Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for her4.2

Gene Name Gene ID Reads Annotation
her4.2 ENSDARG00000056729, ENSDARG00000094426 289 hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]










Genes with expression patterns similar to her4.2

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. her4.2 ENSDARG00000056729, ENSDARG00000094426 289 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
2. gabrg2 ENSDARG00000053665 434 3.226 0.808 - - - - 0.913 0.722 0.783 - gamma-aminobutyric acid (GABA) A receptor, gamma 2 [Source:ZFIN;Acc:ZDB-GENE-091118-65]
3. cntn4 ENSDARG00000098161, ENSDARG00000109387 437 3.216 0.789 - - - 0.852 0.761 0.814 - - contactin 4 [Source:ZFIN;Acc:ZDB-GENE-060929-776]
4. GJD2_1 GJD2_1 3045 3.161 0.700 0.704 - - - 0.895 0.862 - -
5. pcdh2ac ENSDARG00000099783 325 3.112 - 0.739 - - - 0.887 0.783 0.703 - protocadherin 2 alpha c [Source:ZFIN;Acc:ZDB-GENE-041118-12]
6. bhlhe22 ENSDARG00000058039 1673 3.043 0.704 - - - - 0.838 0.787 0.714 - basic helix-loop-helix family, member e22 [Source:ZFIN;Acc:ZDB-GENE-040426-1411]
7. scn8aa ENSDARG00000005775 792 2.986 0.768 0.713 - - - 0.721 0.784 - - sodium channel, voltage gated, type VIII, alpha subunit a [Source:ZFIN;Acc:ZDB-GENE-000828-1]
8. slc17a6a ENSDARG00000001127 337 2.905 - 0.704 - - 0.756 - 0.708 0.737 - solute carrier family 17 (vesicular glutamate transporter), member 6a [Source:ZFIN;Acc:ZDB-GENE-050105-4]
9. rheb ENSDARG00000090213 1432 2.757 0.857 - - - - 0.939 0.961 - - Ras homolog, mTORC1 binding [Source:ZFIN;Acc:ZDB-GENE-040426-1690]
10. pou3f2b ENSDARG00000076262, ENSDARG00000112713 2439 2.708 - - - - - 0.944 0.947 0.817 - POU class 3 homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-980526-370]
11. si:dkey-169l5.3 si:dkey-169l5.3 239 2.707 - - - - 0.840 0.945 0.922 - -
12. her4.3 ENSDARG00000070770 613 2.688 - - - - - 0.969 0.906 0.813 - hairy-related 4, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-081030-7]
13. syngr3a ENSDARG00000014871 405 2.687 - 0.947 - - - 0.861 0.879 - - synaptogyrin 3a [Source:ZFIN;Acc:ZDB-GENE-050522-541]
14. lgi2b ENSDARG00000069701, ENSDARG00000116343 66 2.606 0.721 - - - - 0.907 0.978 - - leucine-rich repeat LGI family, member 2b [Source:ZFIN;Acc:ZDB-GENE-060217-3]
15. nrsn1 ENSDARG00000111235 123 2.597 - 0.850 - - - - 0.955 0.792 - neurensin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7491]
16. glrbb ENSDARG00000052769, ENSDARG00000113828 467 2.575 0.839 - - - - 0.841 0.895 - - glycine receptor, beta b [Source:ZFIN;Acc:ZDB-GENE-040801-106]
17. sox19b ENSDARG00000040266 532 2.572 0.747 - - - - 0.948 0.877 - - SRY (sex determining region Y)-box 19b [Source:ZFIN;Acc:ZDB-GENE-010111-1]
18. her8.2 ENSDARG00000069675 315 2.55 0.766 - - - - 0.869 0.915 - - hairy-related 8.2 [Source:ZFIN;Acc:ZDB-GENE-060815-4]
19. slc18a3a ENSDARG00000006356 1285 2.534 0.740 - - - - 0.891 0.903 - - solute carrier family 18 (vesicular acetylcholine transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-060929-990]
20. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 2.532 - - - - - 0.894 0.804 0.834 - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
21. myt1b ENSDARG00000102879 5411 2.526 0.864 - - - - 0.781 0.881 - - myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
22. neurod neurod 1189 2.526 - 0.853 - - - 0.827 0.846 - -
23. GPRIN3 GPRIN3 169 2.518 0.860 - - - 0.878 0.780 - - -
24. islr2 ENSDARG00000051875, ENSDARG00000109523 2288 2.504 - 0.704 - - - 0.915 0.885 - - immunoglobulin superfamily containing leucine-rich repeat 2 [Source:ZFIN;Acc:ZDB-GENE-050320-95]
25. lgi1a ENSDARG00000020493 1218 2.49 - 0.724 - - - 0.820 0.946 - - leucine-rich, glioma inactivated 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1731]
26. syt11a ENSDARG00000057913 1145 2.489 0.774 0.796 - - - - 0.919 - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
27. celf4 ENSDARG00000070045 1537 2.477 - - - - - 0.767 0.878 0.832 - CUGBP, Elav-like family member 4 [Source:ZFIN;Acc:ZDB-GENE-040718-300]
28. APBB3 ENSDARG00000053771 654 2.474 0.728 - - - - 0.896 0.850 - - amyloid beta (A4) precursor protein-binding, family B, member 3 [Source:ZFIN;Acc:ZDB-GENE-140106-53]
29. evlb ENSDARG00000099720 245 2.472 - - - - 0.797 0.831 0.844 - - Enah/Vasp-like b [Source:ZFIN;Acc:ZDB-GENE-040426-1804]
30. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 2.467 0.721 - - - - 0.873 0.873 - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
31. sst1.1 ENSDARG00000040799 677 2.466 - 0.769 - - - 0.816 0.881 - - somatostatin 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4743]
32. TMEM55B_1 TMEM55B_1 495 2.465 - - - - - 0.798 0.867 0.800 -
33. CABZ01111990.1 CABZ01111990.1 4374 2.463 - - - - - 0.889 0.843 0.731 -
34. CR407704.1 CR407704.1 188 2.454 0.834 - - - - 0.835 0.785 - -
35. nadl1.1 1200 2.45 0.774 - - - - 0.795 0.881 - - neural adhesion molecule L1.1, transcript variant X1
36. hnrnpa3 ENSDARG00000059351 453 2.45 - - - 0.775 - 0.879 0.796 - - heterogeneous nuclear ribonucleoprotein A3 [Source:ZFIN;Acc:ZDB-GENE-060224-1]
37. map7d2a ENSDARG00000068480 513 2.445 0.771 - - - - 0.862 0.812 - - MAP7 domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-060526-150]
38. PRKAR2B ENSDARG00000036446 812 2.442 - - - - - 0.825 0.800 0.817 - protein kinase cAMP-dependent type II regulatory subunit beta [Source:HGNC Symbol;Acc:HGNC:9392]
39. fyna ENSDARG00000011370 1679 2.436 0.702 - - - - 0.866 0.868 - - FYN proto-oncogene, Src family tyrosine kinase a [Source:ZFIN;Acc:ZDB-GENE-030903-5]
40. jagn1a ENSDARG00000041071, ENSDARG00000109427 397 2.432 0.749 0.793 - - - - 0.890 - - jagunal homolog 1a [Source:ZFIN;Acc:ZDB-GENE-041010-80]
41. rusc1 ENSDARG00000078125 617 2.432 0.825 - - - - 0.719 0.888 - - RUN and SH3 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-100922-274]
42. clstn1 ENSDARG00000031720 5286 2.43 0.700 - - - - 0.876 0.854 - - calsyntenin 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1064]
43. lhfpl4a ENSDARG00000111810 206 2.428 - - - - - 0.933 0.733 0.762 - lipoma HMGIC fusion partner-like 4a [Source:ZFIN;Acc:ZDB-GENE-111017-1]
44. CHL1 CHL1 1553 2.419 - 0.718 - - - 0.842 0.859 - -
45. SNORA74 SNORA74 284 2.418 - - - - 0.934 0.777 - 0.707 -
46. pcdh19 ENSDARG00000034344 2378 2.408 - - - - - 0.891 0.787 0.730 - protocadherin 19 [Source:ZFIN;Acc:ZDB-GENE-030131-4218]
47. zgc:194665 ENSDARG00000004577 136 2.403 0.848 - - - - 0.757 0.798 - - zgc:194665 [Source:ZFIN;Acc:ZDB-GENE-080722-38]
48. stx1b ENSDARG00000000503 2724 2.397 0.790 - - - - 0.794 0.813 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
49. scn2b ENSDARG00000101713 796 2.395 0.791 - - - - 0.747 0.857 - - sodium channel, voltage-gated, type II, beta [Source:ZFIN;Acc:ZDB-GENE-070920-1]
50. rbfox3 rbfox3 1443 2.391 - 0.830 - - - 0.754 0.807 - -
51. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 2.391 0.753 - - - - 0.831 0.807 - - cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
52. CLIP3 ENSDARG00000054456 734 2.389 0.795 - - - - - 0.838 0.756 - CAP-GLY domain containing linker protein 3 [Source:ZFIN;Acc:ZDB-GENE-131127-193]
53. st8sia5 ENSDARG00000036584 529 2.387 - - - - 0.747 - 0.852 0.788 - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 [Source:ZFIN;Acc:ZDB-GENE-060322-8]
54. pkd2l1 ENSDARG00000022503 372 2.382 - 0.700 - - - 0.782 0.900 - - polycystic kidney disease 2-like 1 [Source:ZFIN;Acc:ZDB-GENE-030616-558]
55. EFCC1 ENSDARG00000077826 1359 2.381 0.748 - - - - 0.824 0.809 - - EF-hand and coiled-coil domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-120813-3]
56. ksr2 ENSDARG00000094526 134 2.377 0.709 0.838 - - - - 0.830 - - kinase suppressor of ras 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8047]
57. elavl4 ENSDARG00000045639 998 2.374 0.732 - - - - 0.841 0.801 - - ELAV like neuron-specific RNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-990415-246]
58. pax6a ENSDARG00000103379 3061 2.374 - - - - - 0.822 0.759 0.793 - paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
59. cdk5r1b ENSDARG00000045087 2075 2.369 0.707 - - - 0.791 0.871 - - - cyclin-dependent kinase 5, regulatory subunit 1b (p35) [Source:ZFIN;Acc:ZDB-GENE-040718-220]
60. epha4b ENSDARG00000011600 3110 2.368 0.705 - - - - 0.799 0.864 - - eph receptor A4b [Source:ZFIN;Acc:ZDB-GENE-030826-6]
61. CR538726.1 ENSDARG00000097179 321 2.366 0.732 - - - - 0.792 0.842 - -
62. vgf ENSDARG00000105529 247 2.363 0.701 - - - - 0.748 0.914 - - VGF nerve growth factor inducible [Source:ZFIN;Acc:ZDB-GENE-121009-2]
63. dpysl4 ENSDARG00000103490 534 2.36 0.757 - - - - - 0.856 0.747 - dihydropyrimidinase-like 4 [Source:ZFIN;Acc:ZDB-GENE-050720-3]
64. isl1 ENSDARG00000004023 981 2.353 0.744 - - - - 0.702 0.907 - - ISL LIM homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-112]
65. dnm1b ENSDARG00000009281 219 2.349 0.799 - - - - 0.718 0.832 - - dynamin 1b [Source:ZFIN;Acc:ZDB-GENE-100920-3]
66. cacng3b ENSDARG00000076401 91 2.342 - 0.704 - - - 0.734 0.904 - - calcium channel, voltage-dependent, gamma subunit 3b [Source:ZFIN;Acc:ZDB-GENE-090828-1]
67. ckbb ENSDARG00000043257 3503 2.335 0.719 - - - - 0.799 0.817 - - creatine kinase, brain b [Source:ZFIN;Acc:ZDB-GENE-020103-2]
68. slc1a2b ENSDARG00000102453 3136 2.332 0.758 0.765 - - - - 0.809 - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
69. sypb ENSDARG00000002230 262 2.329 0.724 - - - - 0.782 0.823 - - synaptophysin b [Source:ZFIN;Acc:ZDB-GENE-040718-205]
70. nxph1 ENSDARG00000033447 182 2.327 0.728 0.885 - - - - 0.714 - - neurexophilin 1 [Source:ZFIN;Acc:ZDB-GENE-040718-231]
71. neflb ENSDARG00000012426 298 2.325 - 0.704 - - - 0.754 0.867 - - neurofilament, light polypeptide b [Source:ZFIN;Acc:ZDB-GENE-060312-44]
72. BSN BSN 463 2.319 0.832 - - - - 0.775 - 0.712 -
73. NEFH NEFH 101 2.318 0.799 - - - - 0.705 0.814 - -
74. calb1 ENSDARG00000031598 252 2.317 0.730 0.704 - - - - 0.883 - - calbindin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8107]
75. s1pr1 ENSDARG00000042690, ENSDARG00000113842, ENSDARG00000116038 2510 2.314 0.702 - - - - 0.775 0.837 - - sphingosine-1-phosphate receptor 1 [Source:ZFIN;Acc:ZDB-GENE-001228-2]
76. fstl5 ENSDARG00000040198 213 2.313 - - - - 0.754 0.854 0.705 - - follistatin-like 5 [Source:ZFIN;Acc:ZDB-GENE-070127-1]
77. fam219ab ENSDARG00000013813 591 2.311 - 0.704 - - - 0.762 0.845 - - family with sequence similarity 219, member Ab [Source:ZFIN;Acc:ZDB-GENE-050522-213]
78. TUBB8P7_2 TUBB8P7_2 565 2.302 0.767 - - - - 0.830 0.705 - -
79. TUBB8P7 TUBB8P7 1353 2.301 0.784 0.712 - - - 0.805 - - -
80. CBFA2T3 ENSDARG00000079012 6799 2.294 - - - 0.714 - 0.810 0.770 - - core-binding factor, runt domain, alpha subunit 2; translocated to, 3 [Source:ZFIN;Acc:ZDB-GENE-070209-2]
81. atp6v0a2a ENSDARG00000035538 278 2.293 - - - - 0.780 - 0.792 0.721 - ATPase H+ transporting V0 subunit a2a [Source:ZFIN;Acc:ZDB-GENE-091113-4]
82. ntrk2a ENSDARG00000059897 185 2.286 0.729 - - - - 0.722 0.835 - - neurotrophic tyrosine kinase, receptor, type 2a [Source:ZFIN;Acc:ZDB-GENE-010126-1]
83. slc17a6b ENSDARG00000041150 823 2.279 - 0.704 - - 0.757 - 0.818 - - solute carrier family 17 (vesicular glutamate transporter), member 6b [Source:ZFIN;Acc:ZDB-GENE-030616-554]
84. otpb ENSDARG00000058379 1143 2.266 0.742 0.704 - - - 0.820 - - - orthopedia homeobox b [Source:ZFIN;Acc:ZDB-GENE-990708-7]
85. gria4b ENSDARG00000059368, ENSDARG00000114212, ENSDARG00000115594 255 2.265 - 0.704 - - 0.854 0.707 - - - glutamate receptor, ionotropic, AMPA 4b [Source:ZFIN;Acc:ZDB-GENE-030131-8013]
86. fzd9b ENSDARG00000014673, ENSDARG00000116739 155 2.264 0.750 - - 0.757 - - 0.757 - - frizzled class receptor 9b [Source:ZFIN;Acc:ZDB-GENE-000906-4]
87. si:ch211-138k19.2 si:ch211-138k19.2 398 2.257 - 0.704 - - 0.720 - 0.833 - -
88. rab39b rab39b 449 2.244 0.808 - - - - 0.721 0.715 - -
89. jph3 ENSDARG00000102204 175 2.229 - 0.704 - - - 0.772 0.753 - - junctophilin 3 [Source:ZFIN;Acc:ZDB-GENE-060503-415]
90. prdm12b ENSDARG00000007430 914 2.229 - - - - - 0.761 0.766 0.702 - PR domain containing 12b [Source:ZFIN;Acc:ZDB-GENE-041114-172]
91. SV2A ENSDARG00000059945 1278 2.209 0.718 - - - - - 0.784 0.707 - synaptic vesicle glycoprotein 2A [Source:ZFIN;Acc:ZDB-GENE-131001-1]
92. CABZ01030107.1 ENSDARG00000058631 52 2.202 - 0.704 - - - 0.719 0.779 - -
93. espn ENSDARG00000076414 343 2.199 - 0.742 - - - 0.749 0.708 - - espin [Source:ZFIN;Acc:ZDB-GENE-081105-173]
94. TUBB2A TUBB2A 142 2.191 0.723 0.704 - - - - 0.764 - -
95. FRMPD1 34 2.185 0.764 0.704 - - - 0.717 - - - FERM and PDZ domain containing 1, transcript variant X3
96. scg5 ENSDARG00000032126, ENSDARG00000077045 29 2.137 0.700 0.704 - - - - 0.733 - - secretogranin V [Source:ZFIN;Acc:ZDB-GENE-040426-1687]
97. BX511121.1 ENSDARG00000029997 1774 1.931 - - - - - 0.991 0.940 - -
98. mnx2b ENSDARG00000030350 484 1.928 - - - - - 0.955 0.973 - - motor neuron and pancreas homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-040415-2]
99. C8H1orf106 C8H1orf106 2690 1.889 - - - - - 0.934 0.955 - -
100. neurog1 ENSDARG00000056130 3924 1.877 - - - - - 0.962 0.915 - - neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]

There are 1880 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA