Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for gsx1

Gene Name Gene ID Reads Annotation
gsx1 ENSDARG00000035735 1243 GS homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-041008-135]










Genes with expression patterns similar to gsx1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. gsx1 ENSDARG00000035735 1243 8 1.000 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 GS homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-041008-135]
2. mdkb ENSDARG00000020708 5393 4.189 0.822 - 0.919 - - 0.753 0.815 0.880 - midkine b [Source:ZFIN;Acc:ZDB-GENE-010131-6]
3. dpysl5a ENSDARG00000011141 1827 4.12 - - 0.812 - - 0.816 0.987 0.739 0.766 dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
4. pou4f1 ENSDARG00000005559 821 3.487 0.813 - - - - 0.903 0.966 - 0.805 POU class 4 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-000523-2]
5. sox19a ENSDARG00000010770, ENSDARG00000110497 4683 3.442 - - - - - 0.797 0.983 0.855 0.807 SRY (sex determining region Y)-box 19a [Source:ZFIN;Acc:ZDB-GENE-980526-102]
6. her2 ENSDARG00000038205 3219 3.418 - - - - - 0.765 0.965 0.887 0.801 hairy-related 2 [Source:ZFIN;Acc:ZDB-GENE-980526-274]
7. ptprna ENSDARG00000058646 1327 3.374 - - 0.848 - - 0.793 0.957 0.776 - protein tyrosine phosphatase, receptor type, Na [Source:ZFIN;Acc:ZDB-GENE-030131-3511]
8. scrt1b ENSDARG00000040214, ENSDARG00000110984 533 3.369 - - 0.886 - - 0.743 0.922 - 0.818 scratch family zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-050327-72]
9. fez1 ENSDARG00000023174 701 3.329 0.813 - - - - 0.792 0.911 - 0.813 fasciculation and elongation protein zeta 1 (zygin I) [Source:ZFIN;Acc:ZDB-GENE-040426-2723]
10. ndrg4 ENSDARG00000103937 1234 3.322 0.837 - - - - 0.837 0.928 - 0.720 NDRG family member 4 [Source:ZFIN;Acc:ZDB-GENE-060512-226]
11. GADD45G GADD45G 382 3.256 0.845 - - - - 0.783 0.890 - 0.738
12. mllt11 ENSDARG00000071026 2518 3.243 0.720 - - - - 0.911 0.896 0.716 - MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
13. C8H1orf106 C8H1orf106 2690 3.182 - - - - - 0.865 0.884 0.708 0.725
14. SPTBN4_1 ENSDARG00000092624 473 3.178 - - - - - 0.854 0.786 0.738 0.800 spectrin beta, non-erythrocytic 4 [Source:HGNC Symbol;Acc:HGNC:14896]
15. vezf1a ENSDARG00000008247 1449 3.174 - - - - - 0.765 0.772 0.799 0.838 vascular endothelial zinc finger 1a [Source:ZFIN;Acc:ZDB-GENE-040108-4]
16. zic1 ENSDARG00000015567 2520 3.17 0.750 - 0.885 - - 0.723 0.812 - - zic family member 1 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-000208-4]
17. cadm3 ENSDARG00000057013 1545 2.762 0.919 - - - - 0.918 0.925 - - cell adhesion molecule 3 [Source:ZFIN;Acc:ZDB-GENE-060512-196]
18. scn8aa ENSDARG00000005775 792 2.748 0.827 - - - - 0.960 0.961 - - sodium channel, voltage gated, type VIII, alpha subunit a [Source:ZFIN;Acc:ZDB-GENE-000828-1]
19. cdk5r1b ENSDARG00000045087 2075 2.728 0.843 - - - - 0.959 0.926 - - cyclin-dependent kinase 5, regulatory subunit 1b (p35) [Source:ZFIN;Acc:ZDB-GENE-040718-220]
20. slc1a2b ENSDARG00000102453 3136 2.721 0.794 - - - - 0.948 0.979 - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
21. cspg5a ENSDARG00000069981 1699 2.719 - - - - - 0.959 0.946 0.814 - chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
22. elavl4 ENSDARG00000045639 998 2.707 0.840 - - - - 0.928 0.939 - - ELAV like neuron-specific RNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-990415-246]
23. myt1a ENSDARG00000074030, ENSDARG00000116035 2839 2.706 - - - - - 0.922 0.974 0.810 - myelin transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3885]
24. rab3ab ENSDARG00000043835 1267 2.702 0.799 - - - - 0.916 0.987 - - RAB3A, member RAS oncogene family, b [Source:ZFIN;Acc:ZDB-GENE-041210-268]
25. rusc1 ENSDARG00000078125 617 2.699 0.794 - - - - 0.950 0.955 - - RUN and SH3 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-100922-274]
26. SKOR2 SKOR2 1041 2.694 0.861 - - - - 0.866 0.967 - -
27. cntn4 ENSDARG00000098161, ENSDARG00000109387 437 2.691 0.842 - - - - 0.880 0.969 - - contactin 4 [Source:ZFIN;Acc:ZDB-GENE-060929-776]
28. TUBB8P7_1 TUBB8P7_1 2722 2.678 0.789 - - - - 0.951 0.938 - -
29. stx1b ENSDARG00000000503 2724 2.676 0.735 - - - - 0.957 0.984 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
30. slc6a5_1 ENSDARG00000067964, ENSDARG00000111378 1111 2.66 0.827 - - - - 0.905 0.928 - - solute carrier family 6 (neurotransmitter transporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-050105-2]
31. lgi2b ENSDARG00000069701, ENSDARG00000116343 66 2.658 0.871 - - - - 0.900 0.887 - - leucine-rich repeat LGI family, member 2b [Source:ZFIN;Acc:ZDB-GENE-060217-3]
32. scn2b ENSDARG00000101713 796 2.657 0.786 - - - - 0.915 0.956 - - sodium channel, voltage-gated, type II, beta [Source:ZFIN;Acc:ZDB-GENE-070920-1]
33. INA INA 950 2.656 0.736 - - - - 0.965 0.955 - -
34. FGFBP3 FGFBP3 993 2.655 - - - - - 0.914 0.961 - 0.780
35. cntnap2b ENSDARG00000074558, ENSDARG00000109616, ENSDARG00000116850 559 2.655 - - - - - 0.868 0.935 - 0.852 contactin associated protein like 2b [Source:NCBI gene;Acc:563345]
36. APBB3 ENSDARG00000053771 654 2.649 0.863 - - - - 0.849 0.937 - - amyloid beta (A4) precursor protein-binding, family B, member 3 [Source:ZFIN;Acc:ZDB-GENE-140106-53]
37. gpr85 ENSDARG00000068701, ENSDARG00000116501 372 2.64 - - - - - 0.918 0.943 - 0.779 G protein-coupled receptor 85 [Source:ZFIN;Acc:ZDB-GENE-000710-2]
38. si:ch211-11c15.3 si:ch211-11c15.3 1279 2.639 0.827 - - - - 0.855 0.957 - -
39. tuba1c ENSDARG00000055216 8384 2.635 - - - - - 0.931 0.968 - 0.736 tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
40. MAP1A MAP1A 847 2.635 0.825 - - - - 0.883 0.927 - -
41. calb1 ENSDARG00000031598 252 2.632 0.870 - - - - 0.878 0.884 - - calbindin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8107]
42. atp2b3a ENSDARG00000043474, ENSDARG00000112865 914 2.628 0.780 - - - - 0.879 0.969 - - ATPase plasma membrane Ca2+ transporting 3a [Source:ZFIN;Acc:ZDB-GENE-040718-174]
43. dpysl3 ENSDARG00000002587 4381 2.623 - - - - - 0.963 0.953 - 0.707 dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
44. nova1 ENSDARG00000020178 4129 2.611 - - - - - 0.911 0.970 0.730 - neuro-oncological ventral antigen 1 [Source:ZFIN;Acc:ZDB-GENE-060526-113]
45. AGO1 ENSDARG00000092644 4521 2.608 - - 0.758 - - 0.883 0.967 - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
46. tox ENSDARG00000032317 9126 2.606 - - - - - 0.802 0.964 - 0.840 thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]
47. snap25a ENSDARG00000020609 4537 2.604 0.730 - - - - 0.930 0.944 - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
48. dbx1a ENSDARG00000086393 3161 2.597 - - - - - 0.810 0.924 0.863 - developing brain homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-000128-8]
49. evx2 ENSDARG00000059255 317 2.595 0.865 - - - - 0.898 0.832 - - even-skipped homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-980526-215]
50. nefmb ENSDARG00000043697 2052 2.591 0.778 - - - - 0.956 0.857 - - neurofilament, medium polypeptide b [Source:ZFIN;Acc:ZDB-GENE-070103-4]
51. ATP6AP1L ATP6AP1L 164 2.591 0.818 - - - - 0.885 0.888 - -
52. sypb ENSDARG00000002230 262 2.584 0.723 - - - - 0.871 0.990 - - synaptophysin b [Source:ZFIN;Acc:ZDB-GENE-040718-205]
53. gap43 ENSDARG00000099744 4114 2.58 0.753 - - - - 0.883 0.944 - - growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
54. nrn1a ENSDARG00000071860 1311 2.577 0.807 - - - - 0.814 0.956 - - neuritin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-212]
55. olfm1b ENSDARG00000014053 1392 2.576 0.718 - - - - 0.870 0.988 - - olfactomedin 1b [Source:ZFIN;Acc:ZDB-GENE-040801-228]
56. sh3gl2 sh3gl2 1305 2.575 0.736 - - - - 0.895 0.944 - -
57. cacng3b ENSDARG00000076401 91 2.574 0.860 - - - - 0.807 0.907 - - calcium channel, voltage-dependent, gamma subunit 3b [Source:ZFIN;Acc:ZDB-GENE-090828-1]
58. pou3f2a ENSDARG00000070220 817 2.571 - - - - - 0.817 0.926 - 0.828 POU class 3 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-139]
59. fyna ENSDARG00000011370 1679 2.569 - - - - - 0.816 0.925 0.828 - FYN proto-oncogene, Src family tyrosine kinase a [Source:ZFIN;Acc:ZDB-GENE-030903-5]
60. stmn2a ENSDARG00000033234 2272 2.568 0.822 - - - - 0.791 0.955 - - stathmin 2a [Source:ZFIN;Acc:ZDB-GENE-041010-85]
61. sncgb ENSDARG00000109715 1014 2.567 0.729 - - - - 0.895 0.943 - - synuclein, gamma b (breast cancer-specific protein 1) [Source:ZFIN;Acc:ZDB-GENE-050522-235]
62. kcnd1 ENSDARG00000074746 153 2.566 0.792 - - - - 0.919 0.855 - - potassium voltage-gated channel, Shal-related subfamily, member 1 [Source:ZFIN;Acc:ZDB-GENE-081105-40]
63. CAMSAP3 ENSDARG00000059475 263 2.561 0.847 - - - - 0.813 0.901 - - calmodulin regulated spectrin-associated protein family, member 3 [Source:ZFIN;Acc:ZDB-GENE-060503-811]
64. her4.1 ENSDARG00000056732 1264 2.55 - - 0.724 - - 0.919 0.907 - - hairy-related 4, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-980526-521]
65. lhx5 ENSDARG00000057936 785 2.545 0.783 - - - - 0.818 0.944 - - LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]
66. SV2B SV2B 208 2.54 0.800 - - - - 0.816 0.924 - -
67. nacad ENSDARG00000012347 1268 2.54 0.768 - - - - 0.915 0.857 - - NAC alpha domain containing [Source:ZFIN;Acc:ZDB-GENE-091020-7]
68. Sep-03 Sep-03 1124 2.533 - - 0.809 - - 0.908 0.816 - -
69. stmn2b ENSDARG00000070537 1586 2.53 0.735 - - - - 0.922 0.873 - - stathmin 2b [Source:ZFIN;Acc:ZDB-GENE-050522-207]
70. TUSC5 TUSC5 1436 2.527 0.768 - - - - 0.802 0.957 - -
71. stap2a ENSDARG00000092810 591 2.527 - - - - - - 0.838 0.839 0.850 signal transducing adaptor family member 2a [Source:ZFIN;Acc:ZDB-GENE-030131-5383]
72. atp2b3b ENSDARG00000023445 1424 2.526 0.861 - - - - 0.767 0.898 - - ATPase plasma membrane Ca2+ transporting 3b [Source:ZFIN;Acc:ZDB-GENE-080409-2]
73. dync1i1 ENSDARG00000060948 554 2.525 - - - - - 0.889 0.869 - 0.767 dynein, cytoplasmic 1, intermediate chain 1 [Source:ZFIN;Acc:ZDB-GENE-061215-62]
74. add2 ENSDARG00000074581 1402 2.525 0.798 - - - - 0.832 0.895 - - adducin 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-080718-4]
75. pcdh1gc5 ENSDARG00000104826 10052 2.523 - - - - - 0.869 0.943 0.711 - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
76. nmnat2 ENSDARG00000004580 370 2.522 0.841 - - - - 0.898 0.783 - - nicotinamide nucleotide adenylyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8201]
77. GJD2_1 GJD2_1 3045 2.512 0.761 - - - - 0.779 0.972 - -
78. syt4 ENSDARG00000036505 421 2.51 0.789 - - - - 0.873 0.848 - - synaptotagmin IV [Source:ZFIN;Acc:ZDB-GENE-030131-7297]
79. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 2.509 - - 0.809 - - 0.891 - - 0.809 POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
80. adam11 ENSDARG00000079204 298 2.505 0.701 - - - - 0.857 0.947 - - ADAM metallopeptidase domain 11 [Source:ZFIN;Acc:ZDB-GENE-070808-3]
81. gabrg2 ENSDARG00000053665 434 2.5 0.745 - - - - 0.834 0.921 - - gamma-aminobutyric acid (GABA) A receptor, gamma 2 [Source:ZFIN;Acc:ZDB-GENE-091118-65]
82. nes ENSDARG00000088805 2710 2.498 - - - - 0.722 0.835 0.941 - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
83. C21H5orf24 C21H5orf24 333 2.493 0.787 - - - - 0.749 0.957 - -
84. her4.3 ENSDARG00000070770 613 2.484 - - - - - 0.860 0.903 - 0.721 hairy-related 4, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-081030-7]
85. CR407704.1 CR407704.1 188 2.482 0.761 - - - - 0.834 0.887 - -
86. s1pr1 ENSDARG00000042690, ENSDARG00000113842, ENSDARG00000116038 2510 2.477 0.712 - - - - 0.925 0.840 - - sphingosine-1-phosphate receptor 1 [Source:ZFIN;Acc:ZDB-GENE-001228-2]
87. zgc:194665 ENSDARG00000004577 136 2.475 0.759 - - - - 0.938 0.778 - - zgc:194665 [Source:ZFIN;Acc:ZDB-GENE-080722-38]
88. prrt1 ENSDARG00000062208 368 2.475 0.764 - - - - 0.798 0.913 - - proline-rich transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-060503-686]
89. adcyap1b ENSDARG00000027740 1539 2.474 0.801 - - - - 0.890 0.783 - - adenylate cyclase activating polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-041010-89]
90. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 2.471 - - - - - 0.882 0.825 - 0.764 methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
91. SHANK1 ENSDARG00000060539 102 2.47 0.782 - - - - 0.901 0.787 - - SH3 and multiple ankyrin repeat domains 1 [Source:ZFIN;Acc:ZDB-GENE-130530-691]
92. NEFH NEFH 101 2.469 0.849 - - - - 0.773 0.847 - -
93. CRIP2 ENSDARG00000070670 323 2.455 0.817 - - - - 0.904 0.734 - - cysteine-rich protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2889]
94. hpca ENSDARG00000018397, ENSDARG00000110115 3866 2.455 0.787 - - - - 0.717 0.951 - - hippocalcin [Source:ZFIN;Acc:ZDB-GENE-040426-1683]
95. zic6 ENSDARG00000071496 402 2.455 0.736 - - - - 0.945 - 0.774 - zic family member 6 [Source:ZFIN;Acc:ZDB-GENE-061207-1]
96. dnm1b ENSDARG00000009281 219 2.453 0.846 - - - - 0.770 0.837 - - dynamin 1b [Source:ZFIN;Acc:ZDB-GENE-100920-3]
97. fzd3a ENSDARG00000021664 1958 2.449 - - 0.753 - - 0.819 0.877 - - frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
98. lmo3 ENSDARG00000008720, ENSDARG00000114518 4773 2.447 - - - - - 0.806 0.891 - 0.750 LIM domain only 3 [Source:ZFIN;Acc:ZDB-GENE-050522-201]
99. hmgb1b ENSDARG00000030479 10398 2.437 - - 0.714 - - 0.808 0.915 - - high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]
100. scg2b ENSDARG00000038574 345 2.437 - - - - - 0.798 0.882 0.757 - secretogranin II (chromogranin C), b [Source:ZFIN;Acc:ZDB-GENE-061103-160]

There are 1991 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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