Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for her4.1

Gene Name Gene ID Reads Annotation
her4.1 ENSDARG00000056732 1264 hairy-related 4, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-980526-521]










Genes with expression patterns similar to her4.1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. her4.1 ENSDARG00000056732 1264 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 hairy-related 4, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-980526-521]
2. si:ch73-21g5.7 ENSDARG00000093156 9412 5.565 0.745 0.745 0.787 - - 0.835 0.928 0.817 0.708 si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
3. tuba1c ENSDARG00000055216 8384 4.968 0.795 - - - 0.793 0.974 0.878 0.725 0.803 tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
4. mex3b ENSDARG00000058369 1867 4.653 - - 0.709 - 0.766 0.716 0.847 0.761 0.854 mex-3 RNA binding family member B [Source:ZFIN;Acc:ZDB-GENE-030131-2628]
5. nbeaa ENSDARG00000070080 862 4.083 0.760 - - - 0.799 0.893 0.850 0.781 - neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
6. CABZ01111990.1 CABZ01111990.1 4374 4.065 0.711 - - - - 0.810 0.881 0.784 0.879
7. pou3f2b ENSDARG00000076262, ENSDARG00000112713 2439 4.057 - - - - 0.814 0.811 0.921 0.709 0.802 POU class 3 homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-980526-370]
8. her4.3 ENSDARG00000070770 613 3.887 - - 0.711 0.709 - 0.739 0.921 0.807 - hairy-related 4, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-081030-7]
9. ccdc28b ENSDARG00000011222 528 3.837 0.834 - - 0.765 - 0.702 0.742 0.794 - coiled-coil domain containing 28B [Source:ZFIN;Acc:ZDB-GENE-060208-3]
10. nrarpb ENSDARG00000018958 6225 3.58 0.902 - - 0.810 - 0.942 0.926 - - NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
11. nova2 ENSDARG00000017673 7685 3.57 0.831 - - - - 0.916 0.934 - 0.889 neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
12. myt1b ENSDARG00000102879 5411 3.519 - 0.824 - - - 0.921 0.877 - 0.897 myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
13. ADAM22 ENSDARG00000060532 2259 3.502 - - - - - 0.853 0.936 0.854 0.859 ADAM metallopeptidase domain 22 [Source:ZFIN;Acc:ZDB-GENE-070810-1]
14. hmp19 2554 3.496 0.931 - - - 0.701 0.924 0.940 - - HMP19 protein
15. plp1a ENSDARG00000103732 3544 3.466 0.809 - - - - 0.845 0.937 - 0.875 proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
16. nes ENSDARG00000088805 2710 3.462 0.884 - - - 0.794 0.840 0.944 - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
17. lhx5 ENSDARG00000057936 785 3.412 - - - - - 0.935 0.847 0.847 0.783 LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]
18. gpm6aa ENSDARG00000055455, ENSDARG00000110942 9156 3.394 0.876 - - - 0.748 - 0.930 - 0.840 glycoprotein M6Aa [Source:ZFIN;Acc:ZDB-GENE-030710-7]
19. st8sia2 ENSDARG00000018788 2183 3.389 0.746 - - - - 0.895 0.915 - 0.833 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-020919-4]
20. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 3.388 0.898 - - - - 0.889 0.852 0.749 - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
21. irx1b ENSDARG00000056594 2224 3.37 0.821 - - - - 0.820 0.909 - 0.820 iroquois homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-010716-1]
22. mdkb ENSDARG00000020708 5393 3.363 - - 0.785 - - 0.891 0.848 - 0.839 midkine b [Source:ZFIN;Acc:ZDB-GENE-010131-6]
23. msi1 ENSDARG00000010710 2634 3.355 - - 0.729 - - 0.885 0.855 - 0.886 musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]
24. dpysl2b ENSDARG00000032083, ENSDARG00000109782 3487 3.349 0.748 - - - - 0.909 0.882 - 0.810 dihydropyrimidinase-like 2b [Source:ZFIN;Acc:ZDB-GENE-031105-1]
25. cspg5a ENSDARG00000069981 1699 3.349 - - 0.749 - - 0.808 0.892 - 0.900 chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
26. npas3b npas3b 1446 3.315 - - 0.714 - - 0.840 0.939 - 0.822
27. ptprna ENSDARG00000058646 1327 3.301 - - 0.714 - 0.812 0.834 0.941 - - protein tyrosine phosphatase, receptor type, Na [Source:ZFIN;Acc:ZDB-GENE-030131-3511]
28. dpysl5a ENSDARG00000011141 1827 3.299 0.710 - 0.765 - - 0.953 0.871 - - dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
29. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 3.279 0.715 - - - - 0.936 0.775 - 0.853 methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
30. negr1 ENSDARG00000021607 1051 3.279 0.745 0.842 - - - 0.872 0.820 - - neuronal growth regulator 1 [Source:ZFIN;Acc:ZDB-GENE-040822-27]
31. hmgb3a ENSDARG00000056725 15668 3.274 - - - - 0.740 0.886 0.863 - 0.785 high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
32. scrt1a ENSDARG00000100821 2687 3.25 0.737 - - - 0.755 0.955 - 0.803 - scratch family zinc finger 1a [Source:ZFIN;Acc:ZDB-GENE-080219-30]
33. ctnnd2b ENSDARG00000003779 964 3.239 0.801 - 0.774 - - 0.733 0.931 - - catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
34. her15.2 her15.2 1701 3.208 - - 0.706 - - 0.751 0.927 - 0.824
35. ZFHX3 ENSDARG00000103057 7759 3.206 - - 0.717 - - 0.904 0.849 0.736 - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
36. zgc:100906 ENSDARG00000033599 344 3.193 0.829 - - - - 0.713 0.897 0.754 - zgc:100906 [Source:ZFIN;Acc:ZDB-GENE-040801-20]
37. neurog1 ENSDARG00000056130 3924 3.189 0.726 - - - - 0.792 0.936 - 0.735 neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]
38. gad2 ENSDARG00000015537 724 3.177 - - - - - 0.811 0.812 0.721 0.833 glutamate decarboxylase 2 [Source:ZFIN;Acc:ZDB-GENE-030909-9]
39. zic1 ENSDARG00000015567 2520 3.176 - - 0.745 - 0.721 0.858 0.852 - - zic family member 1 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-000208-4]
40. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 3.173 - - 0.707 - - 0.906 0.851 0.709 - cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
41. fzd3a ENSDARG00000021664 1958 3.159 - - 0.732 - 0.730 0.833 0.864 - - frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
42. rcor2 ENSDARG00000008278 1678 3.122 - - - - 0.706 0.864 0.706 0.846 - REST corepressor 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1812]
43. arnt2 ENSDARG00000103697 5731 3.115 - - - - - 0.826 0.743 0.734 0.812 aryl-hydrocarbon receptor nuclear translocator 2 [Source:ZFIN;Acc:ZDB-GENE-001207-3]
44. scrt1b ENSDARG00000040214, ENSDARG00000110984 533 3.114 - - 0.748 - 0.792 0.857 0.717 - - scratch family zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-050327-72]
45. tuba2 ENSDARG00000045014 1490 3.096 - 0.753 - - - 0.825 0.803 0.715 - tubulin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1970]
46. rab39b rab39b 449 3.062 - - - - - 0.817 0.782 0.709 0.754
47. ptpro ENSDARG00000100422, ENSDARG00000110470 1850 3.061 0.731 - 0.740 - - 0.782 - - 0.808 protein tyrosine phosphatase, receptor type, O [Source:ZFIN;Acc:ZDB-GENE-070424-54]
48. dpysl5b ENSDARG00000059311 600 3.046 0.710 0.702 - - - 0.800 0.834 - - dihydropyrimidinase-like 5b [Source:ZFIN;Acc:ZDB-GENE-050720-4]
49. fam60al 2846 3.036 - - - 0.734 0.710 0.799 0.793 - - family with sequence similarity 60, member A, like
50. slbp ENSDARG00000100558 3405 3.005 0.716 - - 0.732 - - - 0.701 0.856 stem-loop binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-9686]
51. magi1a ENSDARG00000070145 547 2.942 - - 0.741 - 0.712 0.736 0.753 - - membrane associated guanylate kinase, WW and PDZ domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-081105-13]
52. nrn1a ENSDARG00000071860 1311 2.721 - - - - - 0.917 0.952 - 0.852 neuritin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-212]
53. stmn1b ENSDARG00000033655 9491 2.72 - - - - - 0.879 0.919 - 0.922 stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
54. AKT3 AKT3 1729 2.7 - - - - - 0.953 0.860 - 0.887
55. st18 663 2.688 - - - - - 0.891 0.921 0.876 - suppression of tumorigenicity 18, zinc finger
56. cntnap2b ENSDARG00000074558, ENSDARG00000109616, ENSDARG00000116850 559 2.685 - - - - - 0.906 0.906 0.873 - contactin associated protein like 2b [Source:NCBI gene;Acc:563345]
57. nhlh2 ENSDARG00000025495 1860 2.68 0.924 - - - - 0.814 0.942 - - nescient helix loop helix 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1809]
58. myt1a ENSDARG00000074030, ENSDARG00000116035 2839 2.669 - - - - - 0.878 0.892 - 0.899 myelin transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3885]
59. C7H4orf48 C7H4orf48 1455 2.666 - - - - - 0.921 0.899 0.846 -
60. gfap ENSDARG00000025301 5584 2.655 0.836 - - - - 0.920 0.899 - - glial fibrillary acidic protein [Source:ZFIN;Acc:ZDB-GENE-990914-3]
61. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 2.651 0.855 - - - - - 0.914 0.882 - leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
62. nell2b ENSDARG00000062797 854 2.635 0.872 - - - - 0.896 0.867 - - neural EGFL like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-8026]
63. vim ENSDARG00000010008 3551 2.633 0.821 - - - - 0.919 0.893 - - vimentin [Source:ZFIN;Acc:ZDB-GENE-011212-3]
64. lrrc4.1 ENSDARG00000069402 323 2.619 0.833 - - - - 0.942 0.844 - - leucine rich repeat containing 4.1 [Source:ZFIN;Acc:ZDB-GENE-041210-129]
65. insm1a ENSDARG00000091756 1838 2.614 - - - - - - 0.980 0.721 0.913 insulinoma-associated 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1810]
66. adcyap1b ENSDARG00000027740 1539 2.613 - - - - - 0.986 0.821 0.806 - adenylate cyclase activating polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-041010-89]
67. mllt11 ENSDARG00000071026 2518 2.609 - - - - - 0.961 0.872 0.776 - MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
68. tox ENSDARG00000032317 9126 2.603 0.820 - - - - 0.830 0.953 - - thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]
69. kcnc3a ENSDARG00000055855 1821 2.597 0.783 - - - - 0.971 0.843 - - potassium voltage-gated channel, Shaw-related subfamily, member 3a [Source:ZFIN;Acc:ZDB-GENE-100901-1]
70. rheb ENSDARG00000090213 1432 2.594 - - - - - 0.768 0.979 - 0.847 Ras homolog, mTORC1 binding [Source:ZFIN;Acc:ZDB-GENE-040426-1690]
71. slc32a1 ENSDARG00000059775 1092 2.589 0.726 - - - - 0.969 0.894 - - solute carrier family 32 (GABA vesicular transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-061201-1]
72. gap43 ENSDARG00000099744 4114 2.586 - - - - - 0.955 0.870 0.761 - growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
73. rap2ip rap2ip 681 2.58 - - - - - 0.904 0.936 0.740 -
74. rusc1 ENSDARG00000078125 617 2.579 - - - - - 0.956 0.896 - 0.727 RUN and SH3 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-100922-274]
75. dpysl3 ENSDARG00000002587 4381 2.577 - - - - - 0.942 0.860 - 0.775 dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
76. grin1a ENSDARG00000027828 1327 2.577 0.797 - - - - 0.911 0.869 - - glutamate receptor, ionotropic, N-methyl D-aspartate 1a [Source:ZFIN;Acc:ZDB-GENE-051202-1]
77. cnrip1a ENSDARG00000091683 1491 2.567 - - - - - 0.786 0.923 0.858 - cannabinoid receptor interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-126]
78. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 2.558 0.754 - - - - 0.895 0.909 - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
79. adam23a ENSDARG00000062323 580 2.557 - 0.709 - - - 0.923 0.925 - - ADAM metallopeptidase domain 23a [Source:ZFIN;Acc:ZDB-GENE-070810-2]
80. Sep-03 Sep-03 1124 2.551 0.731 - - - - 0.992 0.828 - -
81. gsx1 ENSDARG00000035735 1243 2.55 - - 0.724 - - 0.919 0.907 - - GS homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-041008-135]
82. nova1 ENSDARG00000020178 4129 2.547 - - - - 0.729 0.986 0.832 - - neuro-oncological ventral antigen 1 [Source:ZFIN;Acc:ZDB-GENE-060526-113]
83. SPOCK1 ENSDARG00000074644 794 2.546 - - - - 0.708 0.932 0.906 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:ZFIN;Acc:ZDB-GENE-110428-1]
84. sox21b ENSDARG00000008540 1460 2.545 0.789 - - - - - 0.916 0.840 - SRY (sex determining region Y)-box 21b [Source:ZFIN;Acc:ZDB-GENE-040429-1]
85. ctbp1 ENSDARG00000057007, ENSDARG00000115804 5795 2.54 - - - - - 0.943 0.741 - 0.856 C-terminal binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-010130-1]
86. CDK5R1 CDK5R1 562 2.534 0.741 - - - - 0.889 0.904 - -
87. mapk12b ENSDARG00000006409 2246 2.534 0.778 - - - - 0.832 0.924 - - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
88. AGO1 ENSDARG00000092644 4521 2.529 - - 0.782 - - 0.839 0.908 - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
89. csdc2a ENSDARG00000041323, ENSDARG00000115932 490 2.526 - - - - - 0.916 0.811 0.799 - cold shock domain containing C2, RNA binding a [Source:ZFIN;Acc:ZDB-GENE-040718-442]
90. pou3f2a ENSDARG00000070220 817 2.526 - - - - 0.816 - 0.883 0.827 - POU class 3 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-139]
91. sox2 ENSDARG00000070913 2763 2.524 0.818 - - 0.755 - - 0.951 - - SRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
92. CU928222.1 ENSDARG00000097436 1662 2.524 0.862 - - - - 0.761 0.901 - -
93. tox3 ENSDARG00000073957 3075 2.523 - - - - 0.841 - - 0.793 0.889 TOX high mobility group box family member 3 [Source:ZFIN;Acc:ZDB-GENE-090312-209]
94. si:ch211-11c15.3 si:ch211-11c15.3 1279 2.519 - - - - - 0.967 0.813 0.739 -
95. stmn2a ENSDARG00000033234 2272 2.516 - - - - - 0.913 0.832 - 0.771 stathmin 2a [Source:ZFIN;Acc:ZDB-GENE-041010-85]
96. clvs2 ENSDARG00000053122 1390 2.515 0.774 - - - - - 0.921 0.820 - clavesin 2 [Source:ZFIN;Acc:ZDB-GENE-041014-313]
97. tmie ENSDARG00000069423 305 2.506 0.833 - - - - 0.749 0.924 - - transmembrane inner ear [Source:ZFIN;Acc:ZDB-GENE-061207-9]
98. epha4b ENSDARG00000011600 3110 2.499 0.715 - - - - 0.926 0.858 - - eph receptor A4b [Source:ZFIN;Acc:ZDB-GENE-030826-6]
99. glrbb ENSDARG00000052769, ENSDARG00000113828 467 2.497 - 0.717 - - - 0.859 0.921 - - glycine receptor, beta b [Source:ZFIN;Acc:ZDB-GENE-040801-106]
100. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 2.497 0.856 - - - - 0.869 - - 0.772 POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]

There are 1957 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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