Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for her2

Gene Name Gene ID Reads Annotation
her2 ENSDARG00000038205 3219 hairy-related 2 [Source:ZFIN;Acc:ZDB-GENE-980526-274]










Genes with expression patterns similar to her2

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. her2 ENSDARG00000038205 3219 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 hairy-related 2 [Source:ZFIN;Acc:ZDB-GENE-980526-274]
2. sox19a ENSDARG00000010770, ENSDARG00000110497 4683 4.425 0.907 - - - - 0.792 0.987 0.855 0.884 SRY (sex determining region Y)-box 19a [Source:ZFIN;Acc:ZDB-GENE-980526-102]
3. st8sia2 ENSDARG00000018788 2183 4.375 0.795 0.980 - 0.830 0.837 - 0.933 - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-020919-4]
4. fyna ENSDARG00000011370 1679 4.202 0.860 - - 0.729 - 0.899 0.961 0.753 - FYN proto-oncogene, Src family tyrosine kinase a [Source:ZFIN;Acc:ZDB-GENE-030903-5]
5. pou3f3a ENSDARG00000042032 2835 4.042 0.749 - - 0.721 - 0.844 0.917 - 0.811 POU class 3 homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-980526-220]
6. CABZ01028287.1 CABZ01028287.1 626 3.939 0.881 - - 0.747 - 0.786 0.813 - 0.712
7. zeb2a ENSDARG00000062338, ENSDARG00000111349, ENSDARG00000115964 6087 3.938 0.876 - 0.702 - 0.704 0.750 0.906 - - zinc finger E-box binding homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-070912-553]
8. wasf3 wasf3 3287 3.814 0.750 - 0.735 - 0.811 0.725 0.793 - -
9. nes ENSDARG00000088805 2710 3.595 0.955 - - 0.828 - 0.846 0.966 - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
10. clstn1 ENSDARG00000031720 5286 3.581 0.840 0.962 - - - 0.834 0.945 - - calsyntenin 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1064]
11. AGO1 ENSDARG00000092644 4521 3.568 0.930 - - - 0.832 0.841 0.965 - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
12. nova2 ENSDARG00000017673 7685 3.521 0.956 - - 0.775 - 0.811 0.979 - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
13. C8H1orf106 C8H1orf106 2690 3.501 0.924 - - - - 0.916 0.938 - 0.723
14. epha4b ENSDARG00000011600 3110 3.49 0.954 - 0.754 - - 0.812 0.970 - - eph receptor A4b [Source:ZFIN;Acc:ZDB-GENE-030826-6]
15. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 3.434 0.944 - - 0.767 - 0.760 0.963 - - cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
16. gsx1 ENSDARG00000035735 1243 3.418 - - - - - 0.765 0.965 0.887 0.801 GS homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-041008-135]
17. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 3.417 0.907 - - 0.753 - 0.791 0.966 - - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
18. nbeaa ENSDARG00000070080 862 3.398 0.949 - - 0.732 - 0.749 0.968 - - neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
19. cspg5a ENSDARG00000069981 1699 3.396 0.886 - - - - 0.815 0.951 0.744 - chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
20. DTX4 ENSDARG00000076302 2642 3.387 0.782 - 0.763 - 0.919 - 0.923 - - deltex E3 ubiquitin ligase 4 [Source:HGNC Symbol;Acc:HGNC:29151]
21. gng3 ENSDARG00000009553 2530 3.363 0.917 - - - 0.704 0.773 0.969 - - guanine nucleotide binding protein (G protein), gamma 3 [Source:ZFIN;Acc:ZDB-GENE-010705-1]
22. TUBA1A ENSDARG00000001889 25294 3.355 0.834 - - 0.826 - 0.713 0.982 - - tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
23. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 3.353 0.880 - - 0.723 - 0.781 0.969 - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
24. dbx1a ENSDARG00000086393 3161 3.323 0.780 - - - - 0.826 0.871 0.846 - developing brain homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-000128-8]
25. nrarpb ENSDARG00000018958 6225 3.313 0.883 - - 0.724 - 0.722 0.984 - - NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
26. fabp7a ENSDARG00000007697 5211 3.25 0.734 - - 0.854 - 0.823 0.839 - - fatty acid binding protein 7, brain, a [Source:ZFIN;Acc:ZDB-GENE-000627-1]
27. myt1a ENSDARG00000074030, ENSDARG00000116035 2839 3.239 - - - - 0.768 0.747 0.968 0.756 - myelin transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3885]
28. dbx1b ENSDARG00000001859, ENSDARG00000113468 810 3.21 0.800 - - - 0.787 0.798 0.825 - - developing brain homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-000128-11]
29. metrn ENSDARG00000030367, ENSDARG00000112407, ENSDARG00000115842 7032 3.202 0.744 - - 0.831 - 0.710 0.917 - - meteorin, glial cell differentiation regulator [Source:ZFIN;Acc:ZDB-GENE-050102-1]
30. lfng ENSDARG00000037879 11783 3.156 0.921 - 0.716 0.710 - 0.809 - - - LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:ZFIN;Acc:ZDB-GENE-980605-16]
31. vezf1a ENSDARG00000008247 1449 3.107 - - - 0.729 - - 0.852 0.750 0.776 vascular endothelial zinc finger 1a [Source:ZFIN;Acc:ZDB-GENE-040108-4]
32. pcdh19 ENSDARG00000034344 2378 3.084 - - - 0.733 - 0.836 0.813 - 0.702 protocadherin 19 [Source:ZFIN;Acc:ZDB-GENE-030131-4218]
33. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 8110 3.049 0.709 - - 0.762 0.877 - 0.701 - - ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
34. kdm1a ENSDARG00000060679 6152 2.95 0.767 - - 0.777 - - 0.702 0.704 - lysine (K)-specific demethylase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7828]
35. tmie ENSDARG00000069423 305 2.85 0.959 - - - - 0.922 0.969 - - transmembrane inner ear [Source:ZFIN;Acc:ZDB-GENE-061207-9]
36. neurog1 ENSDARG00000056130 3924 2.832 0.943 - - - - 0.904 0.985 - - neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]
37. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 2.805 0.953 - - 0.868 - - 0.984 - - leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
38. tmem35 ENSDARG00000052567 5685 2.755 0.877 - - - - 0.927 0.951 - - transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
39. dbx2 2971 2.746 0.890 - - - - 0.887 0.969 - - developing brain homeobox 2
40. EPB41L1 EPB41L1 1896 2.724 0.910 - - - - 0.868 0.946 - -
41. SPOCK1 ENSDARG00000074644 794 2.706 0.927 - - - - 0.804 0.975 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:ZFIN;Acc:ZDB-GENE-110428-1]
42. CABZ01111990.1 CABZ01111990.1 4374 2.704 0.884 - - - - 0.856 0.964 - -
43. celf4 ENSDARG00000070045 1537 2.679 0.927 - - - - 0.791 0.961 - - CUGBP, Elav-like family member 4 [Source:ZFIN;Acc:ZDB-GENE-040718-300]
44. vim ENSDARG00000010008 3551 2.678 0.957 - - - - 0.815 0.906 - - vimentin [Source:ZFIN;Acc:ZDB-GENE-011212-3]
45. slc8a2b ENSDARG00000100592 598 2.676 0.904 - - - - 0.790 0.982 - - solute carrier family 8 (sodium/calcium exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-050419-209]
46. gfap ENSDARG00000025301 5584 2.668 0.973 - - - - 0.713 0.982 - - glial fibrillary acidic protein [Source:ZFIN;Acc:ZDB-GENE-990914-3]
47. tuba1c ENSDARG00000055216 8384 2.668 0.973 - - - - 0.717 0.978 - - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
48. sypb ENSDARG00000002230 262 2.665 0.884 - - - - 0.814 0.967 - - synaptophysin b [Source:ZFIN;Acc:ZDB-GENE-040718-205]
49. nadl1.1 1200 2.663 0.900 - - - - 0.805 0.958 - - neural adhesion molecule L1.1, transcript variant X1
50. pax6a ENSDARG00000103379 3061 2.655 0.899 - - - - 0.819 0.937 - - paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
51. dpysl3 ENSDARG00000002587 4381 2.65 0.879 - - - - 0.809 0.962 - - dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
52. dla ENSDARG00000010791 9281 2.648 0.944 - - - - - 0.987 - 0.717 deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
53. syt12 ENSDARG00000101776 215 2.642 0.797 - - - - 0.894 0.951 - - synaptotagmin XII [Source:ZFIN;Acc:ZDB-GENE-081022-147]
54. CHL1 CHL1 1553 2.641 0.869 - - - - 0.823 0.949 - -
55. sox2 ENSDARG00000070913 2763 2.637 0.922 - - 0.762 - - 0.953 - - SRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
56. slc18a3a ENSDARG00000006356 1285 2.636 0.825 - - - - 0.826 0.985 - - solute carrier family 18 (vesicular acetylcholine transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-060929-990]
57. pou3f2a ENSDARG00000070220 817 2.633 - - - 0.748 - 0.932 0.953 - - POU class 3 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-139]
58. atp6v0cb ENSDARG00000036577 3472 2.628 0.883 - - - - 0.764 0.981 - - ATPase H+ transporting V0 subunit cb [Source:ZFIN;Acc:ZDB-GENE-030131-4127]
59. PPP2R5B ENSDARG00000054931 213 2.626 0.894 - - - - 0.803 0.929 - - protein phosphatase 2, regulatory subunit B', beta [Source:ZFIN;Acc:ZDB-GENE-101208-1]
60. syngr3a ENSDARG00000014871 405 2.626 0.887 - - - - 0.799 0.940 - - synaptogyrin 3a [Source:ZFIN;Acc:ZDB-GENE-050522-541]
61. her15.1 ENSDARG00000054560, ENSDARG00000054562 1500 2.625 - - - 0.806 - 0.880 0.939 - - hairy and enhancer of split-related 15, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030707-2]
62. dnajc5aa ENSDARG00000042948 2885 2.624 0.845 - - - - 0.815 0.964 - - DnaJ (Hsp40) homolog, subfamily C, member 5aa [Source:ZFIN;Acc:ZDB-GENE-031113-20]
63. pou3f2b ENSDARG00000076262, ENSDARG00000112713 2439 2.623 0.786 - - - - 0.888 0.949 - - POU class 3 homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-980526-370]
64. vgf ENSDARG00000105529 247 2.618 0.857 - - - - 0.797 0.964 - - VGF nerve growth factor inducible [Source:ZFIN;Acc:ZDB-GENE-121009-2]
65. stmn1b ENSDARG00000033655 9491 2.617 0.937 - - 0.705 - - 0.975 - - stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
66. ctnnd2b ENSDARG00000003779 964 2.617 0.869 - - - - 0.781 0.967 - - catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
67. sox19b ENSDARG00000040266 532 2.616 0.869 - - - - 0.823 0.924 - - SRY (sex determining region Y)-box 19b [Source:ZFIN;Acc:ZDB-GENE-010111-1]
68. clstn3 ENSDARG00000073883 590 2.612 0.925 - - - - 0.759 0.928 - - calsyntenin 3 [Source:ZFIN;Acc:ZDB-GENE-100921-73]
69. mllt11 ENSDARG00000071026 2518 2.61 0.938 - - - - - 0.933 0.739 - MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
70. nefmb ENSDARG00000043697 2052 2.604 0.888 - - - - 0.890 0.826 - - neurofilament, medium polypeptide b [Source:ZFIN;Acc:ZDB-GENE-070103-4]
71. nell2b ENSDARG00000062797 854 2.604 0.783 - - - - 0.850 0.971 - - neural EGFL like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-8026]
72. wu:fq41a10 wu:fq41a10 7009 2.592 - - - 0.802 0.881 - 0.909 - -
73. stx1b ENSDARG00000000503 2724 2.591 0.909 - - - - 0.716 0.966 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
74. nhlh2 ENSDARG00000025495 1860 2.588 0.762 - - - - 0.865 0.961 - - nescient helix loop helix 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1809]
75. cadpsb ENSDARG00000070567 458 2.582 0.780 - - - - 0.842 0.960 - - Ca2+-dependent activator protein for secretion b [Source:ZFIN;Acc:ZDB-GENE-110621-2]
76. rbfox3 rbfox3 1443 2.581 0.854 - - - - 0.768 0.959 - -
77. UBE2QL1 ENSDARG00000079276 3474 2.58 0.907 - - - - 0.763 0.910 - - ubiquitin-conjugating enzyme E2Q family-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8137]
78. SYT2 ENSDARG00000014169 265 2.577 0.907 - - - - 0.844 0.826 - - synaptotagmin 2 [Source:HGNC Symbol;Acc:HGNC:11510]
79. negr1 ENSDARG00000021607 1051 2.575 0.921 - - - - 0.754 0.900 - - neuronal growth regulator 1 [Source:ZFIN;Acc:ZDB-GENE-040822-27]
80. islr2 ENSDARG00000051875, ENSDARG00000109523 2288 2.566 0.757 - - - - 0.824 0.985 - - immunoglobulin superfamily containing leucine-rich repeat 2 [Source:ZFIN;Acc:ZDB-GENE-050320-95]
81. CU928222.1 ENSDARG00000097436 1662 2.566 0.869 - - - - 0.729 0.968 - -
82. STMN3 ENSDARG00000038465 1009 2.561 0.846 - - - - 0.746 0.969 - - stathmin-like 3 [Source:ZFIN;Acc:ZDB-GENE-081124-2]
83. FGFBP3 FGFBP3 993 2.56 - - - 0.752 - 0.876 0.932 - -
84. msi1 ENSDARG00000010710 2634 2.557 0.762 - - - - 0.823 0.972 - - musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]
85. chga ENSDARG00000008829 1086 2.553 0.795 - - - - 0.809 0.949 - - chromogranin A [Source:ZFIN;Acc:ZDB-GENE-041010-161]
86. rheb ENSDARG00000090213 1432 2.552 0.783 - - - - 0.862 0.907 - - Ras homolog, mTORC1 binding [Source:ZFIN;Acc:ZDB-GENE-040426-1690]
87. dync1i1 ENSDARG00000060948 554 2.552 0.732 - - - - 0.932 0.888 - - dynein, cytoplasmic 1, intermediate chain 1 [Source:ZFIN;Acc:ZDB-GENE-061215-62]
88. npas3b npas3b 1446 2.548 0.823 - - 0.748 - - 0.977 - -
89. rfx4 ENSDARG00000026395, ENSDARG00000116861 2047 2.547 0.884 - - - 0.795 - 0.868 - - regulatory factor X, 4 [Source:ZFIN;Acc:ZDB-GENE-040909-2]
90. slc35g2b ENSDARG00000045447 378 2.546 0.845 - - - - 0.759 0.942 - - solute carrier family 35, member G2b [Source:ZFIN;Acc:ZDB-GENE-050320-142]
91. TUBB8P7_2 TUBB8P7_2 565 2.544 0.875 - - - - 0.755 0.914 - -
92. pou4f1 ENSDARG00000005559 821 2.542 0.800 - - - - - 0.950 - 0.792 POU class 4 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-000523-2]
93. ckbb ENSDARG00000043257 3503 2.54 0.888 - - - - 0.766 0.886 - - creatine kinase, brain b [Source:ZFIN;Acc:ZDB-GENE-020103-2]
94. scn8aa ENSDARG00000005775 792 2.536 0.848 - - - - 0.747 0.941 - - sodium channel, voltage gated, type VIII, alpha subunit a [Source:ZFIN;Acc:ZDB-GENE-000828-1]
95. zic1 ENSDARG00000015567 2520 2.536 0.862 - - - - - 0.891 - 0.783 zic family member 1 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-000208-4]
96. tmem59l ENSDARG00000003655 1536 2.523 0.888 - - - - 0.791 0.844 - - transmembrane protein 59-like [Source:ZFIN;Acc:ZDB-GENE-040426-2651]
97. Mar-09 Mar-09 126 2.522 0.813 - - - - 0.812 0.897 - -
98. ZFHX3 ENSDARG00000103057 7759 2.522 0.850 - - - - 0.745 0.927 - - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
99. myt1b ENSDARG00000102879 5411 2.521 0.850 - - - - 0.703 0.968 - - myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
100. grin1a ENSDARG00000027828 1327 2.519 0.711 - - - - 0.872 0.936 - - glutamate receptor, ionotropic, N-methyl D-aspartate 1a [Source:ZFIN;Acc:ZDB-GENE-051202-1]

There are 2394 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA