Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for h3f3b.1_1

Gene Name Gene ID Reads Annotation
h3f3b.1_1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 26947 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]










Genes with expression patterns similar to h3f3b.1_1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. h3f3b.1_1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 26947 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
2. ywhaba ENSDARG00000013078 42000 2.366 - - - 0.743 - 0.755 - - 0.868 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide a [Source:ZFIN;Acc:ZDB-GENE-030131-6583]
3. akirin2 ENSDARG00000058729 13245 2.297 - - - - 0.750 - 0.804 - 0.743 akirin 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2944]
4. usp7 ENSDARG00000073710 7017 2.284 - - - - 0.742 - 0.800 0.742 - ubiquitin specific peptidase 7 (herpes virus-associated) [Source:ZFIN;Acc:ZDB-GENE-030131-3656]
5. khsrp ENSDARG00000026489 15738 2.231 0.732 - - - - - 0.785 0.714 - KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
6. HNRNPA2B1 HNRNPA2B1 14997 1.83 - - - - - 0.981 0.849 - -
7. rrm1 ENSDARG00000014017 7296 1.828 - - - - - 0.978 0.850 - - ribonucleotide reductase M1 polypeptide [Source:ZFIN;Acc:ZDB-GENE-990415-247]
8. sumo1 ENSDARG00000044267 4242 1.797 - - - - - 0.980 0.817 - - small ubiquitin-like modifier 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2186]
9. cercam ENSDARG00000079049, ENSDARG00000109573 2228 1.795 - - - - - 0.973 0.822 - - cerebral endothelial cell adhesion molecule [Source:ZFIN;Acc:ZDB-GENE-030131-9787]
10. lman2 ENSDARG00000061854 6251 1.787 - - - - - 0.972 0.815 - - lectin, mannose-binding 2 [Source:ZFIN;Acc:ZDB-GENE-070209-149]
11. si:dkey-9i23.11 si:dkey-9i23.11 3818 1.763 - - - - - 0.975 0.788 - -
12. srsf11 ENSDARG00000098574 12801 1.753 - - - - - 0.978 0.775 - - serine/arginine-rich splicing factor 11 [Source:ZFIN;Acc:ZDB-GENE-030131-605]
13. fos fos 817 1.752 - - - - - 0.973 0.779 - -
14. map1lc3b ENSDARG00000101127 3958 1.749 - - - - - 0.979 0.770 - - microtubule-associated protein 1 light chain 3 beta [Source:ZFIN;Acc:ZDB-GENE-030131-1145]
15. C19H18orf21_1 C19H18orf21_1 1657 1.737 - - - - - 0.969 0.768 - -
16. ndufa2 ENSDARG00000021984 4754 1.734 - - - - - 0.979 0.755 - - NADH:ubiquinone oxidoreductase subunit A2 [Source:ZFIN;Acc:ZDB-GENE-050522-377]
17. GOLM1 GOLM1 1845 1.733 - - - - - 0.972 0.761 - -
18. ap3d1 ENSDARG00000071424, ENSDARG00000114974 5373 1.732 - - - - - 0.971 0.761 - - adaptor related protein complex 3 subunit delta 1 [Source:ZFIN;Acc:ZDB-GENE-050208-437]
19. ptgesl ENSDARG00000068415, ENSDARG00000110236 1718 1.729 - - - - - 0.970 - 0.759 - prostaglandin E synthase 2-like [Source:ZFIN;Acc:ZDB-GENE-040426-1063]
20. ptp4a1 ENSDARG00000006242 10267 1.723 - - - - - 0.974 0.749 - - protein tyrosine phosphatase type IVA, member 1 [Source:ZFIN;Acc:ZDB-GENE-041121-11]
21. baz1b ENSDARG00000102832, ENSDARG00000114866 3543 1.719 - - - - - 0.970 - 0.749 - bromodomain adjacent to zinc finger domain, 1B [Source:ZFIN;Acc:ZDB-GENE-010328-16]
22. kpnb1 ENSDARG00000104889 9282 1.713 - - - - - 0.979 - 0.734 - karyopherin (importin) beta 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2579]
23. eif3f ENSDARG00000077533 24387 1.712 - - - - - 0.970 0.742 - - eukaryotic translation initiation factor 3, subunit F [Source:ZFIN;Acc:ZDB-GENE-100215-2]
24. ube2l3a ENSDARG00000110975, ENSDARG00000112087 2899 1.71 - - - - - 0.966 0.744 - - ubiquitin-conjugating enzyme E2L 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2977]
25. ndufa12 ENSDARG00000042469, ENSDARG00000116793 3843 1.707 - - - - - 0.985 0.722 - - NADH:ubiquinone oxidoreductase subunit A12 [Source:ZFIN;Acc:ZDB-GENE-050828-1]
26. mtss1l mtss1l 2494 1.707 - - - - - 0.976 - 0.731 -
27. tmx2b ENSDARG00000007786 3151 1.701 - - - - - 0.977 0.724 - - thioredoxin-related transmembrane protein 2b [Source:ZFIN;Acc:ZDB-GENE-040625-105]
28. tmed9 ENSDARG00000004261 10013 1.7 - - - - - 0.972 0.728 - - transmembrane p24 trafficking protein 9 [Source:ZFIN;Acc:ZDB-GENE-050417-434]
29. sdhb ENSDARG00000075768 5493 1.7 - - - - - 0.974 0.726 - - succinate dehydrogenase complex, subunit B, iron sulfur (Ip) [Source:ZFIN;Acc:ZDB-GENE-030131-8005]
30. si:dkeyp-44a8.2 ENSDARG00000092493 8308 1.697 - - - - - 0.988 0.709 - - si:dkeyp-44a8.2 [Source:ZFIN;Acc:ZDB-GENE-070705-542]
31. uchl5 ENSDARG00000103404, ENSDARG00000110434 4029 1.694 - - - - - - 0.908 0.786 - ubiquitin carboxyl-terminal hydrolase L5 [Source:ZFIN;Acc:ZDB-GENE-040426-2051]
32. ZNF70_2 ZNF70_2 1866 1.687 - - - - - 0.966 - 0.721 -
33. perp ENSDARG00000063572 6423 1.656 - - - - - 0.928 0.728 - - PERP, TP53 apoptosis effector [Source:ZFIN;Acc:ZDB-GENE-050104-1]
34. pfn2l ENSDARG00000012682 21690 1.645 - 0.812 - - - - 0.833 - - profilin 2 like [Source:ZFIN;Acc:ZDB-GENE-030131-34]
35. srsf4 ENSDARG00000105293 9657 1.624 0.728 - - - - - 0.896 - - serine/arginine-rich splicing factor 4 [Source:ZFIN;Acc:ZDB-GENE-030131-591]
36. vgll4b ENSDARG00000103730 5266 1.619 - - - - - - 0.855 0.764 - vestigial-like family member 4b [Source:ZFIN;Acc:ZDB-GENE-040426-2445]
37. gdi2 ENSDARG00000005451, ENSDARG00000113039 11258 1.619 - - - 0.706 - - 0.913 - - GDP dissociation inhibitor 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2485]
38. snrpd2 ENSDARG00000040440, ENSDARG00000110285 4301 1.618 - - - - - - 0.893 0.725 - small nuclear ribonucleoprotein D2 polypeptide [Source:ZFIN;Acc:ZDB-GENE-040914-10]
39. psma2 ENSDARG00000040121 2504 1.609 0.700 - - - - - 0.909 - - proteasome subunit alpha 2 [Source:ZFIN;Acc:ZDB-GENE-050522-479]
40. ppp2r1a ppp2r1a 11291 1.604 - - - 0.711 - - 0.893 - -
41. ppig ENSDARG00000044431 3427 1.59 - - - - - - 0.852 0.738 - peptidylprolyl isomerase G (cyclophilin G) [Source:ZFIN;Acc:ZDB-GENE-040426-2822]
42. anp32a ENSDARG00000006487 28249 1.587 0.755 - - - - - 0.832 - - acidic (leucine-rich) nuclear phosphoprotein 32 family, member A [Source:ZFIN;Acc:ZDB-GENE-030131-7850]
43. tmed7 ENSDARG00000046022 2435 1.58 - - - - - - 0.844 0.736 - transmembrane p24 trafficking protein 7 [Source:ZFIN;Acc:ZDB-GENE-040426-2570]
44. huwe1 ENSDARG00000016782 6493 1.571 - - - - - - 0.769 0.802 - HECT, UBA and WWE domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-081104-387]
45. atad2b ENSDARG00000060537 3050 1.57 - - - - - - 0.780 0.790 - ATPase family, AAA domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-110411-210]
46. MKI67 ENSDARG00000091150 11038 1.553 0.784 - - - - - 0.769 - - marker of proliferation Ki-67 [Source:ZFIN;Acc:ZDB-GENE-030131-9771]
47. HNRNPAB HNRNPAB 22267 1.546 0.706 - - - - - 0.840 - -
48. taf9 ENSDARG00000077870 6992 1.543 0.755 - - - - - 0.788 - - TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-030131-204]
49. prp19 prp19 4804 1.543 - - - - - - 0.772 0.771 -
50. sumo3a ENSDARG00000028119 13447 1.533 - - - - 0.780 - 0.753 - - small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
51. nhp2 ENSDARG00000069422 9925 1.529 - - - - 0.728 - 0.801 - - NHP2 ribonucleoprotein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-533]
52. ACVR1B ACVR1B 4824 1.524 - - - - - - 0.728 0.796 -
53. eif3i ENSDARG00000017445 21149 1.516 - - - - - 0.722 0.794 - - eukaryotic translation initiation factor 3, subunit I [Source:ZFIN;Acc:ZDB-GENE-040426-1922]
54. fdx1 ENSDARG00000056410, ENSDARG00000115831 3463 1.506 - - - - - - 0.795 0.711 - ferredoxin 1 [Source:ZFIN;Acc:ZDB-GENE-071015-2]
55. bag6 ENSDARG00000075892 3782 1.503 - - - 0.704 - - 0.799 - - BCL2 associated athanogene 6 [Source:ZFIN;Acc:ZDB-GENE-010501-5]
56. rps28 ENSDARG00000035860 34765 1.502 - - - - - 0.730 0.772 - - ribosomal protein S28 [Source:ZFIN;Acc:ZDB-GENE-030131-2022]
57. smc1al ENSDARG00000058203 8838 1.502 0.709 - - - - - 0.793 - - structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]
58. psmc2 ENSDARG00000020101 8095 1.496 - - - - - - 0.782 0.714 - proteasome 26S subunit, ATPase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1327]
59. bckdha ENSDARG00000040555, ENSDARG00000111762 7620 1.492 - - - - - - 0.752 0.740 - branched chain keto acid dehydrogenase E1, alpha polypeptide [Source:ZFIN;Acc:ZDB-GENE-050522-376]
60. wu:fk48d07 wu:fk48d07 13245 1.489 0.712 - - - - - - 0.777 -
61. usp10 ENSDARG00000103422 4247 1.486 - - - 0.704 - - 0.782 - - ubiquitin specific peptidase 10 [Source:ZFIN;Acc:ZDB-GENE-030219-132]
62. arpp19b ENSDARG00000039880 4823 1.485 - - - - - - 0.719 0.766 - cAMP-regulated phosphoprotein 19b [Source:ZFIN;Acc:ZDB-GENE-040426-930]
63. hdac1 ENSDARG00000015427 19804 1.485 0.733 - - - - - - 0.752 - histone deacetylase 1 [Source:ZFIN;Acc:ZDB-GENE-020419-32]
64. cox6b2 ENSDARG00000037860 33134 1.484 0.747 - - - - - 0.737 - - cytochrome c oxidase subunit 6B2 [Source:ZFIN;Acc:ZDB-GENE-040426-1566]
65. golga7 ENSDARG00000057676 4691 1.472 - - - - - - 0.764 0.708 - golgin A7 [Source:ZFIN;Acc:ZDB-GENE-040625-142]
66. rbm4.3 ENSDARG00000022129 28571 1.47 0.705 - - - - - - - 0.765 RNA binding motif protein 4.3 [Source:ZFIN;Acc:ZDB-GENE-040426-1938]
67. gle1 ENSDARG00000043559 1362 1.468 - - - - - - 0.747 0.721 - GLE1 RNA export mediator homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040831-4]
68. bzw1a ENSDARG00000010481 28451 1.468 0.760 - - - - - - 0.708 - basic leucine zipper and W2 domains 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3951]
69. marcksl1b ENSDARG00000035715 37390 1.467 - - - 0.746 - - - - 0.721 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
70. csnk1da ENSDARG00000008370 3469 1.467 - - - - - - 0.708 0.759 - casein kinase 1, delta a [Source:ZFIN;Acc:ZDB-GENE-030131-825]
71. aurka ENSDARG00000012485 3304 1.463 - - - 0.723 - - - 0.740 - aurora kinase A [Source:ZFIN;Acc:ZDB-GENE-040801-161]
72. tubb4b ENSDARG00000002344 30333 1.454 0.715 - - - 0.739 - - - - tubulin, beta 4B class IVb [Source:ZFIN;Acc:ZDB-GENE-030131-8625]
73. eif4h ENSDARG00000042252 6742 1.454 - - - - - - 0.709 0.745 - eukaryotic translation initiation factor 4h [Source:ZFIN;Acc:ZDB-GENE-010328-19]
74. ep300b ENSDARG00000061108 5173 1.446 - - - - - - 0.729 0.717 - E1A binding protein p300 b [Source:ZFIN;Acc:ZDB-GENE-080403-15]
75. kpnb3 ENSDARG00000040245 7967 1.445 - - - - 0.738 - 0.707 - - karyopherin (importin) beta 3 [Source:ZFIN;Acc:ZDB-GENE-030424-2]
76. nr2f2 ENSDARG00000040926 5213 1.444 0.712 - - - - - 0.732 - - nuclear receptor subfamily 2, group F, member 2 [Source:ZFIN;Acc:ZDB-GENE-990415-252]
77. sec23b ENSDARG00000019360 6210 1.435 - - - - - 0.729 - 0.706 - Sec23 homolog B, COPII coat complex component [Source:ZFIN;Acc:ZDB-GENE-030131-5479]
78. srrm1 ENSDARG00000001244 4972 1.428 - - - - - - 0.722 0.706 - serine/arginine repetitive matrix 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2789]
79. tra2a ENSDARG00000007863 4449 1.413 - - - - - - 0.705 0.708 - transformer 2 alpha homolog [Source:ZFIN;Acc:ZDB-GENE-040426-1391]
80. ercc1 ENSDARG00000031680 900 1.411 - - - - - - 0.703 0.708 - excision repair cross-complementation group 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2606]
81. si:ch211-114c12.2 ENSDARG00000028542, ENSDARG00000111053 5495 0.984 - - - - - 0.984 - - - si:ch211-114c12.2 [Source:ZFIN;Acc:ZDB-GENE-030131-8522]
82. arf2 arf2 12369 0.984 - - - - - 0.984 - - -
83. syne2b ENSDARG00000053484 9225 0.984 - - - - - 0.984 - - - spectrin repeat containing, nuclear envelope 2b [Source:ZFIN;Acc:ZDB-GENE-071218-5]
84. ywhah ENSDARG00000005560 11079 0.983 - - - - - 0.983 - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide [Source:ZFIN;Acc:ZDB-GENE-040426-2191]
85. hoxb10a ENSDARG00000011579 2135 0.981 - - - - - 0.981 - - - homeobox B10a [Source:ZFIN;Acc:ZDB-GENE-000328-2]
86. thoc2 ENSDARG00000037503 8711 0.981 - - - - - 0.981 - - - THO complex 2 [Source:ZFIN;Acc:ZDB-GENE-030616-54]
87. NDNF ENSDARG00000062936 7287 0.98 - - - - - 0.980 - - - neuron-derived neurotrophic factor [Source:ZFIN;Acc:ZDB-GENE-030131-207]
88. meaf6 ENSDARG00000101216 6865 0.98 - - - - - 0.980 - - - MYST/Esa1-associated factor 6 [Source:ZFIN;Acc:ZDB-GENE-040808-12]
89. cpe ENSDARG00000055874, ENSDARG00000116033 2981 0.979 - - - - - 0.979 - - - carboxypeptidase E [Source:ZFIN;Acc:ZDB-GENE-090313-68]
90. elmo1 ENSDARG00000098753 6966 0.978 - - - - - 0.978 - - - engulfment and cell motility 1 (ced-12 homolog, C. elegans) [Source:ZFIN;Acc:ZDB-GENE-040426-2069]
91. palm1a ENSDARG00000026882, ENSDARG00000115356 3425 0.978 - - - - - 0.978 - - - paralemmin 1a [Source:ZFIN;Acc:ZDB-GENE-050417-409]
92. tcf12 ENSDARG00000004714 7606 0.978 - - - - - 0.978 - - - transcription factor 12 [Source:ZFIN;Acc:ZDB-GENE-040516-11]
93. gnb4b ENSDARG00000115383 7457 0.977 - - - - - 0.977 - - - guanine nucleotide binding protein (G protein), beta polypeptide 4b [Source:ZFIN;Acc:ZDB-GENE-041114-167]
94. kif1b ENSDARG00000037020 2124 0.977 - - - - - 0.977 - - - kinesin family member 1B [Source:ZFIN;Acc:ZDB-GENE-030820-1]
95. ppp1r3cb ENSDARG00000014554 2507 0.977 - - - - - 0.977 - - - protein phosphatase 1, regulatory subunit 3Cb [Source:ZFIN;Acc:ZDB-GENE-040426-1733]
96. prkca ENSDARG00000039241, ENSDARG00000115657 2136 0.977 - - - - - 0.977 - - - protein kinase C, alpha [Source:ZFIN;Acc:ZDB-GENE-050208-100]
97. dars ENSDARG00000070043 6854 0.976 - - - - - 0.976 - - - aspartyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-061110-135]
98. aplp2 ENSDARG00000054864 7958 0.976 - - - - - 0.976 - - - amyloid beta (A4) precursor-like protein 2 [Source:ZFIN;Acc:ZDB-GENE-061009-28]
99. irf2bp2a ENSDARG00000004702 6719 0.976 - - - - - 0.976 - - - interferon regulatory factor 2 binding protein 2a [Source:ZFIN;Acc:ZDB-GENE-030131-7809]
100. PYURF ENSDARG00000045773 4576 0.975 - - - - - 0.975 - - - PIGY upstream reading frame [Source:HGNC Symbol;Acc:HGNC:44317]

There are 1050 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA