - - - - - 0.999 - - activin A receptor, type IIB
98. slc38a4 ENSDARG00000018149 2344 0.999 - - - - - - 0.999 - - solute carrier family 38, member 4 [Source:ZFIN;Acc:ZDB-GENE-041010-14]
99. dtna ENSDARG00000031015 1746 0.999 - - - - - - 0.999 - - dystrobrevin, alpha [Source:ZFIN;Acc:ZDB-GENE-070117-2]
100. dap3 ENSDARG00000078500 2724 0.998 - - - - - - 0.998 - - death associated protein 3 [Source:ZFIN;Acc:ZDB-GENE-051129-2]

There are 1346 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA