Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for hdac3

Gene Name Gene ID Reads Annotation
hdac3 ENSDARG00000037514, ENSDARG00000110316 1985 histone deacetylase 3 [Source:ZFIN;Acc:ZDB-GENE-040426-847]










Genes with expression patterns similar to hdac3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. hdac3 ENSDARG00000037514, ENSDARG00000110316 1985 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 histone deacetylase 3 [Source:ZFIN;Acc:ZDB-GENE-040426-847]
2. puf60a ENSDARG00000032175 5618 2.465 - - - - - 0.750 - 0.931 0.784 poly-U binding splicing factor a [Source:ZFIN;Acc:ZDB-GENE-030131-2891]
3. yipf4 ENSDARG00000030957, ENSDARG00000109994 4665 2.411 - 0.748 - - - 0.808 - 0.855 - Yip1 domain family, member 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2253]
4. bcas2 ENSDARG00000043631 1971 2.384 - - - - - 0.864 0.806 - 0.714 BCAS2, pre-mRNA processing factor [Source:ZFIN;Acc:ZDB-GENE-030408-5]
5. rbmx ENSDARG00000014244 3445 2.298 - - - 0.700 - - 0.842 - 0.756 RNA binding motif protein X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-579]
6. crk ENSDARG00000055635, ENSDARG00000109497, ENSDARG00000115801 5105 2.212 0.711 - - - - 0.781 0.720 - - v-crk avian sarcoma virus CT10 oncogene homolog [Source:ZFIN;Acc:ZDB-GENE-040801-148]
7. rngtt ENSDARG00000032261 833 1.795 - - - - - 0.866 - 0.929 - RNA guanylyltransferase and 5'-phosphatase [Source:ZFIN;Acc:ZDB-GENE-040426-2087]
8. tmem65 ENSDARG00000076393 1646 1.733 - 0.806 - - - - - 0.927 - transmembrane protein 65 [Source:ZFIN;Acc:ZDB-GENE-081022-99]
9. tmem50a ENSDARG00000015757 3244 1.716 - - - - - 0.808 - 0.908 - transmembrane protein 50A [Source:ZFIN;Acc:ZDB-GENE-040426-2937]
10. dpp3 ENSDARG00000020676 2393 1.687 - - - - - - 0.825 0.862 - dipeptidyl-peptidase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1247]
11. lbr ENSDARG00000014013 4835 1.674 - - - - - - - 0.958 0.716 lamin B receptor [Source:ZFIN;Acc:ZDB-GENE-030804-11]
12. syne2b ENSDARG00000053484 9225 1.669 - 0.732 - - - - - 0.937 - spectrin repeat containing, nuclear envelope 2b [Source:ZFIN;Acc:ZDB-GENE-071218-5]
13. tbl1xr1b ENSDARG00000008966 2203 1.662 - 0.761 - - - - 0.901 - - transducin (beta)-like 1 X-linked receptor 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1192]
14. smg7 ENSDARG00000060767 2759 1.661 - - - - - 0.825 - 0.836 - SMG7 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-030131-9122]
15. nans nans 1365 1.651 - 0.735 - - - - - 0.916 -
16. ezh2 ENSDARG00000010571 3273 1.649 0.840 - - - - - - - 0.809 enhancer of zeste 2 polycomb repressive complex 2 subunit [Source:ZFIN;Acc:ZDB-GENE-041111-259]
17. wdfy4 ENSDARG00000077009 802 1.647 - - - - - 0.731 - 0.916 - WDFY family member 4 [Source:ZFIN;Acc:ZDB-GENE-090313-322]
18. hnrnpd ENSDARG00000059246, ENSDARG00000109297, ENSDARG00000113453 3440 1.641 - - - - - 0.873 0.768 - - heterogeneous nuclear ribonucleoprotein D [Source:ZFIN;Acc:ZDB-GENE-070424-97]
19. rtf1 ENSDARG00000008947 6596 1.641 - - - - - - - 0.866 0.775 RTF1 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-030131-6778]
20. sbds ENSDARG00000027803 846 1.637 - - - - - 0.713 - 0.924 - SBDS, ribosome maturation factor [Source:ZFIN;Acc:ZDB-GENE-040426-1116]
21. eif2s1a ENSDARG00000005827 5992 1.636 - - - - - 0.860 - - 0.776 eukaryotic translation initiation factor 2, subunit 1 alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-526]
22. xrcc1 ENSDARG00000009494 1346 1.636 - - - - - 0.886 - - 0.750 X-ray repair complementing defective repair in Chinese hamster cells 1 [Source:ZFIN;Acc:ZDB-GENE-040822-30]
23. fkbp7 ENSDARG00000010962 2986 1.634 - 0.794 - - - - - 0.840 - FK506 binding protein 7 [Source:ZFIN;Acc:ZDB-GENE-030616-182]
24. safb ENSDARG00000020467 5608 1.631 - - - - - 0.868 - - 0.763 scaffold attachment factor B [Source:ZFIN;Acc:ZDB-GENE-030131-698]
25. creb1a ENSDARG00000053586 5068 1.625 - - - - - - - 0.888 0.737 cAMP responsive element binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-040426-750]
26. syncripl ENSDARG00000026723 3889 1.621 - 0.741 - - - - - 0.880 - synaptotagmin binding, cytoplasmic RNA interacting protein, like [Source:ZFIN;Acc:ZDB-GENE-030131-3104]
27. cyth1a ENSDARG00000005159, ENSDARG00000076742 2796 1.611 - - - - - 0.711 - 0.900 - cytohesin 1a [Source:ZFIN;Acc:ZDB-GENE-030131-657]
28. dlx2a ENSDARG00000079964 1253 1.608 - 0.716 - - - - - 0.892 - distal-less homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-212]
29. si:dkey-117n7.3 ENSDARG00000092944 2518 1.606 - - - - - 0.712 - 0.894 - si:dkey-117n7.3 [Source:ZFIN;Acc:ZDB-GENE-060503-143]
30. FP102157.1 FP102157.1 1096 1.606 - - - - - - 0.700 0.906 -
31. lfng ENSDARG00000037879 11783 1.606 - - - - - - - 0.851 0.755 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:ZFIN;Acc:ZDB-GENE-980605-16]
32. smarca5 ENSDARG00000052348 15433 1.605 - - - - - - - 0.855 0.750 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 [Source:ZFIN;Acc:ZDB-GENE-021125-1]
33. prnprs3 ENSDARG00000003705 1854 1.604 0.715 - - - - - - 0.889 - prion protein, related sequence 3 [Source:ZFIN;Acc:ZDB-GENE-041221-3]
34. smek1 ENSDARG00000042187 3509 1.602 - - - - - 0.875 - - 0.727 SMEK homolog 1, suppressor of mek1 (Dictyostelium) [Source:ZFIN;Acc:ZDB-GENE-030131-3958]
35. faf1 ENSDARG00000022418 2922 1.6 - - - - - 0.885 0.715 - - Fas (TNFRSF6) associated factor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2863]
36. SLC22A16 ENSDARG00000015869 1086 1.599 - 0.780 - - - 0.819 - - - solute carrier family 22 (organic cation/carnitine transporter), member 16 [Source:ZFIN;Acc:ZDB-GENE-041001-166]
37. actn1 ENSDARG00000007219 2919 1.593 - - - - - 0.712 - 0.881 - actinin, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-081113-4]
38. brd1b ENSDARG00000051798 1712 1.584 - - - - - 0.826 - - 0.758 bromodomain containing 1b [Source:ZFIN;Acc:ZDB-GENE-070209-98]
39. matr3l1.1_1 ENSDARG00000000394, ENSDARG00000001162 1860 1.576 - - - - - 0.850 - - 0.726 matrin 3-like 1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-40]
40. CABZ01003826.1_1 CABZ01003826.1_1 1154 1.575 - 0.769 - - - 0.806 - - -
41. vamp5 ENSDARG00000068262 2413 1.571 - 0.788 - - - - 0.783 - - vesicle-associated membrane protein 5 [Source:ZFIN;Acc:ZDB-GENE-030131-4209]
42. adnpa ENSDARG00000062002, ENSDARG00000115617 2009 1.568 - 0.798 - - - - - - 0.770 activity-dependent neuroprotector homeobox a [Source:ZFIN;Acc:ZDB-GENE-061215-112]
43. CUL3 CUL3 1133 1.565 - - - - - 0.861 0.704 - -
44. ppil2 ENSDARG00000002016, ENSDARG00000116167 914 1.559 - - - 0.746 - 0.813 - - - peptidylprolyl isomerase (cyclophilin)-like 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1096]
45. gtf2e2 ENSDARG00000012672, ENSDARG00000109689, ENSDARG00000115211 1677 1.556 - - - - - 0.847 0.709 - - general transcription factor IIE, polypeptide 2, beta [Source:ZFIN;Acc:ZDB-GENE-030131-6794]
46. si:dkey-240e12.6 ENSDARG00000110137 674 1.555 - 0.731 - - - 0.824 - - - si:dkey-240e12.6 [Source:ZFIN;Acc:ZDB-GENE-050208-367]
47. adssl ENSDARG00000012399 2271 1.552 - 0.848 - - - - - - 0.704 adenylosuccinate synthase, like [Source:ZFIN;Acc:ZDB-GENE-020419-28]
48. dpysl3 ENSDARG00000002587 4381 1.549 - - - - - - - 0.800 0.749 dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
49. sap30l ENSDARG00000030213 5795 1.547 - 0.767 - - - 0.780 - - - sap30-like [Source:ZFIN;Acc:ZDB-GENE-030131-5287]
50. psmd8 ENSDARG00000020454 6645 1.539 - - - - - 0.720 - 0.819 - proteasome 26S subunit, non-ATPase 8 [Source:ZFIN;Acc:ZDB-GENE-040625-136]
51. med12 ENSDARG00000103953, ENSDARG00000109815, ENSDARG00000116469 1894 1.535 - - - - - 0.786 - - 0.749 mediator complex subunit 12 [Source:ZFIN;Acc:ZDB-GENE-060125-1]
52. alox12 ENSDARG00000069463 5787 1.534 - - - - - 0.749 - 0.785 - arachidonate 12-lipoxygenase [Source:ZFIN;Acc:ZDB-GENE-030131-1452]
53. acvr1b acvr1b 2963 1.533 - 0.712 - - - - - - 0.821
54. ptbp2b ENSDARG00000015901 2458 1.531 - 0.747 - - - - - - 0.784 polypyrimidine tract binding protein 2b [Source:ZFIN;Acc:ZDB-GENE-060810-49]
55. tia1 ENSDARG00000052536, ENSDARG00000114478 4392 1.526 - - - - 0.713 - - - 0.813 TIA1 cytotoxic granule-associated RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-1506]
56. cnn3a ENSDARG00000099510 6063 1.513 - - 0.703 - - - - 0.810 - calponin 3, acidic a [Source:ZFIN;Acc:ZDB-GENE-030131-5130]
57. foxp1b ENSDARG00000014181 2594 1.512 - - - - - - 0.784 - 0.728 forkhead box P1b [Source:ZFIN;Acc:ZDB-GENE-041203-1]
58. sumo3a ENSDARG00000028119 13447 1.508 - - - - - - 0.757 - 0.751 small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
59. llgl1 ENSDARG00000009693 4205 1.504 - 0.718 - - - - 0.786 - - lethal giant larvae homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-060825-69]
60. zswim5 ENSDARG00000055900 4243 1.504 - 0.781 - - - - - - 0.723 zinc finger, SWIM-type containing 5 [Source:ZFIN;Acc:ZDB-GENE-030925-30]
61. eif4h ENSDARG00000042252 6742 1.497 - - - - - - 0.707 - 0.790 eukaryotic translation initiation factor 4h [Source:ZFIN;Acc:ZDB-GENE-010328-19]
62. hsbp1a ENSDARG00000069425 1086 1.495 0.781 - - - - 0.714 - - - heat shock factor binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050320-136]
63. setd8b 2528 1.493 - 0.723 - - - 0.770 - - - SET domain containing (lysine methyltransferase) 8b
64. ranbp9 ENSDARG00000061048 2687 1.492 - - - - - 0.772 0.720 - - RAN binding protein 9 [Source:ZFIN;Acc:ZDB-GENE-021030-5]
65. plk1 ENSDARG00000058471, ENSDARG00000111745 7020 1.489 - 0.741 - - - - - 0.748 - polo-like kinase 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-021115-7]
66. mxd3 ENSDARG00000098350 3040 1.481 - - - - - 0.745 - - 0.736 MAX dimerization protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1588]
67. prkar1aa ENSDARG00000076128 6565 1.479 - - - - - 0.721 - 0.758 - protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) a [Source:ZFIN;Acc:ZDB-GENE-050116-2]
68. dnajc1 ENSDARG00000001940 2848 1.475 - 0.730 - - - - 0.745 - - DnaJ (Hsp40) homolog, subfamily C, member 1 [Source:ZFIN;Acc:ZDB-GENE-061103-529]
69. UTP20 ENSDARG00000099280 1672 1.473 - 0.758 - - - - - - 0.715 UTP20 small subunit (SSU) processome component [Source:ZFIN;Acc:ZDB-GENE-080225-38]
70. tmem243b ENSDARG00000033179, ENSDARG00000114077, ENSDARG00000116817 1171 1.472 - - - - - 0.737 0.735 - - transmembrane protein 243, mitochondrial b [Source:ZFIN;Acc:ZDB-GENE-040426-2205]
71. sptssa ENSDARG00000071203 2306 1.466 - 0.702 - - - 0.764 - - - serine palmitoyltransferase, small subunit A [Source:ZFIN;Acc:ZDB-GENE-050320-26]
72. zgc:110329 ENSDARG00000035532, ENSDARG00000110423 2229 1.465 0.744 - - - - - - - 0.721 zgc:110329 [Source:ZFIN;Acc:ZDB-GENE-050417-334]
73. rbm15b ENSDARG00000078966, ENSDARG00000112832 1888 1.465 - 0.737 - 0.728 - - - - - RNA binding motif protein 15B [Source:ZFIN;Acc:ZDB-GENE-080204-91]
74. RAPGEFL1 ENSDARG00000079912 1074 1.458 - 0.720 - - - 0.738 - - - Rap guanine nucleotide exchange factor (GEF)-like 1 [Source:ZFIN;Acc:ZDB-GENE-131121-404]
75. snap29 ENSDARG00000038518 1609 1.458 - - - - - 0.730 0.728 - - synaptosomal-associated protein 29 [Source:ZFIN;Acc:ZDB-GENE-041111-226]
76. usp7 ENSDARG00000073710 7017 1.455 0.710 - - - - - - - 0.745 ubiquitin specific peptidase 7 (herpes virus-associated) [Source:ZFIN;Acc:ZDB-GENE-030131-3656]
77. tbl1x ENSDARG00000060438 1386 1.454 - - - - - - 0.721 - 0.733 transducin beta like 1 X-linked [Source:ZFIN;Acc:ZDB-GENE-070209-131]
78. hoxb10a ENSDARG00000011579 2135 1.452 0.708 - - - - - 0.744 - - homeobox B10a [Source:ZFIN;Acc:ZDB-GENE-000328-2]
79. xpo7 ENSDARG00000005540, ENSDARG00000110221 4566 1.452 - - - 0.701 - - 0.751 - - exportin 7 [Source:ZFIN;Acc:ZDB-GENE-060628-2]
80. si:dkeyp-44a8.2 ENSDARG00000092493 8308 1.448 - - - - - - 0.705 - 0.743 si:dkeyp-44a8.2 [Source:ZFIN;Acc:ZDB-GENE-070705-542]
81. rbm14a ENSDARG00000012723, ENSDARG00000114603 3802 1.447 - - - - - - 0.734 - 0.713 RNA binding motif protein 14a [Source:ZFIN;Acc:ZDB-GENE-050522-496]
82. lypla2 ENSDARG00000053656 8971 1.443 - - - - - - 0.719 - 0.724 lysophospholipase II [Source:ZFIN;Acc:ZDB-GENE-040426-1715]
83. CABZ01080568.2 CABZ01080568.2 2137 1.442 - - - - - - 0.712 - 0.730
84. npm1a ENSDARG00000014329, ENSDARG00000113199 31910 1.434 - - - - - - 0.713 - 0.721 nucleophosmin 1a [Source:ZFIN;Acc:ZDB-GENE-021028-1]
85. slkb ENSDARG00000012574 1099 1.433 0.702 - - - - - - - 0.731 STE20-like kinase b [Source:ZFIN;Acc:ZDB-GENE-030131-1684]
86. srp19 ENSDARG00000035699 2624 1.42 - - - - - 0.705 0.715 - - signal recognition particle 19 [Source:ZFIN;Acc:ZDB-GENE-040426-2657]
87. sik2b ENSDARG00000062315 1303 1.418 - 0.711 - - - - 0.707 - - salt-inducible kinase 2b [Source:ZFIN;Acc:ZDB-GENE-071012-1]
88. rnd1l rnd1l 984 1.414 0.703 - - 0.711 - - - - -
89. si:dkey-9i23.15 ENSDARG00000093997 544 0.957 - - - - - - - 0.957 - si:dkey-9i23.15 [Source:ZFIN;Acc:ZDB-GENE-090313-361]
90. FUCA1 FUCA1 1446 0.955 - - - - - - - 0.955 -
91. rapgef2 ENSDARG00000005482 2586 0.947 - - - - - - - 0.947 - Rap guanine nucleotide exchange factor (GEF) 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6959]
92. lsm12a ENSDARG00000028848, ENSDARG00000115800 3499 0.944 - - - - - - - 0.944 - LSM12 homolog a [Source:ZFIN;Acc:ZDB-GENE-040516-12]
93. neo1 neo1 4056 0.94 - - - - - - - 0.940 -
94. NCOA7 NCOA7 658 0.936 - - - - - - - 0.936 -
95. suz12a ENSDARG00000070256 2229 0.934 - - - - - - - 0.934 - SUZ12, polycomb repressive complex 2 subunit a [Source:ZFIN;Acc:ZDB-GENE-040801-36]
96. sf3b2 ENSDARG00000018049 4675 0.933 - - - - - - - 0.933 - splicing factor 3b, subunit 2 [Source:ZFIN;Acc:ZDB-GENE-070928-1]
97. ddx42 ENSDARG00000037928 1659 0.932 - - - - - - - 0.932 - DEAD (Asp-Glu-Ala-Asp) box helicase 42 [Source:ZFIN;Acc:ZDB-GENE-050706-53]
98. crmp1 ENSDARG00000056742 332 0.932 - - - - - - - 0.932 - collapsin response mediator protein 1 [Source:ZFIN;Acc:ZDB-GENE-050720-1]
99. necap2 ENSDARG00000046002 4372 0.931 - - - - - - - 0.931 - NECAP endocytosis associated 2 [Source:ZFIN;Acc:ZDB-GENE-050522-67]
100. inip ENSDARG00000028523 1925 0.931 - - - - - - - 0.931 - ints3 and nabp interacting protein [Source:ZFIN;Acc:ZDB-GENE-040426-961]

There are 1387 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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