Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for her12

Gene Name Gene ID Reads Annotation
her12 ENSDARG00000032963 754 hairy-related 12 [Source:ZFIN;Acc:ZDB-GENE-040824-5]










Genes with expression patterns similar to her12

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. her12 ENSDARG00000032963 754 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 hairy-related 12 [Source:ZFIN;Acc:ZDB-GENE-040824-5]
2. EFCC1 ENSDARG00000077826 1359 3.127 0.758 0.756 - - - 0.705 0.908 - - EF-hand and coiled-coil domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-120813-3]
3. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 2.644 0.832 - - - - 0.866 0.946 - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
4. nes ENSDARG00000088805 2710 2.594 0.845 - - - - 0.800 0.949 - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
5. nrarpb ENSDARG00000018958 6225 2.594 0.818 - - - - 0.834 0.942 - - NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
6. CU928222.1 ENSDARG00000097436 1662 2.577 0.800 - - - - 0.870 0.907 - -
7. nova2 ENSDARG00000017673 7685 2.573 0.869 - - - - 0.767 0.937 - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
8. hmp19 2554 2.553 0.819 - - - - 0.793 0.941 - - HMP19 protein
9. mapk12b ENSDARG00000006409 2246 2.55 0.888 - - - - 0.727 0.935 - - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
10. plp1a ENSDARG00000103732 3544 2.545 0.806 - - - - 0.794 0.945 - - proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
11. cldn5a ENSDARG00000043716 3865 2.545 0.876 - - - - 0.784 0.885 - - claudin 5a [Source:ZFIN;Acc:ZDB-GENE-040426-2442]
12. pcdh1gc5 ENSDARG00000104826 10052 2.545 0.855 - - - - 0.762 0.928 - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
13. vim ENSDARG00000010008 3551 2.542 0.837 - - - - 0.808 0.897 - - vimentin [Source:ZFIN;Acc:ZDB-GENE-011212-3]
14. sox19a ENSDARG00000010770, ENSDARG00000110497 4683 2.537 0.786 - - - - 0.825 0.926 - - SRY (sex determining region Y)-box 19a [Source:ZFIN;Acc:ZDB-GENE-980526-102]
15. ctnnd2b ENSDARG00000003779 964 2.519 0.864 - - - - 0.723 0.932 - - catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
16. sypa ENSDARG00000042974, ENSDARG00000110528 3217 2.503 0.837 - - - - 0.750 0.916 - - synaptophysin a [Source:ZFIN;Acc:ZDB-GENE-031104-2]
17. ptprnb ENSDARG00000077047 2743 2.5 0.881 - - - - 0.784 0.835 - - protein tyrosine phosphatase, receptor type, Nb [Source:ZFIN;Acc:ZDB-GENE-100505-1]
18. CHL1 CHL1 1553 2.499 0.853 - - - - 0.756 0.890 - -
19. cldn19 ENSDARG00000044569 281 2.494 0.866 - - - - 0.799 0.829 - - claudin 19 [Source:ZFIN;Acc:ZDB-GENE-050417-242]
20. gfap ENSDARG00000025301 5584 2.492 0.822 - - - - 0.754 0.916 - - glial fibrillary acidic protein [Source:ZFIN;Acc:ZDB-GENE-990914-3]
21. si:ch73-21g5.7 ENSDARG00000093156 9412 2.48 0.766 - - - - 0.776 0.938 - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
22. CDK5R1 CDK5R1 562 2.476 0.708 - - - - 0.885 0.883 - -
23. neurog1 ENSDARG00000056130 3924 2.472 0.779 - - - - 0.748 0.945 - - neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]
24. chat chat 463 2.471 0.714 - - - - 0.818 0.939 - -
25. slc32a1 ENSDARG00000059775 1092 2.469 0.829 - - - - 0.772 0.868 - - solute carrier family 32 (GABA vesicular transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-061201-1]
26. atp1a1b ENSDARG00000019856, ENSDARG00000115121 1953 2.467 0.879 - - - - 0.790 0.798 - - ATPase Na+/K+ transporting subunit alpha 1b [Source:ZFIN;Acc:ZDB-GENE-001212-5]
27. epha4b ENSDARG00000011600 3110 2.466 0.819 - - - - 0.768 0.879 - - eph receptor A4b [Source:ZFIN;Acc:ZDB-GENE-030826-6]
28. vgf ENSDARG00000105529 247 2.457 0.728 - - - - 0.797 0.932 - - VGF nerve growth factor inducible [Source:ZFIN;Acc:ZDB-GENE-121009-2]
29. lhfpl4a ENSDARG00000111810 206 2.454 0.910 - - - - 0.715 0.829 - - lipoma HMGIC fusion partner-like 4a [Source:ZFIN;Acc:ZDB-GENE-111017-1]
30. clvs2 ENSDARG00000053122 1390 2.453 0.793 - - - - - 0.935 0.725 - clavesin 2 [Source:ZFIN;Acc:ZDB-GENE-041014-313]
31. tuba1c ENSDARG00000055216 8384 2.453 0.813 - - - - 0.739 0.901 - - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
32. tmem35 ENSDARG00000052567 5685 2.449 0.785 - - - - 0.766 0.898 - - transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
33. msi1 ENSDARG00000010710 2634 2.446 0.718 - - - - 0.853 0.875 - - musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]
34. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 2.441 0.775 - - - - - 0.878 0.788 - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
35. slc1a3a ENSDARG00000104431 9888 2.434 0.786 - - - - 0.729 0.919 - - solute carrier family 1 (glial high affinity glutamate transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2159]
36. mir10d-1 mir10d-1 860 2.433 0.704 - - - - 0.859 0.870 - -
37. ZFHX3 ENSDARG00000103057 7759 2.432 0.771 - - - - 0.746 0.915 - - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
38. tmie ENSDARG00000069423 305 2.421 0.776 - - - - 0.712 0.933 - - transmembrane inner ear [Source:ZFIN;Acc:ZDB-GENE-061207-9]
39. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 2.414 0.782 - - - - 0.758 0.874 - - cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
40. sv2bb ENSDARG00000060711 196 2.405 0.749 - - - - 0.751 0.905 - - synaptic vesicle glycoprotein 2Bb [Source:ZFIN;Acc:ZDB-GENE-030131-2789]
41. ADAM22 ENSDARG00000060532 2259 2.404 - - - - - 0.706 0.937 0.761 - ADAM metallopeptidase domain 22 [Source:ZFIN;Acc:ZDB-GENE-070810-1]
42. DTX4 ENSDARG00000076302 2642 2.396 0.755 - - - - - 0.906 0.735 - deltex E3 ubiquitin ligase 4 [Source:HGNC Symbol;Acc:HGNC:29151]
43. hmgb3a ENSDARG00000056725 15668 2.39 0.744 - - - - 0.843 0.803 - - high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
44. metrn ENSDARG00000030367, ENSDARG00000112407, ENSDARG00000115842 7032 2.39 0.711 - - - - 0.842 0.837 - - meteorin, glial cell differentiation regulator [Source:ZFIN;Acc:ZDB-GENE-050102-1]
45. csdc2a ENSDARG00000041323, ENSDARG00000115932 490 2.389 - - - - - 0.818 0.823 0.748 - cold shock domain containing C2, RNA binding a [Source:ZFIN;Acc:ZDB-GENE-040718-442]
46. chga ENSDARG00000008829 1086 2.386 0.732 - - - - 0.758 0.896 - - chromogranin A [Source:ZFIN;Acc:ZDB-GENE-041010-161]
47. SLC5A7 SLC5A7 453 2.383 0.727 - - - - 0.756 0.900 - -
48. nhlh2 ENSDARG00000025495 1860 2.378 0.735 - - - - 0.701 0.942 - - nescient helix loop helix 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1809]
49. st18 663 2.375 0.718 - - - - 0.734 0.923 - - suppression of tumorigenicity 18, zinc finger
50. her4.1 ENSDARG00000056732 1264 2.367 0.743 - - - - 0.713 0.911 - - hairy-related 4, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-980526-521]
51. si:ch73-265d7.2 ENSDARG00000116713 2142 2.365 0.711 - - - - 0.746 0.908 - - si:ch73-265d7.2 [Source:ZFIN;Acc:ZDB-GENE-100922-146]
52. itm2ca ENSDARG00000043448 1265 2.362 - - - - - 0.717 0.913 0.732 - integral membrane protein 2Ca [Source:ZFIN;Acc:ZDB-GENE-040718-284]
53. sept5a ENSDARG00000013843 1206 2.362 0.760 - - - - 0.735 0.867 - - septin 5a [Source:ZFIN;Acc:ZDB-GENE-030131-7868]
54. pou3f2b ENSDARG00000076262, ENSDARG00000112713 2439 2.362 0.732 - - - - - 0.915 0.715 - POU class 3 homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-980526-370]
55. lmo3 ENSDARG00000008720, ENSDARG00000114518 4773 2.351 0.726 - - - - 0.728 0.897 - - LIM domain only 3 [Source:ZFIN;Acc:ZDB-GENE-050522-201]
56. rfx4 ENSDARG00000026395, ENSDARG00000116861 2047 2.349 0.732 - - - - 0.770 0.847 - - regulatory factor X, 4 [Source:ZFIN;Acc:ZDB-GENE-040909-2]
57. scrt2 ENSDARG00000056175 4331 2.346 0.803 - - - - 0.724 0.819 - - scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
58. CABZ01111990.1 CABZ01111990.1 4374 2.337 0.708 - - - - - 0.894 0.735 -
59. si:dkey-25e11.10 si:dkey-25e11.10 955 2.332 0.853 - - - - 0.712 0.767 - -
60. Sep-03 Sep-03 1124 2.32 0.786 - - - - 0.706 0.828 - -
61. zgc:113531 ENSDARG00000038794 2063 2.315 0.712 - - - - 0.761 0.842 - - zgc:113531 [Source:ZFIN;Acc:ZDB-GENE-050320-52]
62. scocb ENSDARG00000002217 1844 2.31 - - - - - 0.704 0.819 0.787 - short coiled-coil protein b [Source:ZFIN;Acc:ZDB-GENE-041010-41]
63. kcnc3a ENSDARG00000055855 1821 2.307 0.723 - - - - 0.715 0.869 - - potassium voltage-gated channel, Shaw-related subfamily, member 3a [Source:ZFIN;Acc:ZDB-GENE-100901-1]
64. sall1a ENSDARG00000074319, ENSDARG00000111696 1486 2.306 0.702 - - - - 0.730 0.874 - - spalt-like transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-020228-2]
65. b4galt2 ENSDARG00000077994 480 2.303 0.749 - - - - 0.817 0.737 - - UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-070912-258]
66. ptbp2b ENSDARG00000015901 2458 2.303 0.768 - - - - 0.714 0.821 - - polypyrimidine tract binding protein 2b [Source:ZFIN;Acc:ZDB-GENE-060810-49]
67. snap25a ENSDARG00000020609 4537 2.293 0.727 - - - - 0.707 0.859 - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
68. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 2.284 0.789 - - - - 0.710 0.785 - - methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
69. adam11 ENSDARG00000079204 298 2.274 0.730 - - - - 0.710 0.834 - - ADAM metallopeptidase domain 11 [Source:ZFIN;Acc:ZDB-GENE-070808-3]
70. ckbb ENSDARG00000043257 3503 2.273 0.726 - - - - 0.700 0.847 - - creatine kinase, brain b [Source:ZFIN;Acc:ZDB-GENE-020103-2]
71. zgc:109889 ENSDARG00000069600, ENSDARG00000113538 554 2.272 0.726 - - - - - 0.795 0.751 - zgc:109889 [Source:ZFIN;Acc:ZDB-GENE-050522-547]
72. hoxa9b ENSDARG00000056819 3081 2.271 0.702 - - - - 0.704 0.865 - - homeobox A9b [Source:ZFIN;Acc:ZDB-GENE-000823-2]
73. rbfox1 ENSDARG00000014746 2808 2.206 0.744 - - - - 0.722 0.740 - - RNA binding fox-1 homolog 1 [Source:ZFIN;Acc:ZDB-GENE-040927-11]
74. ctbp2 ctbp2 3255 2.189 - 0.744 - - - 0.709 0.736 - -
75. neurod neurod 1189 2.163 0.716 - - - - 0.702 0.745 - -
76. khsrp ENSDARG00000026489 15738 2.131 0.719 - - - - 0.703 0.709 - - KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
77. sox2 ENSDARG00000070913 2763 1.837 0.887 - - - - - 0.950 - - SRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
78. cadpsb ENSDARG00000070567 458 1.825 0.910 - - - - - 0.915 - - Ca2+-dependent activator protein for secretion b [Source:ZFIN;Acc:ZDB-GENE-110621-2]
79. AGO1 ENSDARG00000092644 4521 1.812 0.897 - - - - - 0.915 - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
80. gpr144 gpr144 479 1.8 0.942 - - - - - 0.858 - -
81. dla ENSDARG00000010791 9281 1.795 0.850 - - - - - 0.945 - - deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
82. st8sia2 ENSDARG00000018788 2183 1.787 - - - - - 0.865 0.922 - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-020919-4]
83. dpysl5a ENSDARG00000011141 1827 1.78 0.889 - - - - - 0.891 - - dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
84. GLRA3 ENSDARG00000011066 242 1.771 0.855 - - - - - 0.916 - - glycine receptor, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-020402-1]
85. dnmt3ab ENSDARG00000015566 1206 1.771 0.882 - - - - - 0.889 - - DNA (cytosine-5-)-methyltransferase 3 alpha b [Source:ZFIN;Acc:ZDB-GENE-050314-3]
86. nadl1.1 1200 1.766 - - - - - 0.844 0.922 - - neural adhesion molecule L1.1, transcript variant X1
87. CABZ01070258.1 ENSDARG00000105687 3643 1.765 0.881 - - - - - 0.884 - -
88. her13 ENSDARG00000007097 2000 1.765 0.851 - - - - - 0.914 - - hairy-related 13 [Source:ZFIN;Acc:ZDB-GENE-050228-1]
89. ptprna ENSDARG00000058646 1327 1.76 - - - - - 0.817 0.943 - - protein tyrosine phosphatase, receptor type, Na [Source:ZFIN;Acc:ZDB-GENE-030131-3511]
90. STMN3 ENSDARG00000038465 1009 1.757 - - - - - 0.846 0.911 - - stathmin-like 3 [Source:ZFIN;Acc:ZDB-GENE-081124-2]
91. PROCA1 ENSDARG00000069823 343 1.755 0.854 - - - - - 0.901 - - protein interacting with cyclin A1 [Source:ZFIN;Acc:ZDB-GENE-110418-1]
92. hoxa3a ENSDARG00000103862 2239 1.75 0.803 - - - - - 0.947 - - homeobox A3a [Source:ZFIN;Acc:ZDB-GENE-000823-3]
93. her2 ENSDARG00000038205 3219 1.748 0.818 - - - - - 0.930 - - hairy-related 2 [Source:ZFIN;Acc:ZDB-GENE-980526-274]
94. gpm6aa ENSDARG00000055455, ENSDARG00000110942 9156 1.744 0.807 - - - - - 0.937 - - glycoprotein M6Aa [Source:ZFIN;Acc:ZDB-GENE-030710-7]
95. TUBA1A ENSDARG00000001889 25294 1.743 - - - - - 0.813 0.930 - - tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
96. eno2 ENSDARG00000014287 2162 1.739 - - - - - 0.792 0.947 - - enolase 2 [Source:ZFIN;Acc:ZDB-GENE-040704-27]
97. nkx6.2 ENSDARG00000104735 5081 1.735 - - - - - 0.817 0.918 - - NK6 homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-070626-1]
98. myt1b ENSDARG00000102879 5411 1.732 - - - - - 0.844 0.888 - - myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
99. irx1b ENSDARG00000056594 2224 1.731 0.814 - - - - - 0.917 - - iroquois homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-010716-1]
100. celf4 ENSDARG00000070045 1537 1.729 0.814 - - - - - 0.915 - - CUGBP, Elav-like family member 4 [Source:ZFIN;Acc:ZDB-GENE-040718-300]

There are 1499 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA