Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for hdac1

Gene Name Gene ID Reads Annotation
hdac1 ENSDARG00000015427 19804 histone deacetylase 1 [Source:ZFIN;Acc:ZDB-GENE-020419-32]










Genes with expression patterns similar to hdac1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. hdac1 ENSDARG00000015427 19804 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 histone deacetylase 1 [Source:ZFIN;Acc:ZDB-GENE-020419-32]
2. rbb4 rbb4 15541 4.284 - - 0.873 0.925 0.886 0.721 - - 0.879
3. anp32b ENSDARG00000023330 25013 3.458 - 0.890 - 0.904 0.907 0.757 - - - acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:ZFIN;Acc:ZDB-GENE-030131-719]
4. hmgb3a ENSDARG00000056725 15668 3.378 0.837 - - 0.825 - 0.861 - - 0.855 high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
5. caprin1a ENSDARG00000009346, ENSDARG00000112212 9675 3.361 - - 0.821 0.888 - 0.809 - 0.843 - cell cycle associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-226]
6. smc1al ENSDARG00000058203 8838 3.325 0.751 - 0.826 - - 0.848 - - 0.900 structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]
7. zgc:158409 zgc:158409 21963 3.325 0.827 - - - 0.877 0.797 - 0.824 -
8. khsrp ENSDARG00000026489 15738 3.249 0.761 - - - - 0.936 - 0.831 0.721 KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
9. kif11 ENSDARG00000010948 4973 3.247 - - 0.883 - - 0.755 - 0.775 0.834 kinesin family member 11 [Source:ZFIN;Acc:ZDB-GENE-020426-1]
10. hmgb1b ENSDARG00000030479 10398 3.199 0.721 - 0.845 - - 0.790 - 0.843 - high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]
11. tmpob ENSDARG00000022978 8121 3.165 0.724 - 0.831 - - - - 0.822 0.788 thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
12. CR936437.1 CR936437.1 6465 3.164 0.705 - 0.841 - - - - 0.853 0.765
13. fam60al 2846 3.155 0.722 - 0.719 - - 0.867 - - 0.847 family with sequence similarity 60, member A, like
14. tmem35 ENSDARG00000052567 5685 3.078 0.771 - - - - 0.759 - 0.742 0.806 transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
15. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 3.059 0.794 - 0.717 - - 0.715 - - 0.833 cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
16. nr2f1a ENSDARG00000052695 5037 3.054 0.740 0.813 - - - 0.756 - - 0.745 nuclear receptor subfamily 2, group F, member 1a [Source:ZFIN;Acc:ZDB-GENE-980526-115]
17. ANKRD11 ENSDARG00000051886 10024 3.036 0.714 - 0.766 0.766 - 0.790 - - - ankyrin repeat domain 11 [Source:ZFIN;Acc:ZDB-GENE-030131-3932]
18. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 3.035 0.776 - - - - 0.806 - 0.741 0.712 methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
19. nrarpa ENSDARG00000091419, ENSDARG00000111485 7867 3.03 0.789 - 0.763 - - 0.767 - - 0.711 NOTCH regulated ankyrin repeat protein a [Source:ZFIN;Acc:ZDB-GENE-030515-6]
20. dpysl5a ENSDARG00000011141 1827 2.999 0.787 - 0.707 - - 0.723 - - 0.782 dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
21. tma7 ENSDARG00000071670 13372 2.983 0.701 0.842 - - - 0.700 - - 0.740 translation machinery associated 7 homolog [Source:ZFIN;Acc:ZDB-GENE-061027-176]
22. tox ENSDARG00000032317 9126 2.978 0.722 - - - - 0.727 - 0.743 0.786 thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]
23. hnrnpab hnrnpab 72354 2.63 0.869 - - - - 0.910 - 0.851 -
24. srsf7a ENSDARG00000035325, ENSDARG00000110705 11788 2.568 - - 0.832 - - 0.818 - - 0.918 serine/arginine-rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798]
25. puf60b ENSDARG00000001241 13827 2.567 - - - - - 0.837 0.993 - 0.737 poly-U binding splicing factor b [Source:ZFIN;Acc:ZDB-GENE-040625-116]
26. snrpe ENSDARG00000033175 7462 2.537 0.844 - - 0.898 - 0.795 - - - small nuclear ribonucleoprotein polypeptide E [Source:ZFIN;Acc:ZDB-GENE-040426-1112]
27. nucks1a ENSDARG00000078473 28285 2.529 - - 0.828 - - 0.930 - 0.771 - nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
28. sncb ENSDARG00000104945 8197 2.522 0.763 - - - - 0.775 0.984 - - synuclein, beta [Source:ZFIN;Acc:ZDB-GENE-040426-1615]
29. nusap1 ENSDARG00000002403 6953 2.515 - - - 0.900 - 0.888 - 0.727 - nucleolar and spindle associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-030827-5]
30. hnrnpub ENSDARG00000004735 16496 2.506 0.812 - - - - 0.799 - - 0.895 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
31. hnrnpa0b ENSDARG00000036162, ENSDARG00000112653 27740 2.499 - - - 0.805 - 0.863 - - 0.831 heterogeneous nuclear ribonucleoprotein A0b [Source:ZFIN;Acc:ZDB-GENE-030131-6154]
32. zgc:123194 zgc:123194 69174 2.494 0.860 - - 0.929 - - - 0.705 -
33. inab ENSDARG00000053248 3239 2.486 - - - - - 0.772 0.984 - 0.730 internexin neuronal intermediate filament protein, alpha b [Source:ZFIN;Acc:ZDB-GENE-990415-83]
34. wdr33 ENSDARG00000018272 4076 2.477 - - 0.731 - - - 0.983 - 0.763 WD repeat domain 33 [Source:ZFIN;Acc:ZDB-GENE-040924-3]
35. sox3 ENSDARG00000053569 12016 2.476 0.820 - 0.838 - - - - 0.818 - SRY (sex determining region Y)-box 3 [Source:ZFIN;Acc:ZDB-GENE-980526-333]
36. sumo3a ENSDARG00000028119 13447 2.461 0.758 - - - - 0.890 - - 0.813 small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
37. HNRNPAB HNRNPAB 22267 2.458 - - 0.755 - - - - 0.843 0.860
38. hmga1a ENSDARG00000028335 254077 2.456 0.753 - - - - - 0.842 0.861 - high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
39. snrpc ENSDARG00000009871 9567 2.446 0.714 0.864 - - - - - - 0.868 small nuclear ribonucleoprotein polypeptide C [Source:ZFIN;Acc:ZDB-GENE-020419-26]
40. MAP4K4 ENSDARG00000098670 4665 2.445 - - 0.769 - - 0.841 - - 0.835 mitogen-activated protein kinase kinase kinase kinase 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6722]
41. ddx39ab ENSDARG00000015111 11619 2.443 - - - - - 0.724 - 0.821 0.898 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab [Source:ZFIN;Acc:ZDB-GENE-040426-2902]
42. calm2a ENSDARG00000031427, ENSDARG00000111871 43643 2.432 0.712 - - - - 0.742 0.978 - - calmodulin 2a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030804-3]
43. pcdh1gc5 ENSDARG00000104826 10052 2.427 0.820 - 0.811 - - 0.796 - - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
44. celf3a ENSDARG00000034668 2432 2.422 - - - 0.820 - 0.807 - - 0.795 cugbp, Elav-like family member 3a [Source:ZFIN;Acc:ZDB-GENE-000501-2]
45. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 72444 2.422 0.805 - 0.787 - - - - - 0.830 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
46. sepw2a 8597 2.419 0.742 - - 0.851 - 0.826 - - - selenoprotein W, 2a
47. ppiaa ENSDARG00000009212 290634 2.413 - - - - 0.793 0.769 - 0.851 - peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
48. srsf3b ENSDARG00000059360 14888 2.409 - - - 0.865 - 0.719 - - 0.825 serine/arginine-rich splicing factor 3b [Source:ZFIN;Acc:ZDB-GENE-071005-2]
49. sumo2b ENSDARG00000102741 18514 2.407 0.743 0.884 - - - - - 0.780 - small ubiquitin-like modifier 2b [Source:ZFIN;Acc:ZDB-GENE-040801-7]
50. zgc:112425 zgc:112425 293873 2.399 - - - - - 0.806 0.893 0.700 -
51. ubap2 ubap2 4167 2.394 - - - 0.831 - 0.821 - - 0.742
52. wdr5 ENSDARG00000016903 4834 2.394 0.764 0.830 - - - - - - 0.800 WD repeat domain 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2082]
53. zc4h2 ENSDARG00000015314, ENSDARG00000112180 5141 2.389 - - 0.779 0.861 - 0.749 - - - zinc finger, C4H2 domain containing [Source:ZFIN;Acc:ZDB-GENE-030131-2207]
54. lfng ENSDARG00000037879 11783 2.382 0.802 - - - - 0.818 - - 0.762 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:ZFIN;Acc:ZDB-GENE-980605-16]
55. snap25a ENSDARG00000020609 4537 2.377 0.748 - - - 0.884 0.745 - - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
56. elavl1 11672 2.375 - - 0.750 - - 0.858 - 0.767 - ELAV like RNA binding protein 1, transcript variant X3
57. ZFHX3 ENSDARG00000103057 7759 2.374 0.771 - 0.751 - - 0.852 - - - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
58. rnf2 ENSDARG00000010381 3427 2.373 - 0.830 - - - 0.839 - - 0.704 ring finger protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5243]
59. chaf1a ENSDARG00000062152, ENSDARG00000114749 5342 2.371 - 0.854 - - - 0.743 - - 0.774 chromatin assembly factor 1, subunit A (p150) [Source:ZFIN;Acc:ZDB-GENE-030131-5366]
60. rbpjb ENSDARG00000052091 3122 2.361 - - 0.752 - - 0.813 - - 0.796 recombination signal binding protein for immunoglobulin kappa J region b [Source:ZFIN;Acc:ZDB-GENE-070319-1]
61. nono ENSDARG00000020482, ENSDARG00000115783 12482 2.36 0.720 - - - - 0.882 - - 0.758 non-POU domain containing, octamer-binding [Source:ZFIN;Acc:ZDB-GENE-030131-713]
62. TNRC6C_2 TNRC6C_2 2444 2.356 - - 0.789 - - 0.826 - 0.741 -
63. hes6 ENSDARG00000019335 4754 2.354 0.729 - - - - 0.819 - 0.806 - hes family bHLH transcription factor 6 [Source:ZFIN;Acc:ZDB-GENE-030828-5]
64. tuba1c ENSDARG00000055216 8384 2.35 0.809 - - - - 0.783 - - 0.758 tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
65. kif22 ENSDARG00000102624 3694 2.35 - - 0.789 - - 0.755 - - 0.806 kinesin family member 22 [Source:ZFIN;Acc:ZDB-GENE-080204-34]
66. pds5a ENSDARG00000055022, ENSDARG00000115793 3842 2.35 - 0.789 0.775 - - 0.786 - - - PDS5 cohesin associated factor A [Source:ZFIN;Acc:ZDB-GENE-040426-1612]
67. ewsr1b ENSDARG00000020465, ENSDARG00000117011 10260 2.347 - - 0.806 - - 0.786 - - 0.755 EWS RNA-binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-1600]
68. dla ENSDARG00000010791 9281 2.345 0.830 - - - - - - 0.755 0.760 deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
69. sox19a ENSDARG00000010770, ENSDARG00000110497 4683 2.344 0.768 - 0.797 - - 0.779 - - - SRY (sex determining region Y)-box 19a [Source:ZFIN;Acc:ZDB-GENE-980526-102]
70. parp1 ENSDARG00000019529 6787 2.338 0.709 - 0.830 - - - - - 0.799 poly (ADP-ribose) polymerase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3955]
71. snrpd2 ENSDARG00000040440, ENSDARG00000110285 4301 2.337 0.730 - - - - - - 0.833 0.774 small nuclear ribonucleoprotein D2 polypeptide [Source:ZFIN;Acc:ZDB-GENE-040914-10]
72. prmt1 ENSDARG00000010246 11311 2.336 0.819 - 0.792 - - 0.725 - - - protein arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-693]
73. ncapd2 ENSDARG00000005058 2819 2.336 - 0.788 0.757 - - - - - 0.791 non-SMC condensin I complex, subunit D2 [Source:ZFIN;Acc:ZDB-GENE-050506-59]
74. msi1 ENSDARG00000010710 2634 2.33 0.760 - 0.808 - - 0.762 - - - musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]
75. ilf2 ENSDARG00000014591 14543 2.328 0.720 - 0.782 - - - - - 0.826 interleukin enhancer binding factor 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2345]
76. TAF15 ENSDARG00000070019 5102 2.323 - - 0.771 - - 0.713 - - 0.839 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-061215-102]
77. AGO1 ENSDARG00000092644 4521 2.321 0.824 - 0.740 - - 0.757 - - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
78. hmgb2b ENSDARG00000053990 11519 2.32 0.748 - - - - - - 0.745 0.827 high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]
79. CABZ01070258.1 ENSDARG00000105687 3643 2.311 0.757 - 0.716 0.838 - - - - -
80. sept5a ENSDARG00000013843 1206 2.306 0.737 - - 0.805 - 0.764 - - - septin 5a [Source:ZFIN;Acc:ZDB-GENE-030131-7868]
81. stmn1a ENSDARG00000004169 21169 2.304 0.809 - 0.751 - - - - - 0.744 stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
82. psmd14 ENSDARG00000063100 15711 2.303 0.726 0.860 - - - 0.717 - - - proteasome 26S subunit, non-ATPase 14 [Source:ZFIN;Acc:ZDB-GENE-070410-56]
83. basp1 ENSDARG00000053358, ENSDARG00000110677 2590 2.298 0.733 - - - - 0.777 - 0.788 - brain abundant, membrane attached signal protein 1 [Source:ZFIN;Acc:ZDB-GENE-070424-158]
84. snrpd3l ENSDARG00000076283 7655 2.298 0.763 - - - - 0.707 - - 0.828 small nuclear ribonucleoprotein D3 polypeptide, like [Source:ZFIN;Acc:ZDB-GENE-030131-5219]
85. arpp19b ENSDARG00000039880 4823 2.295 - - - 0.829 - - - 0.727 0.739 cAMP-regulated phosphoprotein 19b [Source:ZFIN;Acc:ZDB-GENE-040426-930]
86. nova2 ENSDARG00000017673 7685 2.291 0.809 - - - - 0.774 - - 0.708 neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
87. zeb2a ENSDARG00000062338, ENSDARG00000111349, ENSDARG00000115964 6087 2.289 0.808 - - - - 0.753 - 0.728 - zinc finger E-box binding homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-070912-553]
88. sf1 ENSDARG00000008188 5142 2.288 - - - - - 0.789 - 0.725 0.774 splicing factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2492]
89. gap43 ENSDARG00000099744 4114 2.281 0.720 - - - - 0.791 - - 0.770 growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
90. fzd3a ENSDARG00000021664 1958 2.278 0.772 - 0.774 - - - - - 0.732 frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
91. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 2.276 - - - - - 0.761 - 0.744 0.771 POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
92. pax6a ENSDARG00000103379 3061 2.272 0.707 - - 0.811 - 0.754 - - - paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
93. nrarpb ENSDARG00000018958 6225 2.272 0.741 - - - - 0.786 - - 0.745 NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
94. igsf9a ENSDARG00000075864 1870 2.269 0.705 0.783 - - - 0.781 - - - immunoglobulin superfamily, member 9a [Source:ZFIN;Acc:ZDB-GENE-060503-288]
95. dpf2l ENSDARG00000037291, ENSDARG00000112198 2353 2.269 - - 0.727 - - - - 0.770 0.772 D4, zinc and double PHD fingers family 2, like [Source:ZFIN;Acc:ZDB-GENE-030131-5132]
96. si:ch73-21g5.7 ENSDARG00000093156 9412 2.262 0.806 - 0.721 - - 0.735 - - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
97. arnt2 ENSDARG00000103697 5731 2.261 - - 0.777 - - 0.781 - - 0.703 aryl-hydrocarbon receptor nuclear translocator 2 [Source:ZFIN;Acc:ZDB-GENE-001207-3]
98. rtca ENSDARG00000002215 3558 2.255 - - 0.745 - - 0.732 - - 0.778 RNA 3'-terminal phosphate cyclase [Source:ZFIN;Acc:ZDB-GENE-030131-9687]
99. prp19 prp19 4804 2.251 - - 0.722 - - 0.743 - 0.786 -
100. mcm4 ENSDARG00000040041 7971 2.245 0.736 - - 0.758 - - - - 0.751 minichromosome maintenance complex component 4 [Source:ZFIN;Acc:ZDB-GENE-030131-9544]

There are 1612 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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