Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for her13

Gene Name Gene ID Reads Annotation
her13 ENSDARG00000007097 2000 hairy-related 13 [Source:ZFIN;Acc:ZDB-GENE-050228-1]










Genes with expression patterns similar to her13

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. her13 ENSDARG00000007097 2000 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 hairy-related 13 [Source:ZFIN;Acc:ZDB-GENE-050228-1]
2. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 4.112 0.899 - - 0.744 - - 0.935 0.713 0.821 leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
3. si:ch73-21g5.7 ENSDARG00000093156 9412 4.078 0.866 - 0.777 - - - 0.923 0.780 0.732 si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
4. st18 663 4.008 0.814 0.715 - - - - 0.969 0.750 0.760 suppression of tumorigenicity 18, zinc finger
5. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 3.921 0.809 0.822 0.703 - - - 0.819 - 0.768 cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
6. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 3.433 0.915 0.841 - 0.759 - - 0.918 - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
7. dla ENSDARG00000010791 9281 3.368 0.891 0.775 - - - - 0.922 - 0.780 deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
8. gpm6aa ENSDARG00000055455, ENSDARG00000110942 9156 3.361 0.915 0.767 - - - - 0.954 - 0.725 glycoprotein M6Aa [Source:ZFIN;Acc:ZDB-GENE-030710-7]
9. her4.2_1 ENSDARG00000056729, ENSDARG00000094426 2383 3.351 0.773 0.823 - - - - 0.979 - 0.776 hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
10. fyna ENSDARG00000011370 1679 3.341 0.913 0.889 - 0.703 - - 0.836 - - FYN proto-oncogene, Src family tyrosine kinase a [Source:ZFIN;Acc:ZDB-GENE-030903-5]
11. nes ENSDARG00000088805 2710 3.339 0.937 0.705 - - - - 0.971 - 0.726 nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
12. CABZ01028287.1 CABZ01028287.1 626 3.306 0.932 0.760 - - - - 0.892 - 0.722
13. CLIP3 ENSDARG00000054456 734 3.295 - 0.834 - - - - 0.903 0.767 0.791 CAP-GLY domain containing linker protein 3 [Source:ZFIN;Acc:ZDB-GENE-131127-193]
14. wu:fq41a10 wu:fq41a10 7009 3.285 - 0.713 - 0.760 - 0.957 0.855 - -
15. clvs2 ENSDARG00000053122 1390 3.274 0.847 - - - - - 0.964 0.752 0.711 clavesin 2 [Source:ZFIN;Acc:ZDB-GENE-041014-313]
16. ELOVL4 ELOVL4 3026 3.268 0.788 0.865 - - - - 0.814 - 0.801
17. nbeaa ENSDARG00000070080 862 3.156 0.838 - - 0.729 - - 0.822 - 0.767 neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
18. AGO1 ENSDARG00000092644 4521 3.115 0.805 - 0.733 - - - 0.866 - 0.711 argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
19. fzd3a ENSDARG00000021664 1958 3.11 0.776 - 0.746 - - - 0.845 - 0.743 frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
20. npas3b npas3b 1446 3.107 0.752 - 0.709 0.711 - - 0.935 - -
21. BX957337.1 BX957337.1 1685 3.103 0.733 0.805 - 0.718 - - 0.847 - -
22. negr1 ENSDARG00000021607 1051 3.102 0.761 - - 0.742 - - 0.862 - 0.737 neuronal growth regulator 1 [Source:ZFIN;Acc:ZDB-GENE-040822-27]
23. FAM171A2 FAM171A2 707 3.03 0.837 0.715 - - - - 0.775 - 0.703
24. pou3f2a ENSDARG00000070220 817 3.011 0.748 - - - - - 0.835 0.722 0.706 POU class 3 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-139]
25. CU928222.1 ENSDARG00000097436 1662 2.702 0.969 0.808 - - - - 0.925 - -
26. nrarpb ENSDARG00000018958 6225 2.676 0.926 - - - - - 0.941 - 0.809 NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
27. gad1b ENSDARG00000027419 440 2.658 0.953 0.729 - - - - 0.976 - - glutamate decarboxylase 1b [Source:ZFIN;Acc:ZDB-GENE-030909-3]
28. pcdh1gc5 ENSDARG00000104826 10052 2.625 0.829 0.839 - - - - 0.957 - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
29. nova2 ENSDARG00000017673 7685 2.612 0.906 - - 0.773 - - 0.933 - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
30. neurog1 ENSDARG00000056130 3924 2.602 0.862 0.813 - - - - 0.927 - - neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]
31. hmp19 2554 2.602 0.913 - - - - - 0.963 - 0.726 HMP19 protein
32. zgc:113531 ENSDARG00000038794 2063 2.601 0.802 0.890 - - - - 0.909 - - zgc:113531 [Source:ZFIN;Acc:ZDB-GENE-050320-52]
33. nhlh2 ENSDARG00000025495 1860 2.595 0.844 0.784 - - - - 0.967 - - nescient helix loop helix 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1809]
34. sox2 ENSDARG00000070913 2763 2.595 0.868 0.768 - - - - 0.959 - - SRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
35. slc35g2b ENSDARG00000045447 378 2.578 0.846 0.779 - - - - 0.953 - - solute carrier family 35, member G2b [Source:ZFIN;Acc:ZDB-GENE-050320-142]
36. atp1b2a ENSDARG00000099203 4010 2.541 - 0.829 - - - - 0.922 - 0.790 ATPase Na+/K+ transporting subunit beta 2a [Source:ZFIN;Acc:ZDB-GENE-001127-2]
37. Sep-03 Sep-03 1124 2.54 0.853 - - - - - 0.931 - 0.756
38. calca ENSDARG00000056590 150 2.54 0.793 0.806 - - - - 0.941 - - calcitonin/calcitonin-related polypeptide, alpha [Source:ZFIN;Acc:ZDB-GENE-040718-173]
39. ADAMTS3 ENSDARG00000060127 2839 2.536 0.782 0.774 - - - - 0.980 - - ADAM metallopeptidase with thrombospondin type 1 motif, 3 [Source:ZFIN;Acc:ZDB-GENE-110223-1]
40. SLC5A7 SLC5A7 453 2.532 0.840 0.783 - - - - 0.909 - -
41. slc18a3a ENSDARG00000006356 1285 2.526 0.811 0.783 - - - - 0.932 - - solute carrier family 18 (vesicular acetylcholine transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-060929-990]
42. robo3 ENSDARG00000005645 2818 2.519 0.718 - - - - 0.970 0.831 - - roundabout, axon guidance receptor, homolog 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-000209-4]
43. psmg3 ENSDARG00000098391 920 2.513 0.798 - - - - 0.973 - 0.742 - proteasome (prosome, macropain) assembly chaperone 3 [Source:ZFIN;Acc:ZDB-GENE-040718-262]
44. tuba1c ENSDARG00000055216 8384 2.513 0.844 - - - - - 0.892 - 0.777 tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
45. st8sia2 ENSDARG00000018788 2183 2.509 0.761 - 0.781 - - - 0.967 - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-020919-4]
46. her4.1 ENSDARG00000056732 1264 2.489 0.852 - - - - - 0.916 0.721 - hairy-related 4, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-980526-521]
47. mxi1 ENSDARG00000040884, ENSDARG00000111950 3239 2.487 - - - - - 0.979 0.753 - 0.755 max interactor 1, dimerization protein [Source:ZFIN;Acc:ZDB-GENE-990415-151]
48. tox ENSDARG00000032317 9126 2.487 0.851 - - - - - 0.876 - 0.760 thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]
49. CABZ01029738.1 CABZ01029738.1 327 2.485 0.873 0.741 - - - - 0.871 - -
50. ptprnb ENSDARG00000077047 2743 2.483 0.780 0.735 - - - - 0.968 - - protein tyrosine phosphatase, receptor type, Nb [Source:ZFIN;Acc:ZDB-GENE-100505-1]
51. ROBO3_1 ROBO3_1 468 2.475 0.835 0.827 - - - - 0.813 - -
52. rap2ip rap2ip 681 2.468 - - - - - - 0.968 0.791 0.709
53. clstn1 ENSDARG00000031720 5286 2.458 0.848 - - 0.732 - - 0.878 - - calsyntenin 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1064]
54. dld ENSDARG00000020219 4928 2.457 0.770 - - - - - 0.967 - 0.720 deltaD [Source:ZFIN;Acc:ZDB-GENE-990415-47]
55. tia1 ENSDARG00000052536, ENSDARG00000114478 4392 2.453 - - - - - - 0.824 0.869 0.760 TIA1 cytotoxic granule-associated RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-1506]
56. CABZ01111990.1 CABZ01111990.1 4374 2.45 0.777 - - - - - 0.885 0.788 -
57. tmem35 ENSDARG00000052567 5685 2.449 0.720 - - - - - 0.936 - 0.793 transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
58. elavl4 ENSDARG00000045639 998 2.446 - 0.728 - - - - 0.896 - 0.822 ELAV like neuron-specific RNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-990415-246]
59. dpysl5a ENSDARG00000011141 1827 2.436 0.806 - - - - - 0.842 - 0.788 dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
60. dync1i1 ENSDARG00000060948 554 2.426 0.735 - 0.708 - - - 0.983 - - dynein, cytoplasmic 1, intermediate chain 1 [Source:ZFIN;Acc:ZDB-GENE-061215-62]
61. grin1a ENSDARG00000027828 1327 2.425 0.742 0.815 - - - - 0.868 - - glutamate receptor, ionotropic, N-methyl D-aspartate 1a [Source:ZFIN;Acc:ZDB-GENE-051202-1]
62. nkx6.1 ENSDARG00000022569 3779 2.418 0.741 0.727 - - - - 0.950 - - NK6 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040718-178]
63. golga7ba ENSDARG00000036295 1460 2.415 0.759 - - - - - 0.938 - 0.718 golgin A7 family, member Ba [Source:ZFIN;Acc:ZDB-GENE-050417-14]
64. epha3l epha3l 1441 2.413 0.835 0.753 - - - - 0.825 - -
65. dpysl2b ENSDARG00000032083, ENSDARG00000109782 3487 2.413 0.731 - 0.750 - - - 0.932 - - dihydropyrimidinase-like 2b [Source:ZFIN;Acc:ZDB-GENE-031105-1]
66. her4.3 ENSDARG00000070770 613 2.411 - - - - - - 0.975 0.722 0.714 hairy-related 4, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-081030-7]
67. bhlhe22 ENSDARG00000058039 1673 2.408 0.709 0.818 - - - - 0.881 - - basic helix-loop-helix family, member e22 [Source:ZFIN;Acc:ZDB-GENE-040426-1411]
68. myt1b ENSDARG00000102879 5411 2.398 0.812 - - 0.730 - - 0.856 - - myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
69. SPOCK1 ENSDARG00000074644 794 2.396 0.737 - - - - - 0.930 - 0.729 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:ZFIN;Acc:ZDB-GENE-110428-1]
70. nadl1.1 1200 2.395 0.710 0.727 - - - - 0.958 - - neural adhesion molecule L1.1, transcript variant X1
71. cnrip1a ENSDARG00000091683 1491 2.394 0.782 - - - - - 0.906 0.706 - cannabinoid receptor interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-126]
72. atp6v0cb ENSDARG00000036577 3472 2.391 0.740 - - - - - 0.914 - 0.737 ATPase H+ transporting V0 subunit cb [Source:ZFIN;Acc:ZDB-GENE-030131-4127]
73. sox19b ENSDARG00000040266 532 2.39 0.705 0.799 - - - - 0.886 - - SRY (sex determining region Y)-box 19b [Source:ZFIN;Acc:ZDB-GENE-010111-1]
74. rfx4 ENSDARG00000026395, ENSDARG00000116861 2047 2.388 0.774 0.755 - - - - 0.859 - - regulatory factor X, 4 [Source:ZFIN;Acc:ZDB-GENE-040909-2]
75. mllt11 ENSDARG00000071026 2518 2.381 0.752 - - - - - 0.907 - 0.722 MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
76. mir10d-1 mir10d-1 860 2.381 0.719 0.803 - - - - 0.859 - -
77. hmgb1b ENSDARG00000030479 10398 2.376 0.727 - 0.742 - - - 0.907 - - high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]
78. pcyt1ba ENSDARG00000058162 206 2.374 0.854 0.729 - - - - 0.791 - - phosphate cytidylyltransferase 1, choline, beta a [Source:ZFIN;Acc:ZDB-GENE-061220-4]
79. zgc:100906 ENSDARG00000033599 344 2.365 0.728 0.723 - - - - 0.914 - - zgc:100906 [Source:ZFIN;Acc:ZDB-GENE-040801-20]
80. pax6a ENSDARG00000103379 3061 2.36 0.785 0.794 - - - - 0.781 - - paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
81. prdm12b ENSDARG00000007430 914 2.357 0.813 - - - - - 0.824 0.720 - PR domain containing 12b [Source:ZFIN;Acc:ZDB-GENE-041114-172]
82. lhx5 ENSDARG00000057936 785 2.344 - 0.729 - - - - 0.884 0.731 - LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]
83. rtca ENSDARG00000002215 3558 2.335 - - - - - - 0.774 0.817 0.744 RNA 3'-terminal phosphate cyclase [Source:ZFIN;Acc:ZDB-GENE-030131-9687]
84. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 2.333 0.847 - 0.722 - - - - - 0.764 POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
85. unc13c 197 2.332 0.744 0.751 - - - - 0.837 - - unc-13 homolog C (C. elegans)
86. hmgb3a ENSDARG00000056725 15668 2.33 0.767 - - - - - 0.851 - 0.712 high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
87. stx1b ENSDARG00000000503 2724 2.329 0.714 - - - - - 0.858 - 0.757 syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
88. rtn1b ENSDARG00000021143 1682 2.325 - - - - - - 0.826 0.742 0.757 reticulon 1b [Source:ZFIN;Acc:ZDB-GENE-030710-3]
89. dlb ENSDARG00000004232 5120 2.315 0.816 0.759 - - - - - - 0.740 deltaB [Source:ZFIN;Acc:ZDB-GENE-980526-114]
90. TMEM57 TMEM57 260 2.309 - 0.729 - - - - 0.815 - 0.765
91. tubb5 ENSDARG00000037997 18691 2.301 0.723 - - 0.701 - - 0.877 - - tubulin, beta 5 [Source:ZFIN;Acc:ZDB-GENE-031110-4]
92. neurod neurod 1189 2.295 0.803 - - 0.770 - - 0.722 - -
93. gnao1a ENSDARG00000016676 8184 2.295 0.703 - - - - - 0.889 - 0.703 guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O, a [Source:ZFIN;Acc:ZDB-GENE-040426-1757]
94. pcdh19 ENSDARG00000034344 2378 2.288 - - - - - - 0.710 0.834 0.744 protocadherin 19 [Source:ZFIN;Acc:ZDB-GENE-030131-4218]
95. celf3a ENSDARG00000034668 2432 2.271 - - - - - - 0.736 0.788 0.747 cugbp, Elav-like family member 3a [Source:ZFIN;Acc:ZDB-GENE-000501-2]
96. dbx1a ENSDARG00000086393 3161 2.26 0.781 0.767 - - - - 0.712 - - developing brain homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-000128-8]
97. wnt4b ENSDARG00000040159, ENSDARG00000115606 490 2.257 0.706 0.733 - - - - 0.818 - - wingless-type MMTV integration site family, member 4b [Source:ZFIN;Acc:ZDB-GENE-000411-1]
98. sox3 ENSDARG00000053569 12016 2.249 0.821 - 0.715 - - - 0.713 - - SRY (sex determining region Y)-box 3 [Source:ZFIN;Acc:ZDB-GENE-980526-333]
99. fabp7a ENSDARG00000007697 5211 2.242 0.711 - - 0.704 - - 0.827 - - fatty acid binding protein 7, brain, a [Source:ZFIN;Acc:ZDB-GENE-000627-1]
100. scg2b ENSDARG00000038574 345 2.237 - 0.729 - - 0.729 - 0.779 - - secretogranin II (chromogranin C), b [Source:ZFIN;Acc:ZDB-GENE-061103-160]

There are 2103 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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