Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for her4.2_1

Gene Name Gene ID Reads Annotation
her4.2_1 ENSDARG00000056729, ENSDARG00000094426 2383 hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]










Genes with expression patterns similar to her4.2_1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. her4.2_1 ENSDARG00000056729, ENSDARG00000094426 2383 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
2. si:ch73-21g5.7 ENSDARG00000093156 9412 5.652 0.785 0.749 0.807 0.701 - 0.970 0.919 - 0.721 si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
3. fzd3a ENSDARG00000021664 1958 4.873 0.825 - 0.755 0.748 - - 0.837 0.863 0.845 frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
4. nadl1.1 1200 4.833 0.712 0.752 - - - 0.744 0.952 0.941 0.732 neural adhesion molecule L1.1, transcript variant X1
5. myt1b ENSDARG00000102879 5411 4.735 0.756 0.794 - 0.739 - 0.851 0.871 - 0.724 myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
6. BX957337.1 BX957337.1 1685 4.377 0.803 0.873 - - - 0.944 0.871 0.886 -
7. slc6a1b ENSDARG00000039647 1301 4.326 0.835 - - - - 0.987 0.951 0.844 0.709 solute carrier family 6 (neurotransmitter transporter), member 1b [Source:ZFIN;Acc:ZDB-GENE-041114-57]
8. cadm3 ENSDARG00000057013 1545 4.192 - 0.803 - - - 0.847 0.768 0.943 0.831 cell adhesion molecule 3 [Source:ZFIN;Acc:ZDB-GENE-060512-196]
9. lmo3 ENSDARG00000008720, ENSDARG00000114518 4773 4.119 0.722 - - - - 0.938 0.838 0.894 0.727 LIM domain only 3 [Source:ZFIN;Acc:ZDB-GENE-050522-201]
10. TUBA1A ENSDARG00000001889 25294 4.065 0.734 - - 0.792 - 0.827 0.945 0.767 - tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
11. nova2 ENSDARG00000017673 7685 3.976 0.733 0.718 - 0.873 - - 0.924 - 0.728 neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
12. gpm6aa ENSDARG00000055455, ENSDARG00000110942 9156 3.65 - 0.896 - - - - 0.952 0.939 0.863 glycoprotein M6Aa [Source:ZFIN;Acc:ZDB-GENE-030710-7]
13. st18 663 3.593 - 0.886 - - - 0.958 0.960 - 0.789 suppression of tumorigenicity 18, zinc finger
14. CLIP3 ENSDARG00000054456 734 3.538 - 0.906 - - - 0.977 0.937 - 0.718 CAP-GLY domain containing linker protein 3 [Source:ZFIN;Acc:ZDB-GENE-131127-193]
15. tnika ENSDARG00000056218 728 3.523 - - 0.774 - - 0.964 0.922 0.863 - TRAF2 and NCK interacting kinase a [Source:ZFIN;Acc:ZDB-GENE-030131-3767]
16. ROBO3_1 ROBO3_1 468 3.513 0.753 0.972 - - - 0.965 0.823 - -
17. sox19b ENSDARG00000040266 532 3.475 0.834 0.966 - - - - 0.864 0.811 - SRY (sex determining region Y)-box 19b [Source:ZFIN;Acc:ZDB-GENE-010111-1]
18. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 3.465 0.801 - - 0.844 - - 0.938 - 0.882 leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
19. pcdh1gc5 ENSDARG00000104826 10052 3.463 0.774 0.833 - - - 0.902 0.954 - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
20. stmn1b ENSDARG00000033655 9491 3.418 0.762 - - 0.778 - 0.978 0.900 - - stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
21. TMEM57 TMEM57 260 3.416 - 0.826 - - - 0.921 0.819 - 0.850
22. dla ENSDARG00000010791 9281 3.396 0.758 0.884 - - - - 0.921 - 0.833 deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
23. hmgb3a ENSDARG00000056725 15668 3.383 - - - - - 0.776 0.838 0.956 0.813 high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
24. plp1a ENSDARG00000103732 3544 3.382 0.716 - - 0.781 - 0.948 0.937 - - proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
25. celsr2 ENSDARG00000019726, ENSDARG00000094388 4002 3.379 0.743 - - - - 0.923 0.863 0.850 - cadherin, EGF LAG seven-pass G-type receptor 2 [Source:ZFIN;Acc:ZDB-GENE-070122-2]
26. bcl11ab ENSDARG00000063153 3032 3.367 - - - 0.734 - 0.906 - 0.841 0.886 B cell CLL/lymphoma 11Ab [Source:ZFIN;Acc:ZDB-GENE-061009-4]
27. nhlh2 ENSDARG00000025495 1860 3.353 - 0.930 - - - - 0.946 0.728 0.749 nescient helix loop helix 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1809]
28. her13 ENSDARG00000007097 2000 3.351 0.773 0.823 - - - - 0.979 - 0.776 hairy-related 13 [Source:ZFIN;Acc:ZDB-GENE-050228-1]
29. hnrnpub ENSDARG00000004735 16496 3.345 - - - 0.847 - 0.786 0.828 - 0.884 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
30. tuba1c ENSDARG00000055216 8384 3.331 0.713 - - - - 0.823 0.900 - 0.895 tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
31. hmp19 2554 3.33 0.708 - - - - 0.926 0.949 - 0.747 HMP19 protein
32. AP3B2 1874 3.304 - - - - - 0.856 0.747 0.902 0.799 adaptor related protein complex 3 beta 2 subunit, transcript variant X2
33. tox ENSDARG00000032317 9126 3.296 0.789 - - - - 0.747 0.862 - 0.898 thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]
34. Sep-03 Sep-03 1124 3.295 - - - - - 0.774 0.938 0.752 0.831
35. slc17a6b ENSDARG00000041150 823 3.289 0.791 - - - - 0.924 0.821 0.753 - solute carrier family 17 (vesicular glutamate transporter), member 6b [Source:ZFIN;Acc:ZDB-GENE-030616-554]
36. sypa ENSDARG00000042974, ENSDARG00000110528 3217 3.285 0.728 - - - - 0.918 0.869 0.770 - synaptophysin a [Source:ZFIN;Acc:ZDB-GENE-031104-2]
37. aplp1 ENSDARG00000098368 2317 3.272 - 0.707 - - - 0.955 - 0.785 0.825 amyloid beta (A4) precursor-like protein 1 [Source:ZFIN;Acc:ZDB-GENE-040319-1]
38. EML6 250 3.27 0.723 - - - - 0.892 0.905 - 0.750 echinoderm microtubule associated protein like 6
39. atp6v0cb ENSDARG00000036577 3472 3.233 0.742 - - - - 0.826 0.913 - 0.752 ATPase H+ transporting V0 subunit cb [Source:ZFIN;Acc:ZDB-GENE-030131-4127]
40. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 3.223 0.744 - - - - 0.866 0.861 - 0.752 methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
41. CABZ01028287.1 CABZ01028287.1 626 3.217 0.772 - - 0.742 - - 0.891 - 0.812
42. peli1b ENSDARG00000044083, ENSDARG00000112797 3801 3.213 - - - 0.842 - 0.817 0.729 - 0.825 pellino E3 ubiquitin protein ligase 1b [Source:ZFIN;Acc:ZDB-GENE-061027-372]
43. FAM171A2 FAM171A2 707 3.177 0.766 0.886 - - - - 0.811 - 0.714
44. dbx1a ENSDARG00000086393 3161 3.176 0.711 0.917 - - 0.828 - 0.720 - - developing brain homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-000128-8]
45. ttc9b ENSDARG00000068421 251 3.154 - 0.725 - - - 0.905 0.756 - 0.768 tetratricopeptide repeat domain 9B [Source:ZFIN;Acc:ZDB-GENE-050419-67]
46. C8H1orf106 C8H1orf106 2690 3.152 0.742 - 0.741 - - - 0.905 - 0.764
47. relnl relnl 863 3.149 - 0.835 - 0.708 - 0.799 0.807 - -
48. rtn1b ENSDARG00000021143 1682 3.147 0.730 - - - - 0.895 0.817 - 0.705 reticulon 1b [Source:ZFIN;Acc:ZDB-GENE-030710-3]
49. btg2 ENSDARG00000020298 6616 3.139 - - - 0.721 - 0.807 0.778 0.833 - B-cell translocation gene 2 [Source:ZFIN;Acc:ZDB-GENE-000210-15]
50. nbeaa ENSDARG00000070080 862 3.132 0.731 - - 0.706 - - 0.842 - 0.853 neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
51. lfng ENSDARG00000037879 11783 3.126 0.753 - - 0.844 - 0.708 - - 0.821 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:ZFIN;Acc:ZDB-GENE-980605-16]
52. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 3.122 0.736 - - 0.708 - - 0.821 - 0.857 cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
53. skp2 ENSDARG00000004937, ENSDARG00000114929 1584 3.088 - 0.712 - - - - 0.725 0.895 0.756 S-phase kinase-associated protein 2, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-030219-158]
54. gad2 ENSDARG00000015537 724 3.071 0.789 0.713 - - - 0.714 0.855 - - glutamate decarboxylase 2 [Source:ZFIN;Acc:ZDB-GENE-030909-9]
55. myt1a ENSDARG00000074030, ENSDARG00000116035 2839 3.065 - 0.761 - - - 0.714 0.835 - 0.755 myelin transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3885]
56. wu:fq41a10 wu:fq41a10 7009 3.029 - 0.726 - 0.727 - - 0.840 0.736 -
57. lppr3a lppr3a 1294 2.98 - - - 0.725 - 0.714 0.722 - 0.819
58. unc13c 197 2.963 0.713 0.702 - - - 0.738 0.810 - - unc-13 homolog C (C. elegans)
59. her15.2 her15.2 1701 2.876 - 0.932 - - - 0.981 0.963 - -
60. scn1lab ENSDARG00000062744 155 2.771 - 0.884 - - - 0.949 0.938 - - sodium channel, voltage-gated, type I like, alpha b [Source:ZFIN;Acc:ZDB-GENE-060906-1]
61. st6gal1 ENSDARG00000044514 142 2.736 - 0.826 - - - 0.963 0.947 - - ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 [Source:ZFIN;Acc:ZDB-GENE-060322-3]
62. tubb5 ENSDARG00000037997 18691 2.735 - - - 0.909 - - 0.882 0.944 - tubulin, beta 5 [Source:ZFIN;Acc:ZDB-GENE-031110-4]
63. sox2 ENSDARG00000070913 2763 2.727 - 0.826 - - - 0.966 0.935 - - SRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
64. bsk146 ENSDARG00000099069 274 2.708 - - - - - 0.961 0.881 0.866 - brain specific kinase 146 [Source:ZFIN;Acc:ZDB-GENE-060313-3]
65. atp1b4 ENSDARG00000053262 1337 2.704 - 0.833 - - - 0.952 0.919 - - ATPase Na+/K+ transporting subunit beta 4 [Source:ZFIN;Acc:ZDB-GENE-070412-1]
66. cnrip1a ENSDARG00000091683 1491 2.703 0.832 - - - - 0.974 0.897 - - cannabinoid receptor interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-126]
67. TTYH1 ENSDARG00000076804 399 2.68 - - - - - 0.979 0.830 - 0.871 tweety family member 1 [Source:ZFIN;Acc:ZDB-GENE-100922-257]
68. pcsk1nl ENSDARG00000076170 1232 2.663 0.764 - - - - 0.955 0.944 - - proprotein convertase subtilisin/kexin type 1 inhibitor, like [Source:ZFIN;Acc:ZDB-GENE-090427-2]
69. rfx4 ENSDARG00000026395, ENSDARG00000116861 2047 2.661 - 0.928 - - - 0.869 0.864 - - regulatory factor X, 4 [Source:ZFIN;Acc:ZDB-GENE-040909-2]
70. syn2a ENSDARG00000045945 434 2.661 0.770 - - - - 0.969 0.922 - - synapsin IIa [Source:ZFIN;Acc:ZDB-GENE-040718-341]
71. LINGO2 LINGO2 300 2.647 - 0.863 - - - 0.970 0.814 - -
72. elavl4 ENSDARG00000045639 998 2.639 - 0.910 - - - - 0.909 - 0.820 ELAV like neuron-specific RNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-990415-246]
73. stxbp1a ENSDARG00000001994 5154 2.638 - 0.799 - - - 0.911 0.928 - - syntaxin binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050626-106]
74. gad1b ENSDARG00000027419 440 2.627 0.846 0.826 - - - - 0.955 - - glutamate decarboxylase 1b [Source:ZFIN;Acc:ZDB-GENE-030909-3]
75. nxph1 ENSDARG00000033447 182 2.626 0.781 - - - - 0.983 0.862 - - neurexophilin 1 [Source:ZFIN;Acc:ZDB-GENE-040718-231]
76. MANEAL ENSDARG00000056450 262 2.626 - - - - - 0.881 0.863 0.882 - mannosidase endo-alpha like [Source:HGNC Symbol;Acc:HGNC:26452]
77. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 2.622 - - 0.840 0.871 - - - - 0.911 POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
78. syt11a ENSDARG00000057913 1145 2.622 0.730 - - - - 0.938 0.954 - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
79. CU928222.1 ENSDARG00000097436 1662 2.621 0.749 0.921 - - - - 0.951 - -
80. SLC5A7 SLC5A7 453 2.619 0.857 0.853 - - - - 0.909 - -
81. mdkb ENSDARG00000020708 5393 2.618 - - 0.856 - - 0.955 0.807 - - midkine b [Source:ZFIN;Acc:ZDB-GENE-010131-6]
82. atp2b3b ENSDARG00000023445 1424 2.616 - 0.733 - - - 0.928 0.955 - - ATPase plasma membrane Ca2+ transporting 3b [Source:ZFIN;Acc:ZDB-GENE-080409-2]
83. lhx5 ENSDARG00000057936 785 2.616 - 0.826 - - - 0.917 0.873 - - LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]
84. zic1 ENSDARG00000015567 2520 2.613 - - 0.805 - - 0.941 0.867 - - zic family member 1 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-000208-4]
85. mir10d-1 mir10d-1 860 2.61 - 0.862 - - - 0.896 0.852 - -
86. gpr144 gpr144 479 2.605 0.765 - - - - 0.889 0.951 - -
87. rims2b ENSDARG00000102690 275 2.604 - 0.941 - - - 0.799 0.864 - - regulating synaptic membrane exocytosis 2b [Source:ZFIN;Acc:ZDB-GENE-060503-893]
88. mapk12b ENSDARG00000006409 2246 2.603 - 0.733 - - - 0.975 0.895 - - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
89. tuba2 ENSDARG00000045014 1490 2.599 - - - - - 0.969 0.800 - 0.830 tubulin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1970]
90. dpysl5a ENSDARG00000011141 1827 2.598 - - - - - 0.884 0.842 - 0.872 dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
91. rap2ip rap2ip 681 2.596 - - - - - 0.856 0.939 - 0.801
92. ek1 ENSDARG00000020080 742 2.595 0.819 - - - - 0.957 0.819 - - eph-like kinase 1 [Source:ZFIN;Acc:ZDB-GENE-990415-58]
93. dpysl4 ENSDARG00000103490 534 2.589 - - - - - 0.928 0.883 - 0.778 dihydropyrimidinase-like 4 [Source:ZFIN;Acc:ZDB-GENE-050720-3]
94. kcnn1a ENSDARG00000091306 95 2.586 0.715 - - - - 0.939 0.932 - - potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1a [Source:ZFIN;Acc:ZDB-GENE-070912-703]
95. gap43 ENSDARG00000099744 4114 2.58 - - - - - 0.852 0.872 - 0.856 growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
96. nrxn3b ENSDARG00000062693 192 2.578 0.843 - - - - 0.796 0.939 - - neurexin 3b [Source:ZFIN;Acc:ZDB-GENE-070206-10]
97. CU856359.2 CU856359.2 182 2.573 0.715 - - - - 0.969 0.889 - -
98. napg napg 645 2.569 - - - - - 0.841 0.817 0.911 -
99. fez1 ENSDARG00000023174 701 2.564 - 0.826 - - - 0.882 - - 0.856 fasciculation and elongation protein zeta 1 (zygin I) [Source:ZFIN;Acc:ZDB-GENE-040426-2723]
100. ascl1a ENSDARG00000038386 1290 2.564 - 0.847 - - - - 0.914 - 0.803 achaete-scute family bHLH transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-980526-90]

There are 3125 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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