Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for h3f3a

Gene Name Gene ID Reads Annotation
h3f3a 66671 H3 histone, family 3A, transcript variant X1










Genes with expression patterns similar to h3f3a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. h3f3a 66671 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 H3 histone, family 3A, transcript variant X1
2. ptmab ENSDARG00000101766 182812 3.415 0.839 - 0.829 - - - - 0.915 0.832 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
3. HNRNPA2B1 HNRNPA2B1 14997 3.116 0.709 - - - - - 0.962 0.732 0.713
4. ssbp4 ENSDARG00000056483 10196 2.56 0.713 - - - - - 0.936 0.911 - single stranded DNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-469]
5. hnrnpub ENSDARG00000004735 16496 2.446 0.809 - - - - - 0.891 0.746 - heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
6. sumo3a ENSDARG00000028119 13447 2.414 0.723 - - - - - 0.925 0.766 - small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
7. hoxb9a ENSDARG00000056023 11856 2.41 0.783 - - - - 0.773 0.854 - - homeobox B9a [Source:ZFIN;Acc:ZDB-GENE-990415-109]
8. hmgb2b ENSDARG00000053990 11519 2.404 0.771 - - - - - 0.922 0.711 - high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]
9. h2afvb ENSDARG00000116491 35692 2.404 0.761 - - 0.712 - - - 0.931 - H2A histone family, member Vb [Source:ZFIN;Acc:ZDB-GENE-050506-24]
10. ZFHX3 ENSDARG00000103057 7759 2.4 0.835 - - - - - 0.810 0.755 - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
11. snrpc ENSDARG00000009871 9567 2.399 0.740 - - - - - 0.864 0.795 - small nuclear ribonucleoprotein polypeptide C [Source:ZFIN;Acc:ZDB-GENE-020419-26]
12. npm1b ENSDARG00000037675 5448 2.367 0.729 - - - - - 0.835 0.803 - nucleophosmin 1b [Source:ZFIN;Acc:ZDB-GENE-080723-7]
13. si:ch73-21g5.7 ENSDARG00000093156 9412 2.354 0.775 - - - - - 0.721 0.858 - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
14. CABZ01111990.1 CABZ01111990.1 4374 2.346 0.775 - - - - - 0.751 0.820 -
15. cnrip1a ENSDARG00000091683 1491 2.346 0.796 - - - - - 0.713 0.837 - cannabinoid receptor interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-126]
16. hmgb1b ENSDARG00000030479 10398 2.338 0.730 - - - - - 0.869 0.739 - high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]
17. clvs2 ENSDARG00000053122 1390 2.326 0.775 - - - - - 0.701 0.850 - clavesin 2 [Source:ZFIN;Acc:ZDB-GENE-041014-313]
18. khdrbs1a ENSDARG00000052856 53666 2.325 0.789 - - 0.776 - - - 0.760 - KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
19. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 2.317 0.749 - - - - - 0.719 0.849 - leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
20. sox19a ENSDARG00000010770, ENSDARG00000110497 4683 2.281 0.845 - - - - - 0.719 0.717 - SRY (sex determining region Y)-box 19a [Source:ZFIN;Acc:ZDB-GENE-980526-102]
21. anp32a ENSDARG00000006487 28249 2.271 0.771 - - - - - 0.755 0.745 - acidic (leucine-rich) nuclear phosphoprotein 32 family, member A [Source:ZFIN;Acc:ZDB-GENE-030131-7850]
22. tuba1c ENSDARG00000055216 8384 2.268 0.786 - - - - - 0.717 0.765 - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
23. AL954137.2 ENSDARG00000114408 104506 2.252 - - - - 0.755 0.747 - 0.750 -
24. hnrnpab hnrnpab 72354 2.246 0.789 - - - 0.711 - - 0.746 -
25. stmn1b ENSDARG00000033655 9491 2.243 0.753 - - - - - 0.739 0.751 - stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
26. fam219ab ENSDARG00000013813 591 2.241 0.705 - - - - - 0.748 0.788 - family with sequence similarity 219, member Ab [Source:ZFIN;Acc:ZDB-GENE-050522-213]
27. pdzd11 ENSDARG00000053194, ENSDARG00000116591 1858 2.234 0.727 - - - - - 0.703 0.804 - PDZ domain containing 11 [Source:ZFIN;Acc:ZDB-GENE-040426-2544]
28. tmem35 ENSDARG00000052567 5685 2.228 0.735 - - - - - 0.727 0.766 - transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
29. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 2.217 0.762 - - - - - 0.707 0.748 - cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
30. sox21b ENSDARG00000008540 1460 2.213 0.729 - - - - - 0.711 0.773 - SRY (sex determining region Y)-box 21b [Source:ZFIN;Acc:ZDB-GENE-040429-1]
31. gap43 ENSDARG00000099744 4114 2.206 0.708 - - - - - 0.727 0.771 - growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
32. top1l ENSDARG00000070545 40529 1.781 - - - - - - 0.919 0.862 - DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
33. khsrp ENSDARG00000026489 15738 1.774 0.840 - - - - - 0.934 - - KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
34. snrpe ENSDARG00000033175 7462 1.763 - - - - - - 0.863 0.900 - small nuclear ribonucleoprotein polypeptide E [Source:ZFIN;Acc:ZDB-GENE-040426-1112]
35. pbx4 ENSDARG00000052150 35676 1.761 0.852 - - - - - 0.909 - - pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
36. mta2 ENSDARG00000013031 2932 1.749 - - - - - - 0.869 0.880 - metastasis associated 1 family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4803]
37. srsf3a ENSDARG00000025397, ENSDARG00000100815 11622 1.74 - - - - - - 0.907 0.833 - serine/arginine-rich splicing factor 3a [Source:ZFIN;Acc:ZDB-GENE-030616-631]
38. HNRNPAB HNRNPAB 22267 1.739 0.791 - - - - - 0.948 - -
39. ilf3b ENSDARG00000105177 9473 1.73 - - - - - - 0.841 0.889 - interleukin enhancer binding factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-587]
40. cfl1 ENSDARG00000021124 78399 1.725 - - - - - - 0.832 0.893 - cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
41. prmt1 ENSDARG00000010246 11311 1.721 - - - - 0.865 - 0.856 - - protein arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-693]
42. h2afva ENSDARG00000068820 16427 1.72 - - - - - - 0.934 0.786 - H2A histone family, member Va [Source:ZFIN;Acc:ZDB-GENE-020717-1]
43. kdm1a ENSDARG00000060679 6152 1.707 0.788 - - - - - 0.919 - - lysine (K)-specific demethylase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7828]
44. stmn1a ENSDARG00000004169 21169 1.699 0.804 - - - - - 0.895 - - stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
45. tia1 ENSDARG00000052536, ENSDARG00000114478 4392 1.692 - - - - - - 0.806 0.886 - TIA1 cytotoxic granule-associated RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-1506]
46. cntnap2b ENSDARG00000074558, ENSDARG00000109616, ENSDARG00000116850 559 1.685 - - - - - - 0.783 0.902 - contactin associated protein like 2b [Source:NCBI gene;Acc:563345]
47. ewsr1a ENSDARG00000020258, ENSDARG00000113252 11221 1.68 - - - - - - 0.926 0.754 - EWS RNA-binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2317]
48. rrm1 ENSDARG00000014017 7296 1.675 0.817 - - - - - 0.858 - - ribonucleotide reductase M1 polypeptide [Source:ZFIN;Acc:ZDB-GENE-990415-247]
49. bud31 ENSDARG00000017084 3892 1.672 - - - - - - 0.852 0.820 - BUD31 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040720-3]
50. ewsr1b ENSDARG00000020465, ENSDARG00000117011 10260 1.671 - - - - - - 0.863 0.808 - EWS RNA-binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-1600]
51. marcksa ENSDARG00000004049 2518 1.671 - - - - - - 0.786 0.885 - myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
52. zgc:112425 zgc:112425 293873 1.669 - - - 0.739 - - - 0.930 -
53. hmgb3a ENSDARG00000056725 15668 1.669 0.772 - - - - - 0.897 - - high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
54. srsf4 ENSDARG00000105293 9657 1.668 0.830 - - - - - 0.838 - - serine/arginine-rich splicing factor 4 [Source:ZFIN;Acc:ZDB-GENE-030131-591]
55. snrpd3l ENSDARG00000076283 7655 1.667 - 0.818 - - - - 0.849 - - small nuclear ribonucleoprotein D3 polypeptide, like [Source:ZFIN;Acc:ZDB-GENE-030131-5219]
56. smarce1 ENSDARG00000016871 9628 1.665 - - - - - - 0.905 0.760 - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-967]
57. tmpob ENSDARG00000022978 8121 1.659 0.803 - - - - - 0.856 - - thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
58. tma7 ENSDARG00000071670 13372 1.659 - - - - - - 0.795 0.864 - translation machinery associated 7 homolog [Source:ZFIN;Acc:ZDB-GENE-061027-176]
59. akirin2 ENSDARG00000058729 13245 1.657 - - - - - - 0.834 0.823 - akirin 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2944]
60. meaf6 ENSDARG00000101216 6865 1.657 - - - - - - 0.850 0.807 - MYST/Esa1-associated factor 6 [Source:ZFIN;Acc:ZDB-GENE-040808-12]
61. whsc1l1 8544 1.654 - - - - - - 0.878 0.776 - Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant X2
62. zgc:123194 zgc:123194 69174 1.654 0.856 - - - - - - 0.798 -
63. tardbp ENSDARG00000040031, ENSDARG00000115667 13815 1.653 - - - - - - 0.863 0.790 - TAR DNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-3777]
64. tubb4b ENSDARG00000002344 30333 1.644 0.837 - - - - - - 0.807 - tubulin, beta 4B class IVb [Source:ZFIN;Acc:ZDB-GENE-030131-8625]
65. ylpm1 ENSDARG00000043680 7676 1.643 0.793 - - - - - 0.850 - - YLP motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2196]
66. arnt2 ENSDARG00000103697 5731 1.635 - - - - - - 0.818 0.817 - aryl-hydrocarbon receptor nuclear translocator 2 [Source:ZFIN;Acc:ZDB-GENE-001207-3]
67. si:dkeyp-86f7.3 si:dkeyp-86f7.3 92941 1.63 0.894 - - - - - - 0.736 -
68. ubr5 ENSDARG00000018192 9267 1.624 - - - - - - 0.810 0.814 - ubiquitin protein ligase E3 component n-recognin 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6559]
69. dut ENSDARG00000106529 3120 1.623 0.705 - - - - - 0.918 - - deoxyuridine triphosphatase [Source:ZFIN;Acc:ZDB-GENE-041010-93]
70. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 72444 1.623 0.839 - - - - - - 0.784 - heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
71. pcna ENSDARG00000054155 89521 1.62 - - - - 0.798 - - 0.822 - proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
72. ckbb ENSDARG00000043257 3503 1.618 0.790 - - - - - 0.828 - - creatine kinase, brain b [Source:ZFIN;Acc:ZDB-GENE-020103-2]
73. cdk6 ENSDARG00000070228 1778 1.618 - - - - - - 0.837 0.781 - cyclin-dependent kinase 6 [Source:ZFIN;Acc:ZDB-GENE-060503-786]
74. vdac1 ENSDARG00000045132 8051 1.618 0.831 - - - - - 0.787 - - voltage-dependent anion channel 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6514]
75. rbm4.3 ENSDARG00000022129 28571 1.616 0.767 - - - - - - 0.849 - RNA binding motif protein 4.3 [Source:ZFIN;Acc:ZDB-GENE-040426-1938]
76. rpa3 ENSDARG00000002613 2923 1.616 0.776 - - - - - 0.840 - - replication protein A3 [Source:ZFIN;Acc:ZDB-GENE-040426-977]
77. sin3b ENSDARG00000062472 2025 1.613 - - - - - - 0.811 0.802 - SIN3 transcription regulator family member B [Source:ZFIN;Acc:ZDB-GENE-030131-8264]
78. TAF15 ENSDARG00000070019 5102 1.611 - - - - - - 0.766 0.845 - TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-061215-102]
79. hoxa9b ENSDARG00000056819 3081 1.61 0.714 - - - - - 0.896 - - homeobox A9b [Source:ZFIN;Acc:ZDB-GENE-000823-2]
80. fscn1a ENSDARG00000059680 3999 1.608 - - - - - - 0.776 0.832 - fascin actin-bundling protein 1a [Source:ZFIN;Acc:ZDB-GENE-031009-1]
81. acin1a ENSDARG00000054290 14023 1.604 0.702 - - - - - 0.902 - - apoptotic chromatin condensation inducer 1a [Source:ZFIN;Acc:ZDB-GENE-030616-583]
82. mllt11 ENSDARG00000071026 2518 1.6 0.750 - - - - - - 0.850 - MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
83. nucks1a ENSDARG00000078473 28285 1.598 - - - - - - - 0.836 0.762 nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
84. fam60al 2846 1.594 - - - - - - 0.817 0.777 - family with sequence similarity 60, member A, like
85. tle2 5014 1.593 0.718 - - - - - 0.875 - - transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila), transcript variant X4
86. ADAM22 ENSDARG00000060532 2259 1.59 - - - - - - 0.719 0.871 - ADAM metallopeptidase domain 22 [Source:ZFIN;Acc:ZDB-GENE-070810-1]
87. ptbp2b ENSDARG00000015901 2458 1.588 - - - - - - 0.835 0.753 - polypyrimidine tract binding protein 2b [Source:ZFIN;Acc:ZDB-GENE-060810-49]
88. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 1.586 0.741 - - - - - 0.845 - - methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
89. metrn ENSDARG00000030367, ENSDARG00000112407, ENSDARG00000115842 7032 1.584 - - - - 0.757 - 0.827 - - meteorin, glial cell differentiation regulator [Source:ZFIN;Acc:ZDB-GENE-050102-1]
90. cdc34b ENSDARG00000012627 3879 1.582 - - - - - - 0.730 0.852 - cell division cycle 34 homolog (S. cerevisiae) b [Source:ZFIN;Acc:ZDB-GENE-040718-439]
91. lmnb1 ENSDARG00000044299 9817 1.581 - - - - - - 0.818 0.763 - lamin B1 [Source:ZFIN;Acc:ZDB-GENE-020424-2]
92. hsp90ab1 ENSDARG00000029150 102372 1.581 - - - - - - - 0.705 0.876 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
93. cnn3b ENSDARG00000029856 4807 1.579 - - - - - - 0.773 0.806 - calponin 3, acidic b [Source:ZFIN;Acc:ZDB-GENE-050522-263]
94. csdc2a ENSDARG00000041323, ENSDARG00000115932 490 1.579 - - - - - - 0.735 0.844 - cold shock domain containing C2, RNA binding a [Source:ZFIN;Acc:ZDB-GENE-040718-442]
95. mex3b ENSDARG00000058369 1867 1.578 - - - - - - 0.785 0.793 - mex-3 RNA binding family member B [Source:ZFIN;Acc:ZDB-GENE-030131-2628]
96. TUBA1A ENSDARG00000001889 25294 1.574 - - - - - - 0.754 - 0.820 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
97. st18 663 1.571 - - - - - - 0.713 0.858 - suppression of tumorigenicity 18, zinc finger
98. DTX4 ENSDARG00000076302 2642 1.57 - - - - - - 0.781 0.789 - deltex E3 ubiquitin ligase 4 [Source:HGNC Symbol;Acc:HGNC:29151]
99. hn1b hn1b 7325 1.567 0.725 - - - - - 0.842 - -
100. zgc:109889 ENSDARG00000069600, ENSDARG00000113538 554 1.567 - - - - - - 0.731 0.836 - zgc:109889 [Source:ZFIN;Acc:ZDB-GENE-050522-547]

There are 1314 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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