Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for gtf2a1

Gene Name Gene ID Reads Annotation
gtf2a1 ENSDARG00000011000 2026 general transcription factor IIA, 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2694]










Genes with expression patterns similar to gtf2a1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. gtf2a1 ENSDARG00000011000 2026 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 general transcription factor IIA, 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2694]
2. myo1b ENSDARG00000024694 1761 3.07 - 0.731 0.919 - - 0.704 0.716 - - myosin IB [Source:ZFIN;Acc:ZDB-GENE-030131-695]
3. nxf1 ENSDARG00000055076 3251 2.66 0.998 - 0.878 - - 0.784 - - - nuclear RNA export factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2585]
4. gpatch2 1221 2.478 - - 0.917 0.779 - - 0.782 - - G patch domain containing 2, transcript variant X1
5. rqcd1 2301 2.475 - - 0.904 - - 0.762 - - 0.809 RCD1 required for cell differentiation1 homolog (S. pombe)
6. arglu1a ENSDARG00000019223 8716 2.449 0.880 - - - - 0.801 - - 0.768 arginine and glutamate rich 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2914]
7. senp3b ENSDARG00000056741 1296 2.417 - - - - - 0.848 0.785 - 0.784 SUMO specific peptidase 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6714]
8. syt11a ENSDARG00000057913 1145 2.415 - - 0.921 - - 0.755 - 0.739 - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
9. sh3rf1 ENSDARG00000070470 1463 2.39 - - 0.910 - - - 0.729 - 0.751 SH3 domain containing ring finger 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6288]
10. aacs ENSDARG00000012468 1138 2.29 - 0.752 - - - - 0.768 - 0.770 acetoacetyl-CoA synthetase [Source:ZFIN;Acc:ZDB-GENE-040426-903]
11. smarcad1 smarcad1 1457 2.235 - - - 0.755 - - 0.774 0.706 -
12. hoxb1b ENSDARG00000054033, ENSDARG00000112663 1967 2.221 - 0.744 - - - 0.773 0.704 - - homeobox B1b [Source:ZFIN;Acc:ZDB-GENE-980526-290]
13. fkbp3 ENSDARG00000098059 5428 1.89 0.987 - 0.903 - - - - - - FK506 binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-030616-419]
14. necap2 ENSDARG00000046002 4372 1.871 0.987 - 0.884 - - - - - - NECAP endocytosis associated 2 [Source:ZFIN;Acc:ZDB-GENE-050522-67]
15. ppapdc1b ppapdc1b 2866 1.865 0.998 - 0.867 - - - - - -
16. ptgs1 ENSDARG00000052148 2443 1.848 0.954 - 0.894 - - - - - - prostaglandin-endoperoxide synthase 1 [Source:ZFIN;Acc:ZDB-GENE-020530-1]
17. sdhc ENSDARG00000038608, ENSDARG00000110542, ENSDARG00000114672 8862 1.83 0.957 - 0.873 - - - - - - succinate dehydrogenase complex, subunit C, integral membrane protein [Source:ZFIN;Acc:ZDB-GENE-040801-26]
18. nrg1 ENSDARG00000104314 1081 1.806 0.997 0.809 - - - - - - - neuregulin 1 [Source:ZFIN;Acc:ZDB-GENE-050302-113]
19. sas sas 1783 1.801 0.997 - - - - - - - 0.804
20. hmgcrb ENSDARG00000105206 2080 1.773 0.999 - - - - - - - 0.774 3-hydroxy-3-methylglutaryl-CoA reductase b [Source:ZFIN;Acc:ZDB-GENE-051108-1]
21. tmeff1b ENSDARG00000056740 11253 1.771 0.992 - - - - 0.779 - - - transmembrane protein with EGF-like and two follistatin-like domains 1b [Source:ZFIN;Acc:ZDB-GENE-050706-143]
22. lin52 ENSDARG00000070833 2271 1.758 0.995 - - - - - 0.763 - - lin-52 DREAM MuvB core complex component [Source:ZFIN;Acc:ZDB-GENE-061110-82]
23. sel1l ENSDARG00000004581 2246 1.746 0.995 - - - - - - - 0.751 SEL1L, ERAD E3 ligase adaptor subunit [Source:ZFIN;Acc:ZDB-GENE-041001-122]
24. cops4 ENSDARG00000043732 1508 1.742 - 0.846 0.896 - - - - - - COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis) [Source:ZFIN;Acc:ZDB-GENE-030131-4317]
25. zgc:114130 ENSDARG00000040725, ENSDARG00000116854 806 1.741 0.999 - - - - 0.742 - - - zgc:114130 [Source:ZFIN;Acc:ZDB-GENE-050913-48]
26. sf3b2 ENSDARG00000018049 4675 1.732 0.881 - 0.851 - - - - - - splicing factor 3b, subunit 2 [Source:ZFIN;Acc:ZDB-GENE-070928-1]
27. GRAMD4 GRAMD4 1967 1.727 - - - - - - 0.775 - 0.952
28. zfand5b ENSDARG00000002271 4145 1.719 0.997 - - - - 0.722 - - - zinc finger, AN1-type domain 5b [Source:ZFIN;Acc:ZDB-GENE-040426-875]
29. Sep-02 Sep-02 10074 1.715 0.979 - - - - 0.736 - - -
30. nckap5l ENSDARG00000079148 4227 1.71 0.995 - - - - 0.715 - - - NCK-associated protein 5-like [Source:ZFIN;Acc:ZDB-GENE-090313-304]
31. znf207a ENSDARG00000015538 2630 1.708 - 0.809 0.899 - - - - - - zinc finger protein 207, a [Source:ZFIN;Acc:ZDB-GENE-040426-2273]
32. arhgap12b ENSDARG00000026482, ENSDARG00000109973 1142 1.705 - 0.787 0.918 - - - - - - Rho GTPase activating protein 12b [Source:ZFIN;Acc:ZDB-GENE-040426-1727]
33. zbtb18 ENSDARG00000028228 3653 1.705 - - 0.924 - - 0.781 - - - zinc finger and BTB domain containing 18 [Source:ZFIN;Acc:ZDB-GENE-050419-73]
34. limk2 ENSDARG00000005104 2598 1.697 0.963 - - - - - - - 0.734 LIM domain kinase 2 [Source:ZFIN;Acc:ZDB-GENE-040718-398]
35. zgc:112982 ENSDARG00000001829, ENSDARG00000110590, ENSDARG00000111057 2330 1.694 - 0.779 0.915 - - - - - - zgc:112982 [Source:ZFIN;Acc:ZDB-GENE-050306-55]
36. nelfcd ENSDARG00000021097 676 1.692 - - 0.906 0.786 - - - - - negative elongation factor complex member C/D [Source:ZFIN;Acc:ZDB-GENE-040426-720]
37. tmem222a ENSDARG00000069589 1766 1.69 - - 0.918 - - 0.772 - - - transmembrane protein 222a [Source:ZFIN;Acc:ZDB-GENE-050306-17]
38. bida ENSDARG00000069290, ENSDARG00000112031 825 1.684 - - 0.904 - - - - - 0.780 BH3 interacting domain death agonist [Source:ZFIN;Acc:ZDB-GENE-050419-35]
39. polr2j ENSDARG00000035146 1493 1.681 - - 0.902 - - - - - 0.779 polymerase (RNA) II (DNA directed) polypeptide J [Source:ZFIN;Acc:ZDB-GENE-050522-120]
40. ube2a ENSDARG00000098466 12765 1.673 0.878 - 0.795 - - - - - - ubiquitin-conjugating enzyme E2A (RAD6 homolog) [Source:ZFIN;Acc:ZDB-GENE-030616-72]
41. ap2s1 ENSDARG00000026967 18613 1.672 0.844 - - - - - - - 0.828 adaptor related protein complex 2 subunit sigma 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2174]
42. faf1 ENSDARG00000022418 2922 1.667 - - 0.902 - - - 0.765 - - Fas (TNFRSF6) associated factor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2863]
43. dlgap4a ENSDARG00000060849 1813 1.666 - - 0.903 - - 0.763 - - - discs, large (Drosophila) homolog-associated protein 4a [Source:ZFIN;Acc:ZDB-GENE-080219-51]
44. psd3l ENSDARG00000104820 1201 1.66 - - 0.921 - - - 0.739 - - pleckstrin and Sec7 domain containing 3, like [Source:ZFIN;Acc:ZDB-GENE-030131-8195]
45. qars ENSDARG00000010316 2715 1.659 - - 0.878 - - - - - 0.781 glutaminyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-040426-1011]
46. sgut1 3470 1.656 - - 0.864 - - - - - 0.792 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone, transcript variant X1
47. tmem11 ENSDARG00000070866 1319 1.654 - - - - - - 0.721 - 0.933 transmembrane protein 11 [Source:ZFIN;Acc:ZDB-GENE-050417-37]
48. taf13 ENSDARG00000070834, ENSDARG00000109314 1982 1.651 - - 0.910 - - - - - 0.741 TATA-box binding protein associated factor 13 [Source:ZFIN;Acc:ZDB-GENE-030131-2873]
49. ppwd1 ENSDARG00000063161 752 1.649 - - 0.906 - - - - 0.743 - peptidylprolyl isomerase domain and WD repeat containing 1 [Source:ZFIN;Acc:ZDB-GENE-070615-16]
50. tmem231 ENSDARG00000042272 557 1.647 - 0.737 0.910 - - - - - - transmembrane protein 231 [Source:ZFIN;Acc:ZDB-GENE-040426-1386]
51. calcoco1 calcoco1 1060 1.647 - 0.847 - - - - - 0.800 -
52. ap1s2 ENSDARG00000058504, ENSDARG00000114515 6499 1.642 - - 0.927 - - - 0.715 - - adaptor related protein complex 1 subunit sigma 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5448]
53. vangl2 ENSDARG00000027397 2418 1.64 - - 0.902 - - 0.738 - - - VANGL planar cell polarity protein 2 [Source:ZFIN;Acc:ZDB-GENE-020507-3]
54. pcbp2 ENSDARG00000099039 4248 1.639 - - 0.922 - - - - - 0.717 poly(rC) binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-563]
55. ubtf ENSDARG00000035066 4070 1.638 - - 0.877 - - - 0.761 - - upstream binding transcription factor [Source:ZFIN;Acc:ZDB-GENE-030616-252]
56. tnks tnks 1695 1.638 - - - 0.798 - 0.840 - - -
57. marcksb ENSDARG00000008803 42949 1.637 0.902 - - - - 0.735 - - - myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
58. BX294110.1 ENSDARG00000096875 1761 1.634 - 0.853 - - - - - - 0.781
59. eif4g2a ENSDARG00000020377, ENSDARG00000112658 6895 1.629 - - - - - 0.719 - - 0.910 eukaryotic translation initiation factor 4, gamma 2a [Source:ZFIN;Acc:ZDB-GENE-030131-2173]
60. ctdsp1 ENSDARG00000040674 2828 1.628 - - 0.899 - - - - - 0.729 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-050522-523]
61. med13b ENSDARG00000003910 1143 1.627 - - 0.919 - - 0.708 - - - mediator complex subunit 13b [Source:ZFIN;Acc:ZDB-GENE-030131-3529]
62. bri3bp ENSDARG00000010108 6295 1.624 - - 0.824 - - 0.800 - - - bri3 binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-5254]
63. tubgcp2 ENSDARG00000013079 1520 1.623 - - 0.919 - - 0.704 - - - tubulin, gamma complex associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-031118-150]
64. coe2 coe2 1633 1.621 - - 0.908 - - 0.713 - - -
65. AL844567.1 AL844567.1 1605 1.621 - - 0.913 - - 0.708 - - -
66. gtf2e2 ENSDARG00000012672, ENSDARG00000109689, ENSDARG00000115211 1677 1.621 - 0.769 - - - - 0.852 - - general transcription factor IIE, polypeptide 2, beta [Source:ZFIN;Acc:ZDB-GENE-030131-6794]
67. C7H20orf27 C7H20orf27 1864 1.619 - - 0.873 - - - - - 0.746
68. zmat2 ENSDARG00000004956 1676 1.618 - - 0.914 - - 0.704 - - - zinc finger, matrin-type 2 [Source:ZFIN;Acc:ZDB-GENE-030131-3197]
69. ppp3ccb ENSDARG00000057456, ENSDARG00000116250 6265 1.617 - - 0.839 - - - 0.778 - - protein phosphatase 3, catalytic subunit, gamma isozyme, b [Source:ZFIN;Acc:ZDB-GENE-070112-1102]
70. srfbp1 ENSDARG00000075323 2262 1.592 - 0.808 - - - - - - 0.784 serum response factor binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1991]
71. efnb3b ENSDARG00000042277 5823 1.587 - - 0.881 - - 0.706 - - - ephrin-B3b [Source:ZFIN;Acc:ZDB-GENE-010618-3]
72. SNRPG ENSDARG00000099667 18697 1.583 0.874 0.709 - - - - - - - small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105]
73. kctd6a ENSDARG00000043095 480 1.581 - 0.774 - - - - 0.807 - - potassium channel tetramerization domain containing 6a [Source:ZFIN;Acc:ZDB-GENE-050208-474]
74. C7H16orf87 C7H16orf87 5197 1.581 - 0.719 - - - - - - 0.862
75. IDH2 ENSDARG00000003795 18659 1.579 0.828 - 0.751 - - - - - - isocitrate dehydrogenase 2 (NADP+), mitochondrial [Source:ZFIN;Acc:ZDB-GENE-031118-95]
76. cadm4 ENSDARG00000040291 2284 1.578 - 0.757 - - - 0.821 - - - cell adhesion molecule 4 [Source:ZFIN;Acc:ZDB-GENE-041114-138]
77. GATAD2B ENSDARG00000005834 3855 1.577 - - 0.843 - - 0.734 - - - GATA zinc finger domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-060503-655]
78. ythdf1 ENSDARG00000016447 3391 1.574 - 0.701 0.873 - - - - - - YTH N(6)-methyladenosine RNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2786]
79. usp10 ENSDARG00000103422 4247 1.572 - 0.824 - - - - 0.748 - - ubiquitin specific peptidase 10 [Source:ZFIN;Acc:ZDB-GENE-030219-132]
80. psmd1 ENSDARG00000003189 4373 1.569 - 0.701 - - - - 0.868 - - proteasome 26S subunit, non-ATPase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-810]
81. cltcb ENSDARG00000090716 5544 1.566 - - - - - - 0.700 - 0.866 clathrin, heavy chain b (Hc) [Source:ZFIN;Acc:ZDB-GENE-050227-12]
82. nucks1b ENSDARG00000012777 4468 1.561 - - - - - - 0.767 - 0.794 nuclear casein kinase and cyclin-dependent kinase substrate 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4544]
83. ppp1r14ab ENSDARG00000017710, ENSDARG00000110779 3296 1.558 - - - - - 0.716 0.842 - - protein phosphatase 1, regulatory (inhibitor) subunit 14Ab [Source:ZFIN;Acc:ZDB-GENE-040426-1783]
84. ctbp1 ENSDARG00000057007, ENSDARG00000115804 5795 1.557 - - - - - 0.809 0.748 - - C-terminal binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-010130-1]
85. tagln3b ENSDARG00000058394, ENSDARG00000115045 2756 1.557 0.846 0.711 - - - - - - - transgelin 3b [Source:ZFIN;Acc:ZDB-GENE-030131-4199]
86. sptbn2 ENSDARG00000053956 8452 1.552 - 0.709 0.843 - - - - - - spectrin, beta, non-erythrocytic 2 [Source:ZFIN;Acc:ZDB-GENE-030131-787]
87. MRPS12_1 MRPS12_1 2714 1.548 - 0.770 - - - - - - 0.778
88. dus2l dus2l 544 1.546 - - - 0.841 - - 0.705 - -
89. tprg1l ENSDARG00000068149 1605 1.545 - 0.844 - - - 0.701 - - - tumor protein p63 regulated 1-like [Source:ZFIN;Acc:ZDB-GENE-070531-2]
90. gltscr2 gltscr2 5763 1.539 - - 0.834 - - - - - 0.705
91. nucks1a ENSDARG00000078473 28285 1.526 - 0.720 - - - 0.806 - - - nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
92. cdc27 ENSDARG00000056258 1836 1.526 - - - - - 0.796 0.730 - - cell division cycle 27 [Source:ZFIN;Acc:ZDB-GENE-990706-2]
93. kdm5c ENSDARG00000006124 4389 1.523 - - - - - 0.740 0.783 - - lysine (K)-specific demethylase 5C [Source:ZFIN;Acc:ZDB-GENE-060810-94]
94. cnksr1 ENSDARG00000032932, ENSDARG00000109531 2272 1.521 - 0.752 - - - - - - 0.769 connector enhancer of kinase suppressor of Ras 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1802]
95. xrn1 ENSDARG00000091652 2864 1.518 - - - - - - 0.726 - 0.792 5'-3' exoribonuclease 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1203]
96. ppih ENSDARG00000041530 2085 1.515 - - - - - - 0.727 - 0.788 peptidylprolyl isomerase H (cyclophilin H) [Source:ZFIN;Acc:ZDB-GENE-040625-127]
97. dnaja2l ENSDARG00000010745 2367 1.515 - - - - - 0.723 0.792 - - DnaJ (Hsp40) homolog, subfamily A, member 2, like [Source:ZFIN;Acc:ZDB-GENE-030131-2884]
98. PPFIBP1_2 PPFIBP1_2 1274 1.514 - 0.733 - - - - - - 0.781
99. pum1 ENSDARG00000099256 5017 1.512 - 0.762 - - - 0.750 - - - pumilio RNA-binding family member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2074]
100. ckbb ENSDARG00000043257 3503 1.512 - - - - - 0.704 - - 0.808 creatine kinase, brain b [Source:ZFIN;Acc:ZDB-GENE-020103-2]

There are 1612 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA