Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for her4.3

Gene Name Gene ID Reads Annotation
her4.3 ENSDARG00000070770 613 hairy-related 4, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-081030-7]










Genes with expression patterns similar to her4.3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. her4.3 ENSDARG00000070770 613 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 hairy-related 4, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-081030-7]
2. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 4.061 0.770 - - - - 0.911 0.867 0.740 0.773 cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
3. zgc:109889 ENSDARG00000069600, ENSDARG00000113538 554 3.988 0.831 - - - - 0.758 0.783 0.876 0.740 zgc:109889 [Source:ZFIN;Acc:ZDB-GENE-050522-547]
4. tuba1c ENSDARG00000055216 8384 3.924 0.703 - - - - 0.781 0.927 0.706 0.807 tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
5. her4.1 ENSDARG00000056732 1264 3.887 - - 0.711 0.709 - 0.739 0.921 0.807 - hairy-related 4, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-980526-521]
6. ctnnd2b ENSDARG00000003779 964 3.574 0.706 - - - 0.991 0.941 0.936 - - catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
7. dpysl3 ENSDARG00000002587 4381 3.484 - - - - 0.951 0.866 0.909 - 0.758 dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
8. pou3f2b ENSDARG00000076262, ENSDARG00000112713 2439 3.482 - 0.722 - - - 0.962 0.953 0.845 - POU class 3 homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-980526-370]
9. dla ENSDARG00000010791 9281 3.466 0.841 - - - 0.930 - 0.949 - 0.746 deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
10. pou3f2a ENSDARG00000070220 817 3.446 - - - - - 0.890 0.860 0.877 0.819 POU class 3 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-139]
11. sox19b ENSDARG00000040266 532 3.436 0.718 - - 0.814 - 0.986 0.918 - - SRY (sex determining region Y)-box 19b [Source:ZFIN;Acc:ZDB-GENE-010111-1]
12. sox19a ENSDARG00000010770, ENSDARG00000110497 4683 3.429 0.844 - - - - 0.885 0.930 0.770 - SRY (sex determining region Y)-box 19a [Source:ZFIN;Acc:ZDB-GENE-980526-102]
13. tmem35 ENSDARG00000052567 5685 3.394 - - - - - 0.934 0.960 0.719 0.781 transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
14. lhx1b ENSDARG00000007944, ENSDARG00000111635 254 3.391 0.740 - - - - 0.975 0.941 0.735 - LIM homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-980526-116]
15. nova2 ENSDARG00000017673 7685 3.376 0.736 - - - 0.775 0.918 0.947 - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
16. C8H1orf106 C8H1orf106 2690 3.355 0.743 - - - - 0.961 0.934 - 0.717
17. PPP1R9B PPP1R9B 855 3.338 0.830 0.762 - - - 0.822 0.924 - -
18. mllt11 ENSDARG00000071026 2518 3.294 - - - - - 0.751 0.925 0.840 0.778 MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
19. bhlhe22 ENSDARG00000058039 1673 3.294 0.728 - - - - 0.890 0.901 0.775 - basic helix-loop-helix family, member e22 [Source:ZFIN;Acc:ZDB-GENE-040426-1411]
20. rab39b rab39b 449 3.253 0.721 0.874 - - - 0.828 0.830 - -
21. scrt2 ENSDARG00000056175 4331 3.228 0.746 - - - 0.954 0.746 0.782 - - scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
22. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 3.226 0.728 - - - - - 0.969 0.769 0.760 leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
23. PRKAR2B ENSDARG00000036446 812 3.202 0.731 - - - - 0.879 0.805 0.787 - protein kinase cAMP-dependent type II regulatory subunit beta [Source:HGNC Symbol;Acc:HGNC:9392]
24. hnrnpa3 ENSDARG00000059351 453 3.202 0.778 0.853 - - - 0.816 0.755 - - heterogeneous nuclear ribonucleoprotein A3 [Source:ZFIN;Acc:ZDB-GENE-060224-1]
25. marcksa ENSDARG00000004049 2518 3.201 - - - - - 0.778 0.842 0.814 0.767 myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
26. fzd3a ENSDARG00000021664 1958 3.192 0.877 - - - - 0.722 0.859 - 0.734 frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
27. hmgb1b ENSDARG00000030479 10398 3.182 - - - - 0.717 0.805 0.916 0.744 - high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]
28. pcdh19 ENSDARG00000034344 2378 3.178 - - - - - 0.893 0.736 0.809 0.740 protocadherin 19 [Source:ZFIN;Acc:ZDB-GENE-030131-4218]
29. PPP2R5B ENSDARG00000054931 213 3.177 - - - 0.805 - 0.773 0.825 0.774 - protein phosphatase 2, regulatory subunit B', beta [Source:ZFIN;Acc:ZDB-GENE-101208-1]
30. ZFHX3 ENSDARG00000103057 7759 3.16 0.708 - - - 0.810 0.756 0.886 - - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
31. csdc2a ENSDARG00000041323, ENSDARG00000115932 490 3.142 - - - - - 0.746 0.839 0.848 0.709 cold shock domain containing C2, RNA binding a [Source:ZFIN;Acc:ZDB-GENE-040718-442]
32. celf3a ENSDARG00000034668 2432 3.139 - - - - - 0.792 0.713 0.798 0.836 cugbp, Elav-like family member 3a [Source:ZFIN;Acc:ZDB-GENE-000501-2]
33. nkx6.2 ENSDARG00000104735 5081 3.128 0.771 - - - 0.704 0.729 0.924 - - NK6 homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-070626-1]
34. prdm12b ENSDARG00000007430 914 3.127 - 0.794 - - - 0.742 0.872 0.719 - PR domain containing 12b [Source:ZFIN;Acc:ZDB-GENE-041114-172]
35. myt1b ENSDARG00000102879 5411 3.126 0.708 0.747 - - - 0.795 0.876 - - myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
36. gria1a ENSDARG00000021352, ENSDARG00000111182, ENSDARG00000111756, ENSDARG00000112683 169 2.993 - - - 0.787 - 0.701 - 0.765 0.740 glutamate receptor, ionotropic, AMPA 1a [Source:ZFIN;Acc:ZDB-GENE-020125-1]
37. fam60al 2846 2.944 0.719 - - - - - 0.727 0.785 0.713 family with sequence similarity 60, member A, like
38. coe2 coe2 1633 2.936 - - - - - 0.702 0.751 0.728 0.755
39. elavl3 ENSDARG00000014420 8644 2.69 - - - - - 0.967 0.968 0.755 - ELAV like neuron-specific RNA binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-980526-76]
40. her4.2 ENSDARG00000056729, ENSDARG00000094426 289 2.688 - - - - - 0.969 0.906 0.813 - hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
41. CABZ01111990.1 CABZ01111990.1 4374 2.685 - - - - - 0.931 0.926 0.828 -
42. dync1i1 ENSDARG00000060948 554 2.682 - - - - - 0.956 0.984 - 0.742 dynein, cytoplasmic 1, intermediate chain 1 [Source:ZFIN;Acc:ZDB-GENE-061215-62]
43. celf4 ENSDARG00000070045 1537 2.677 - - - - - 0.881 0.977 0.819 - CUGBP, Elav-like family member 4 [Source:ZFIN;Acc:ZDB-GENE-040718-300]
44. slc8a2b ENSDARG00000100592 598 2.676 0.835 - - - - 0.928 0.913 - - solute carrier family 8 (sodium/calcium exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-050419-209]
45. glrbb ENSDARG00000052769, ENSDARG00000113828 467 2.662 0.790 - - - - 0.915 0.957 - - glycine receptor, beta b [Source:ZFIN;Acc:ZDB-GENE-040801-106]
46. msi1 ENSDARG00000010710 2634 2.655 0.873 - - - - 0.886 0.896 - - musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]
47. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 2.651 - - - - - 0.941 0.874 0.836 - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
48. neurog1 ENSDARG00000056130 3924 2.639 0.715 - - - - 0.968 0.956 - - neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]
49. gnao1a ENSDARG00000016676 8184 2.632 - - - - 0.992 - 0.915 - 0.725 guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O, a [Source:ZFIN;Acc:ZDB-GENE-040426-1757]
50. AGO1 ENSDARG00000092644 4521 2.623 0.781 - - - - 0.938 0.904 - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
51. EPB41L1 EPB41L1 1896 2.621 0.767 - - - - 0.975 0.879 - -
52. mir124-2 196 2.616 0.909 - - - - 0.794 0.913 - - microRNA 124-2
53. rheb ENSDARG00000090213 1432 2.614 0.744 - - - - 0.971 0.899 - - Ras homolog, mTORC1 binding [Source:ZFIN;Acc:ZDB-GENE-040426-1690]
54. nadl1.1 1200 2.613 0.768 - - - - 0.861 0.984 - - neural adhesion molecule L1.1, transcript variant X1
55. plcxd3 ENSDARG00000054794 112 2.613 0.861 - - - - 0.814 0.938 - - phosphatidylinositol-specific phospholipase C, X domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-050327-10]
56. pax6a ENSDARG00000103379 3061 2.608 - - - - - 0.900 0.835 0.873 - paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
57. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 2.598 0.777 - - - - 0.880 0.941 - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
58. slc18a3a ENSDARG00000006356 1285 2.59 0.744 - - - - 0.897 0.949 - - solute carrier family 18 (vesicular acetylcholine transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-060929-990]
59. clstn1 ENSDARG00000031720 5286 2.58 0.747 - - - - 0.916 0.917 - - calsyntenin 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1064]
60. si:ch73-21g5.7 ENSDARG00000093156 9412 2.576 0.835 - - - - - 0.949 0.792 - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
61. sprn ENSDARG00000056004 128 2.572 - - - - - 0.786 0.937 0.849 - shadow of prion protein [Source:ZFIN;Acc:ZDB-GENE-031110-1]
62. clvs2 ENSDARG00000053122 1390 2.569 0.741 - - - - - 0.973 0.855 - clavesin 2 [Source:ZFIN;Acc:ZDB-GENE-041014-313]
63. sv2bb ENSDARG00000060711 196 2.567 0.782 - - - - 0.865 0.920 - - synaptic vesicle glycoprotein 2Bb [Source:ZFIN;Acc:ZDB-GENE-030131-2789]
64. UBE2QL1 ENSDARG00000079276 3474 2.566 0.820 - - - - 0.908 0.838 - - ubiquitin-conjugating enzyme E2Q family-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8137]
65. elavl4 ENSDARG00000045639 998 2.561 - - - - - 0.884 0.927 - 0.750 ELAV like neuron-specific RNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-990415-246]
66. NPTXR NPTXR 241 2.561 - 0.760 - - - 0.867 0.934 - -
67. calca ENSDARG00000056590 150 2.552 0.712 - - - - 0.882 0.958 - - calcitonin/calcitonin-related polypeptide, alpha [Source:ZFIN;Acc:ZDB-GENE-040718-173]
68. pik3r3b ENSDARG00000034409, ENSDARG00000113215, ENSDARG00000117028 3213 2.55 - - - - 0.964 0.763 0.823 - - phosphoinositide-3-kinase, regulatory subunit 3b (gamma) [Source:ZFIN;Acc:ZDB-GENE-040426-743]
69. CABZ01028287.1 CABZ01028287.1 626 2.547 - - - - - 0.903 0.940 - 0.704
70. islr2 ENSDARG00000051875, ENSDARG00000109523 2288 2.545 0.767 - - - - 0.849 0.929 - - immunoglobulin superfamily containing leucine-rich repeat 2 [Source:ZFIN;Acc:ZDB-GENE-050320-95]
71. vgf ENSDARG00000105529 247 2.542 0.768 - - - - 0.799 0.975 - - VGF nerve growth factor inducible [Source:ZFIN;Acc:ZDB-GENE-121009-2]
72. cspg5a ENSDARG00000069981 1699 2.54 - - 0.712 - - 0.889 0.939 - - chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
73. cadpsb ENSDARG00000070567 458 2.54 0.769 - - - - 0.831 0.940 - - Ca2+-dependent activator protein for secretion b [Source:ZFIN;Acc:ZDB-GENE-110621-2]
74. SLC5A7 SLC5A7 453 2.538 0.760 - - - - 0.845 0.933 - -
75. mnx2b ENSDARG00000030350 484 2.538 0.728 - - - - 0.902 0.908 - - motor neuron and pancreas homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-040415-2]
76. cntnap2b ENSDARG00000074558, ENSDARG00000109616, ENSDARG00000116850 559 2.534 - - - - - 0.770 0.908 0.856 - contactin associated protein like 2b [Source:NCBI gene;Acc:563345]
77. TUBB8P7_2 TUBB8P7_2 565 2.533 0.746 - - - - 0.902 0.885 - -
78. pcdh18a ENSDARG00000089805 1096 2.525 - - - - 0.997 0.713 0.815 - - protocadherin 18a [Source:ZFIN;Acc:ZDB-GENE-000607-1]
79. EFCC1 ENSDARG00000077826 1359 2.522 0.812 - - - - 0.815 0.895 - - EF-hand and coiled-coil domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-120813-3]
80. TMEM55B_1 TMEM55B_1 495 2.515 - - - - - 0.805 0.930 0.780 -
81. kif5c ENSDARG00000076027 424 2.514 - 0.704 - - - 0.872 0.938 - - kinesin family member 5C [Source:ZFIN;Acc:ZDB-GENE-081105-14]
82. nlgn2b ENSDARG00000079251, ENSDARG00000111576 179 2.512 - 0.796 - - - 0.750 0.966 - - neuroligin 2b [Source:ZFIN;Acc:ZDB-GENE-090918-3]
83. st18 663 2.506 - - - - - - 0.989 0.801 0.716 suppression of tumorigenicity 18, zinc finger
84. epha4b ENSDARG00000011600 3110 2.506 0.741 - - - - 0.851 0.914 - - eph receptor A4b [Source:ZFIN;Acc:ZDB-GENE-030826-6]
85. GADD45G_1 GADD45G_1 236 2.502 - - - - - 0.747 0.860 0.895 -
86. syngr3a ENSDARG00000014871 405 2.501 - - - - - 0.918 0.851 0.732 - synaptogyrin 3a [Source:ZFIN;Acc:ZDB-GENE-050522-541]
87. slc1a2b ENSDARG00000102453 3136 2.499 - - - - 0.900 0.742 0.857 - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
88. ckbb ENSDARG00000043257 3503 2.498 0.738 - - - - 0.861 0.899 - - creatine kinase, brain b [Source:ZFIN;Acc:ZDB-GENE-020103-2]
89. si:dkey-169l5.3 si:dkey-169l5.3 239 2.488 0.710 - - - - 0.858 0.920 - -
90. pou3f3a ENSDARG00000042032 2835 2.484 - - - - - 0.845 0.920 - 0.719 POU class 3 homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-980526-220]
91. gsx1 ENSDARG00000035735 1243 2.484 - - - - - 0.860 0.903 - 0.721 GS homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-041008-135]
92. gpr85 ENSDARG00000068701, ENSDARG00000116501 372 2.481 - - - - - 0.811 0.862 - 0.808 G protein-coupled receptor 85 [Source:ZFIN;Acc:ZDB-GENE-000710-2]
93. vim ENSDARG00000010008 3551 2.481 0.752 - - - - 0.840 0.889 - - vimentin [Source:ZFIN;Acc:ZDB-GENE-011212-3]
94. ptprnb ENSDARG00000077047 2743 2.478 0.708 - - - - 0.833 0.937 - - protein tyrosine phosphatase, receptor type, Nb [Source:ZFIN;Acc:ZDB-GENE-100505-1]
95. pax6b ENSDARG00000045936 349 2.475 - - - - - 0.862 0.871 - 0.742 paired box 6b [Source:ZFIN;Acc:ZDB-GENE-001031-1]
96. CLIP3 ENSDARG00000054456 734 2.475 0.748 - - - - - 0.914 0.813 - CAP-GLY domain containing linker protein 3 [Source:ZFIN;Acc:ZDB-GENE-131127-193]
97. gfap ENSDARG00000025301 5584 2.472 0.739 - - - - 0.797 0.936 - - glial fibrillary acidic protein [Source:ZFIN;Acc:ZDB-GENE-990914-3]
98. CHL1 CHL1 1553 2.467 0.782 - - - - 0.863 0.822 - -
99. si:ch211-10a23.2 ENSDARG00000060656 471 2.467 - - - - - 0.924 0.827 - 0.716 si:ch211-10a23.2 [Source:ZFIN;Acc:ZDB-GENE-090313-9]
100. pcdh1gc5 ENSDARG00000104826 10052 2.467 0.786 - - - - 0.711 0.970 - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]

There are 2553 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA