Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for h3f3b.1

Gene Name Gene ID Reads Annotation
h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 50840 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]










Genes with expression patterns similar to h3f3b.1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 50840 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
2. h2afy2_1 ENSDARG00000087897 9887 2.465 - 0.863 - - - - 0.719 - 0.883 H2A histone family, member Y2 [Source:ZFIN;Acc:ZDB-GENE-050913-114]
3. hmgb2b ENSDARG00000053990 11519 2.338 - - - - 0.727 0.899 0.712 - - high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]
4. hnrnpa0b ENSDARG00000036162, ENSDARG00000112653 27740 2.329 - - - - 0.842 - 0.755 0.732 - heterogeneous nuclear ribonucleoprotein A0b [Source:ZFIN;Acc:ZDB-GENE-030131-6154]
5. mdka ENSDARG00000036036 23084 2.296 0.747 - 0.740 - - - 0.809 - - midkine a [Source:ZFIN;Acc:ZDB-GENE-990621-1]
6. HNRNPA2B1 HNRNPA2B1 14997 1.742 - - 0.850 - - - - - 0.892
7. camk2g1 ENSDARG00000071395 10456 1.733 - - - - - 0.951 0.782 - - calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma 1 [Source:ZFIN;Acc:ZDB-GENE-050913-146]
8. amd1 ENSDARG00000043856, ENSDARG00000111778 9667 1.732 - - - - - 0.891 - - 0.841 adenosylmethionine decarboxylase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-760]
9. fras1 ENSDARG00000054619, ENSDARG00000114204 4459 1.722 - 0.860 0.862 - - - - - - Fraser extracellular matrix complex subunit 1 [Source:ZFIN;Acc:ZDB-GENE-060526-68]
10. txnipa ENSDARG00000036107 8863 1.701 0.786 - - - - 0.915 - - - thioredoxin interacting protein a [Source:ZFIN;Acc:ZDB-GENE-030804-10]
11. tmeff1b ENSDARG00000056740 11253 1.698 0.810 - 0.888 - - - - - - transmembrane protein with EGF-like and two follistatin-like domains 1b [Source:ZFIN;Acc:ZDB-GENE-050706-143]
12. pdlim5b ENSDARG00000027600 4252 1.674 0.787 - - - - 0.887 - - - PDZ and LIM domain 5b [Source:ZFIN;Acc:ZDB-GENE-040426-908]
13. vac14 ENSDARG00000014303 941 1.671 0.805 - - - - 0.866 - - - vac14 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040912-82]
14. pabpc1a ENSDARG00000017219 95045 1.665 - - - - - - 0.723 - 0.942 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
15. TUBA1A ENSDARG00000001889 25294 1.664 - - - 0.741 - - - - 0.923 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
16. rpl31 ENSDARG00000053365 55475 1.661 - - 0.780 - - - - - 0.881 ribosomal protein L31 [Source:ZFIN;Acc:ZDB-GENE-060331-121]
17. ndufv2 ENSDARG00000013044 3758 1.656 0.802 - - - - 0.854 - - - NADH:ubiquinone oxidoreductase core subunit V2 [Source:ZFIN;Acc:ZDB-GENE-040426-1713]
18. sf3b4 ENSDARG00000018574 7470 1.653 0.789 - - - - 0.864 - - - splicing factor 3b, subunit 4 [Source:ZFIN;Acc:ZDB-GENE-020419-22]
19. rbfox2 ENSDARG00000052182 6621 1.643 - - - 0.766 - 0.877 - - - RNA binding fox-1 homolog 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2464]
20. mpi ENSDARG00000030786 3052 1.642 0.785 - - - - 0.857 - - - mannose phosphate isomerase [Source:ZFIN;Acc:ZDB-GENE-050904-6]
21. snx12 ENSDARG00000019060 9563 1.636 - - - - - 0.885 0.751 - - sorting nexin 12 [Source:ZFIN;Acc:ZDB-GENE-040426-787]
22. uqcrc2a ENSDARG00000014794 3949 1.635 0.799 - - - - - - - 0.836 ubiquinol-cytochrome c reductase core protein 2a [Source:ZFIN;Acc:ZDB-GENE-040718-405]
23. tia1l ENSDARG00000026476, ENSDARG00000109827 9378 1.632 - - - 0.740 - 0.892 - - - cytotoxic granule-associated RNA binding protein 1, like [Source:ZFIN;Acc:ZDB-GENE-030131-2167]
24. itgb1b.1 ENSDARG00000053232 4721 1.626 0.763 - 0.863 - - - - - - integrin, beta 1b.1 [Source:ZFIN;Acc:ZDB-GENE-060803-3]
25. stag2b ENSDARG00000053668, ENSDARG00000109728 7193 1.625 - - 0.886 - - - 0.739 - - stromal antigen 2b [Source:ZFIN;Acc:ZDB-GENE-030131-2785]
26. cyb5a ENSDARG00000098589 9430 1.617 - - - - - 0.864 0.753 - - cytochrome b5 type A (microsomal) [Source:ZFIN;Acc:ZDB-GENE-040426-2148]
27. rps17 ENSDARG00000104011 27028 1.617 - - - - - 0.856 0.761 - - ribosomal protein S17 [Source:ZFIN;Acc:ZDB-GENE-040426-1852]
28. gdi2 ENSDARG00000005451, ENSDARG00000113039 11258 1.612 0.852 - - - - - 0.760 - - GDP dissociation inhibitor 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2485]
29. dhx15 ENSDARG00000015392 7496 1.609 0.826 - - 0.783 - - - - - DEAH (Asp-Glu-Ala-His) box helicase 15 [Source:ZFIN;Acc:ZDB-GENE-030131-650]
30. hypk ENSDARG00000059725 20584 1.596 0.755 - - - - 0.841 - - - huntingtin interacting protein K [Source:ZFIN;Acc:ZDB-GENE-080515-6]
31. cbx5 ENSDARG00000061187 24026 1.595 - - 0.866 - - - 0.729 - - chromobox homolog 5 (HP1 alpha homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-5553]
32. ywhaba ENSDARG00000013078 42000 1.592 0.832 - - 0.760 - - - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide a [Source:ZFIN;Acc:ZDB-GENE-030131-6583]
33. rab2a ENSDARG00000020261 24540 1.591 - - 0.701 - - - - - 0.890 RAB2A, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-011212-2]
34. rps3a ENSDARG00000035692, ENSDARG00000114628, ENSDARG00000115378 61276 1.582 0.745 - - - - - - - 0.837 ribosomal protein S3A [Source:ZFIN;Acc:ZDB-GENE-030131-9184]
35. lsm14aa ENSDARG00000006600 2298 1.581 - - 0.875 - - - 0.706 - - LSM14A mRNA processing body assembly factor a [Source:ZFIN;Acc:ZDB-GENE-040426-1567]
36. eif2s3 ENSDARG00000008292 17051 1.579 - - 0.801 - - - 0.778 - - eukaryotic translation initiation factor 2, subunit 3 gamma [Source:ZFIN;Acc:ZDB-GENE-030131-5552]
37. rpl5b ENSDARG00000015862, ENSDARG00000109661 79810 1.579 - - - - - 0.826 0.753 - - ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
38. zgc:63637 zgc:63637 3636 1.578 - - 0.705 - - 0.873 - - -
39. postnb ENSDARG00000104267 28076 1.576 0.756 - - - - - - - 0.820 periostin, osteoblast specific factor b [Source:ZFIN;Acc:ZDB-GENE-030131-9120]
40. ahnak ENSDARG00000061764 25962 1.573 0.790 - 0.783 - - - - - - AHNAK nucleoprotein [Source:ZFIN;Acc:ZDB-GENE-030131-8719]
41. arf1l arf1l 9119 1.567 - - - - - 0.833 0.734 - -
42. si:ch1073-429i10.3 75111 1.565 - - - 0.825 - - - 0.740 - si:ch1073-429i10.3, transcript variant X2
43. spcs2 ENSDARG00000042823 10032 1.561 - 0.860 - - - - 0.701 - - signal peptidase complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-050320-32]
44. calm2a ENSDARG00000031427, ENSDARG00000111871 43643 1.559 - - - 0.817 - - - 0.742 - calmodulin 2a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030804-3]
45. fkbp14 ENSDARG00000040695 7725 1.557 - - - - - 0.821 0.736 - - FK506 binding protein 14 [Source:ZFIN;Acc:ZDB-GENE-040801-210]
46. h3f3d ENSDARG00000045248 43757 1.551 - - - 0.777 - - - 0.774 - H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
47. histh1l ENSDARG00000035519 12293 1.543 0.805 - - - - - 0.738 - - histone H1 like [Source:ZFIN;Acc:ZDB-GENE-050417-145]
48. actc1a ENSDARG00000042535, ENSDARG00000076126, ENSDARG00000116925 6499 1.537 0.801 - - - - 0.736 - - - actin, alpha, cardiac muscle 1a [Source:ZFIN;Acc:ZDB-GENE-040520-4]
49. ubc ENSDARG00000102632 36050 1.53 0.791 - - 0.739 - - - - - ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
50. marcksb ENSDARG00000008803 42949 1.529 0.817 - - - 0.712 - - - - myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
51. Sep-02 Sep-02 10074 1.519 0.815 - - - - - 0.704 - -
52. h2afva ENSDARG00000068820 16427 1.516 0.813 - - - - - - 0.703 - H2A histone family, member Va [Source:ZFIN;Acc:ZDB-GENE-020717-1]
53. hspb8 ENSDARG00000058365, ENSDARG00000109236 8688 1.515 0.784 - 0.731 - - - - - - heat shock protein b8 [Source:ZFIN;Acc:ZDB-GENE-030131-2480]
54. tmem35 ENSDARG00000052567 5685 1.508 - - 0.792 0.716 - - - - - transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
55. pafah1b3 ENSDARG00000058047, ENSDARG00000105336, ENSDARG00000116495 8019 1.506 - - 0.779 - - - 0.727 - - platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit [Source:ZFIN;Acc:ZDB-GENE-040426-1026]
56. mlf2 ENSDARG00000034616, ENSDARG00000110660 14039 1.502 - - 0.778 - - - 0.724 - - myeloid leukemia factor 2 [Source:ZFIN;Acc:ZDB-GENE-050913-67]
57. ywhabl ENSDARG00000040287 39045 1.489 - - - - - - 0.730 0.759 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide like [Source:ZFIN;Acc:ZDB-GENE-030131-448]
58. gng5 ENSDARG00000039830 12102 1.473 - - - - - - 0.734 0.739 - guanine nucleotide binding protein (G protein), gamma 5 [Source:ZFIN;Acc:ZDB-GENE-030131-9966]
59. ndufa1 ENSDARG00000036329, ENSDARG00000111888 18361 1.462 0.740 - - - - - 0.722 - - NADH:ubiquinone oxidoreductase subunit A1 [Source:ZFIN;Acc:ZDB-GENE-040625-168]
60. fbxo28 ENSDARG00000027159 9602 1.461 0.715 - - - - - 0.746 - - F-box protein 28 [Source:ZFIN;Acc:ZDB-GENE-030131-4665]
61. cdca8 ENSDARG00000043137 7541 1.443 - - - 0.703 - - 0.740 - - cell division cycle associated 8 [Source:ZFIN;Acc:ZDB-GENE-041114-171]
62. cdc42 ENSDARG00000044573 11795 0.957 - - - - - 0.957 - - - cell division cycle 42 [Source:ZFIN;Acc:ZDB-GENE-030131-8783]
63. tceb2 10382 0.951 - - - - - 0.951 - - - transcription elongation factor B (SIII), polypeptide 2
64. HIST1H4C HIST1H4C 6190 0.934 - 0.934 - - - - - - -
65. marcksl1a ENSDARG00000039034 37303 0.932 - - - - - 0.932 - - - MARCKS-like 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2146]
66. zgc:92061 zgc:92061 21304 0.925 - 0.925 - - - - - - -
67. psmb4 ENSDARG00000054696 8100 0.919 - - - - - 0.919 - - - proteasome subunit beta 4 [Source:ZFIN;Acc:ZDB-GENE-050417-333]
68. bckdha ENSDARG00000040555, ENSDARG00000111762 7620 0.918 - - - - - 0.918 - - - branched chain keto acid dehydrogenase E1, alpha polypeptide [Source:ZFIN;Acc:ZDB-GENE-050522-376]
69. mapre1b ENSDARG00000002659 9119 0.915 - - 0.915 - - - - - - microtubule-associated protein, RP/EB family, member 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2256]
70. top1l ENSDARG00000070545 40529 0.915 - - - - - 0.915 - - - DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
71. nucks1a ENSDARG00000078473 28285 0.914 - - - - - - - - 0.914 nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
72. mapk3 ENSDARG00000070573 6842 0.91 - - - - - 0.910 - - - mitogen-activated protein kinase 3 [Source:ZFIN;Acc:ZDB-GENE-040121-1]
73. txn2 ENSDARG00000034777 4071 0.909 - - - - - 0.909 - - - thioredoxin 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1795]
74. wu:fc51f04 wu:fc51f04 7074 0.908 - - - - - 0.908 - - -
75. sepw2a 8597 0.908 - 0.908 - - - - - - - selenoprotein W, 2a
76. supt16h ENSDARG00000079949 4755 0.905 - - 0.905 - - - - - - SPT16 homolog, facilitates chromatin remodeling subunit [Source:ZFIN;Acc:ZDB-GENE-031118-96]
77. ube2v1 ENSDARG00000041875 5739 0.905 - - - - - 0.905 - - - ubiquitin-conjugating enzyme E2 variant 1 [Source:ZFIN;Acc:ZDB-GENE-051030-102]
78. chmp4b chmp4b 5318 0.904 - 0.904 - - - - - - -
79. gcn1l1 gcn1l1 6031 0.904 - - - - - 0.904 - - -
80. ndufa11 ENSDARG00000042777 2757 0.901 - - - - - 0.901 - - - NADH:ubiquinone oxidoreductase subunit A11 [Source:ZFIN;Acc:ZDB-GENE-040426-1631]
81. fam32al fam32al 5716 0.9 - - - - - 0.900 - - -
82. phb ENSDARG00000057414 9551 0.9 - - - - - 0.900 - - - prohibitin [Source:ZFIN;Acc:ZDB-GENE-030131-6577]
83. si:ch211-160e1.5 5586 0.899 - - - - - 0.899 - - - si:ch211-160e1.5
84. plxnb1b ENSDARG00000017211 4676 0.899 - - 0.899 - - - - - - plexin b1b [Source:ZFIN;Acc:ZDB-GENE-090812-4]
85. plcd1b ENSDARG00000034080 4074 0.898 - - - - - 0.898 - - - phospholipase C, delta 1b [Source:ZFIN;Acc:ZDB-GENE-030131-9435]
86. dip2a ENSDARG00000078058 1625 0.898 - 0.898 - - - - - - - disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
87. cdh2 ENSDARG00000018693, ENSDARG00000117201 9869 0.896 - - - - - 0.896 - - - cadherin 2, type 1, N-cadherin (neuronal) [Source:ZFIN;Acc:ZDB-GENE-990415-171]
88. creb1a ENSDARG00000053586 5068 0.896 - - 0.896 - - - - - - cAMP responsive element binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-040426-750]
89. khdrbs1b ENSDARG00000070475 18157 0.896 - - - - - 0.896 - - - KH domain containing, RNA binding, signal transduction associated 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2344]
90. si:dkey-11e23.5 si:dkey-11e23.5 3464 0.896 - - - - - 0.896 - - -
91. ide ENSDARG00000075570 4331 0.895 - - - - - 0.895 - - - insulin-degrading enzyme [Source:ZFIN;Acc:ZDB-GENE-070410-85]
92. akr1b1 ENSDARG00000006215 2511 0.893 - - - - - 0.893 - - - aldo-keto reductase family 1, member B1 (aldose reductase) [Source:ZFIN;Acc:ZDB-GENE-040625-7]
93. wdr5 ENSDARG00000016903 4834 0.893 - - - - - 0.893 - - - WD repeat domain 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2082]
94. BX324201.1 BX324201.1 3302 0.893 - - - - - 0.893 - - -
95. sec23a ENSDARG00000104230 3910 0.892 - - 0.892 - - - - - - Sec23 homolog A, COPII coat complex component [Source:ZFIN;Acc:ZDB-GENE-040426-2823]
96. yth2 yth2 3716 0.892 - - 0.892 - - - - - -
97. eif3s10 ENSDARG00000076815 10822 0.891 - - 0.891 - - - - - - eukaryotic translation initiation factor 3, subunit 10 (theta) [Source:ZFIN;Acc:ZDB-GENE-030131-5726]
98. scrt2 ENSDARG00000056175 4331 0.889 - - 0.889 - - - - - - scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
99. ssrp1a ENSDARG00000037397, ENSDARG00000116441 3999 0.888 - - 0.888 - - - - - - structure specific recognition protein 1a [Source:ZFIN;Acc:ZDB-GENE-031118-9]
100. si:dkey-253d23.10 7602 0.888 - - 0.888 - - - - - - si:dkey-253d23.10, transcript variant X4

There are 666 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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