Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for gli3

Gene Name Gene ID Reads Annotation
gli3 ENSDARG00000052131 986 GLI family zinc finger 3 [Source:ZFIN;Acc:ZDB-GENE-041111-162]










Genes with expression patterns similar to gli3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. gli3 ENSDARG00000052131 986 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 GLI family zinc finger 3 [Source:ZFIN;Acc:ZDB-GENE-041111-162]
2. bcar3 ENSDARG00000016981 714 1.813 - - - - - - 0.826 - 0.987 BCAR3, NSP family adaptor protein [Source:ZFIN;Acc:ZDB-GENE-080513-4]
3. ndc1 ENSDARG00000021120 2417 1.804 - - - - - - 0.822 - 0.982 NDC1 transmembrane nucleoporin [Source:ZFIN;Acc:ZDB-GENE-030131-7176]
4. arhgef25b ENSDARG00000014465 669 1.717 - 0.735 - - - - - - 0.982 Rho guanine nucleotide exchange factor (GEF) 25b [Source:ZFIN;Acc:ZDB-GENE-080225-17]
5. CR735107.2 CR735107.2 476 1.698 - - - - - 0.724 - - 0.974
6. SIK1 ENSDARG00000058606 1982 1.668 - 0.721 - - - - - - 0.947 salt-inducible kinase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9446]
7. prp19 prp19 4804 1.663 - - - - - - 0.769 - 0.894
8. hnrpkl ENSDARG00000007034 4660 1.651 - - - - - 0.840 - - 0.811 heterogeneous nuclear ribonucleoprotein K, like [Source:ZFIN;Acc:ZDB-GENE-040426-1923]
9. aktip ENSDARG00000026862, ENSDARG00000115058 2775 1.629 - - - - - 0.714 - - 0.915 akt interacting protein [Source:ZFIN;Acc:ZDB-GENE-030909-5]
10. ube2c ENSDARG00000101618, ENSDARG00000114670 5271 1.582 - - - - - - 0.778 - 0.804 ubiquitin-conjugating enzyme E2C [Source:ZFIN;Acc:ZDB-GENE-051030-48]
11. irak4 ENSDARG00000100534 108 1.566 0.784 - - - - 0.782 - - - interleukin-1 receptor-associated kinase 4 [Source:ZFIN;Acc:ZDB-GENE-040426-738]
12. MED17 ENSDARG00000006345 779 1.558 - - - - - 0.832 0.726 - - mediator complex subunit 17 [Source:ZFIN;Acc:ZDB-GENE-040302-1]
13. etv4 ENSDARG00000018303, ENSDARG00000115855 3889 1.554 - - - - - 0.768 - - 0.786 ets variant 4 [Source:ZFIN;Acc:ZDB-GENE-990415-71]
14. IP6K2 IP6K2 778 1.553 - 0.794 - - - 0.759 - - -
15. si:ch211-11k18.4 ENSDARG00000087869 3298 1.552 - - - - - - 0.709 - 0.843 si:ch211-11k18.4 [Source:ZFIN;Acc:ZDB-GENE-070912-22]
16. gpx7 ENSDARG00000091511 3045 1.551 - - - - - - 0.756 - 0.795 glutathione peroxidase 7 [Source:ZFIN;Acc:ZDB-GENE-050522-419]
17. sun1 ENSDARG00000055350 3622 1.544 - 0.702 - - - - - - 0.842 Sad1 and UNC84 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050522-551]
18. APOLD1_1 APOLD1_1 590 1.543 0.783 - - - - 0.760 - - -
19. keap1a ENSDARG00000016132 363 1.54 - 0.743 - - - 0.797 - - - kelch-like ECH-associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-556]
20. mtg2 ENSDARG00000063574 299 1.535 - 0.750 - - - 0.785 - - - mitochondrial ribosome-associated GTPase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2209]
21. commd4 ENSDARG00000061946 3281 1.51 - - - - - 0.808 0.702 - - COMM domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-060929-600]
22. sf3a1 ENSDARG00000041887 6702 1.509 - - - - - 0.795 0.714 - - splicing factor 3a, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030616-156]
23. chmp3 ENSDARG00000038064 577 1.506 - 0.767 - - - - 0.739 - - charged multivesicular body protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2600]
24. cox4i2 ENSDARG00000022509 362 1.506 - - - - - 0.799 - 0.707 - cytochrome c oxidase subunit 4I2 [Source:ZFIN;Acc:ZDB-GENE-040426-1775]
25. hells ENSDARG00000057738, ENSDARG00000112932, ENSDARG00000116012 1443 1.499 - - - - - - 0.780 0.719 - helicase, lymphoid specific [Source:ZFIN;Acc:ZDB-GENE-030131-9923]
26. bdh1 ENSDARG00000059388 3390 1.481 - 0.779 - - - - 0.702 - - 3-hydroxybutyrate dehydrogenase, type 1 [Source:ZFIN;Acc:ZDB-GENE-070410-130]
27. ppp2r2ba 321 1.477 0.756 - - - - - - 0.721 - protein phosphatase 2, regulatory subunit B, beta a, transcript variant X2
28. kansl1a ENSDARG00000090895 2593 1.469 - - 0.744 - - - 0.725 - - KAT8 regulatory NSL complex subunit 1a [Source:ZFIN;Acc:ZDB-GENE-121219-5]
29. tp53rk ENSDARG00000112667 806 1.468 - 0.767 - - - - 0.701 - - TP53 regulating kinase [Source:ZFIN;Acc:ZDB-GENE-050522-123]
30. frmd8 ENSDARG00000073696 2661 1.468 - 0.712 - - - - 0.756 - - FERM domain containing 8 [Source:ZFIN;Acc:ZDB-GENE-090812-5]
31. POLDIP3 ENSDARG00000099375 832 1.465 - - - - - 0.720 0.745 - - polymerase (DNA-directed), delta interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-120201-2]
32. ATP10B ENSDARG00000076230 989 1.463 - 0.701 - - - 0.762 - - - ATPase phospholipid transporting 10B [Source:ZFIN;Acc:ZDB-GENE-130530-796]
33. MZT1 ENSDARG00000096668 2514 1.46 0.705 - - - - - 0.755 - - mitotic spindle organizing protein 1 [Source:HGNC Symbol;Acc:HGNC:33830]
34. gbp1 ENSDARG00000038668 520 1.459 - 0.736 - - - 0.723 - - - guanylate binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040718-32]
35. ube2w ENSDARG00000044923 438 1.455 - 0.715 - - - 0.740 - - - ubiquitin-conjugating enzyme E2W (putative) [Source:ZFIN;Acc:ZDB-GENE-050506-94]
36. ssu72 ENSDARG00000031216 2350 1.454 - 0.709 - - - - 0.745 - - SSU72 homolog, RNA polymerase II CTD phosphatase [Source:ZFIN;Acc:ZDB-GENE-040426-1689]
37. rnf114 ENSDARG00000009886 725 1.452 - 0.716 - - - 0.736 - - - ring finger protein 114 [Source:ZFIN;Acc:ZDB-GENE-040813-1]
38. tradd ENSDARG00000036057, ENSDARG00000117083 1583 1.446 - - - - - 0.718 0.728 - - tnfrsf1a-associated via death domain [Source:ZFIN;Acc:ZDB-GENE-000511-5]
39. CABZ01115256.1 CABZ01115256.1 683 1.445 - 0.720 - - - 0.725 - - -
40. TRMT10A ENSDARG00000036678 621 1.442 0.702 - - - - 0.740 - - - tRNA methyltransferase 10A [Source:ZFIN;Acc:ZDB-GENE-130530-594]
41. agtrap ENSDARG00000077082, ENSDARG00000114680 329 1.438 - 0.706 - - - - 0.732 - - angiotensin II receptor-associated protein [Source:ZFIN;Acc:ZDB-GENE-050309-11]
42. TPMT TPMT 138 1.437 0.708 - - - - - 0.729 - -
43. polr2gl ENSDARG00000056127 1771 1.425 - - - 0.717 - - 0.708 - - polymerase (RNA) II (DNA directed) polypeptide G-like [Source:ZFIN;Acc:ZDB-GENE-030131-2808]
44. lig3 ENSDARG00000052553 2665 1.422 - 0.702 - - - 0.720 - - - ligase III, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-030131-8453]
45. orc4 ENSDARG00000101161 1081 1.421 - - 0.707 - - - - 0.714 - origin recognition complex, subunit 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2224]
46. zgc:77056 ENSDARG00000029615 297 1.417 - 0.714 - - - - 0.703 - - zgc:77056 [Source:ZFIN;Acc:ZDB-GENE-030131-5248]
47. hmox2b ENSDARG00000078452, ENSDARG00000117010 884 1.406 - - 0.702 - - - 0.704 - - heme oxygenase 2b [Source:ZFIN;Acc:ZDB-GENE-091118-52]
48. ZNF337_3 ZNF337_3 561 0.993 - - - - - - - - 0.993
49. arfgef2 ENSDARG00000074702 1593 0.992 - - - - - - - - 0.992 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) [Source:ZFIN;Acc:ZDB-GENE-090312-50]
50. tmem51a ENSDARG00000068575, ENSDARG00000114656 596 0.992 - - - - - - - - 0.992 transmembrane protein 51a [Source:ZFIN;Acc:ZDB-GENE-061103-481]
51. plat ENSDARG00000062707 491 0.991 - - - - - - - - 0.991 plasminogen activator, tissue [Source:ZFIN;Acc:ZDB-GENE-081104-181]
52. elovl6 ENSDARG00000004402, ENSDARG00000114205 2286 0.991 - - - - - - - - 0.991 ELOVL fatty acid elongase 6 [Source:ZFIN;Acc:ZDB-GENE-030114-1]
53. si:dkey-219c3.2 ENSDARG00000075805 619 0.991 - - - - - - - - 0.991 si:dkey-219c3.2 [Source:ZFIN;Acc:ZDB-GENE-090313-238]
54. ift52 ENSDARG00000045025 606 0.991 - - - - - - - - 0.991 intraflagellar transport 52 homolog (Chlamydomonas) [Source:ZFIN;Acc:ZDB-GENE-040614-3]
55. krt1-c5 ENSDARG00000026979 325 0.991 - - - - - - - - 0.991 keratin, type 1, gene c5 [Source:ZFIN;Acc:ZDB-GENE-060316-3]
56. MAN2B2 ENSDARG00000079463 316 0.991 - - - - - - - - 0.991 mannosidase, alpha, class 2B, member 2 [Source:ZFIN;Acc:ZDB-GENE-140106-166]
57. SNORD88 SNORD88 232 0.991 - - - - - - - - 0.991
58. foxo1a ENSDARG00000099555 288 0.991 - - - - - - - - 0.991 forkhead box O1 a [Source:ZFIN;Acc:ZDB-GENE-061013-59]
59. wu:fd44f01 wu:fd44f01 391 0.991 - - - - - - - - 0.991
60. paip1 ENSDARG00000042892 902 0.991 - - - - - - - - 0.991 poly(A) binding protein interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-040801-247]
61. thrb ENSDARG00000021163 262 0.991 - - - - - - - - 0.991 thyroid hormone receptor beta [Source:ZFIN;Acc:ZDB-GENE-990415-268]
62. baiap2a ENSDARG00000062799 231 0.99 - - - - - - - - 0.990 BAI1-associated protein 2a [Source:ZFIN;Acc:ZDB-GENE-060421-2756]
63. GPR89A ENSDARG00000077983 463 0.99 - - - - - - - - 0.990 G protein-coupled receptor 89A [Source:HGNC Symbol;Acc:HGNC:31984]
64. jhdm1da jhdm1da 512 0.99 - - - - - - - - 0.990
65. zdhhc4 ENSDARG00000045159, ENSDARG00000117124 625 0.99 - - - - - - - - 0.990 zinc finger, DHHC-type containing 4 [Source:ZFIN;Acc:ZDB-GENE-030131-9031]
66. tmem176l.4 ENSDARG00000074390 1886 0.99 - - - - - - - - 0.990 transmembrane protein 176l.4 [Source:ZFIN;Acc:ZDB-GENE-030131-3532]
67. s100z ENSDARG00000038729 442 0.99 - - - - - - - - 0.990 S100 calcium binding protein Z [Source:ZFIN;Acc:ZDB-GENE-050522-69]
68. cpne3 ENSDARG00000104177, ENSDARG00000109906, ENSDARG00000110868 1084 0.99 - - - - - - - - 0.990 copine III [Source:ZFIN;Acc:ZDB-GENE-040426-763]
69. abcg4b ENSDARG00000078068 180 0.99 - - - - - - - - 0.990 ATP-binding cassette, sub-family G (WHITE), member 4b [Source:ZFIN;Acc:ZDB-GENE-080215-10]
70. kdelr3 ENSDARG00000040912 556 0.99 - - - - - - - - 0.990 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1387]
71. nsun4 ENSDARG00000021324 482 0.99 - - - - - - - - 0.990 NOL1/NOP2/Sun domain family, member 4 [Source:ZFIN;Acc:ZDB-GENE-041212-77]
72. CITED1 ENSDARG00000077769 692 0.99 - - - - - - - - 0.990 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5596]
73. glmna ENSDARG00000058267 597 0.99 - - - - - - - - 0.990 glomulin, FKBP associated protein a [Source:ZFIN;Acc:ZDB-GENE-041114-120]
74. wipi2 ENSDARG00000037871 425 0.989 - - - - - - - - 0.989 WD repeat domain, phosphoinositide interacting 2 [Source:ZFIN;Acc:ZDB-GENE-040718-488]
75. HNRNPH3 ENSDARG00000039466, ENSDARG00000113164, ENSDARG00000114248 551 0.989 - - - - - - - - 0.989 heterogeneous nuclear ribonucleoprotein H3 (2H9) [Source:ZFIN;Acc:ZDB-GENE-060421-3878]
76. ube2z ENSDARG00000029215 1059 0.989 - - - - - - - - 0.989 ubiquitin-conjugating enzyme E2Z [Source:ZFIN;Acc:ZDB-GENE-040718-15]
77. vox ENSDARG00000099761 801 0.989 - - - - - - - - 0.989 ventral homeobox [Source:ZFIN;Acc:ZDB-GENE-010108-1]
78. dpm1 ENSDARG00000057011, ENSDARG00000112573 1089 0.989 - - - - - - - - 0.989 dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-040801-115]
79. adamts9 ENSDARG00000077778 419 0.989 - - - - - - - - 0.989 ADAM metallopeptidase with thrombospondin type 1 motif, 9 [Source:ZFIN;Acc:ZDB-GENE-070814-6]
80. mgat3 mgat3 195 0.989 - - - - - - - - 0.989
81. FP236513.2 FP236513.2 443 0.989 - - - - - - - - 0.989
82. si:busm1-57f23.1 ENSDARG00000074425 418 0.988 - - - - - - - - 0.988 si:busm1-57f23.1 [Source:ZFIN;Acc:ZDB-GENE-030616-512]
83. CR391963.1 ENSDARG00000096833 518 0.988 - - - - - - - - 0.988
84. FAM110D FAM110D 3632 0.988 - - - - - - - - 0.988
85. tpte ENSDARG00000056985 724 0.988 - - - - - - - - 0.988 transmembrane phosphatase with tensin homology [Source:ZFIN;Acc:ZDB-GENE-030131-5503]
86. met ENSDARG00000070903 2088 0.988 - - - - - - - - 0.988 MET proto-oncogene, receptor tyrosine kinase [Source:ZFIN;Acc:ZDB-GENE-041014-1]
87. nrip2 ENSDARG00000079985 505 0.987 - - - - - - - - 0.987 nuclear receptor interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9425]
88. dlat ENSDARG00000015918 657 0.987 - - - - - - - - 0.987 dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex) [Source:ZFIN;Acc:ZDB-GENE-030131-2921]
89. sertad2b ENSDARG00000055530 785 0.987 - - - - - - - - 0.987 SERTA domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-030616-569]
90. actr10 ENSDARG00000038432 1598 0.987 - - - - - - - - 0.987 ARP10 actin related protein 10 homolog [Source:ZFIN;Acc:ZDB-GENE-040426-768]
91. lrrtm1 ENSDARG00000052713 1041 0.986 - - - - - - - - 0.986 leucine rich repeat transmembrane neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-050506-80]
92. hyal2 hyal2 2205 0.986 - - - - - - - - 0.986
93. si:dkey-119m17.2 509 0.986 - - - - - - - - 0.986 si:dkey-119m17.2, transcript variant X2
94. CT574587.1 ENSDARG00000097915 383 0.986 - - - - - - - - 0.986
95. EHBP1 ENSDARG00000043643 966 0.986 - - - - - - - - 0.986 EH domain binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-091006-4]
96. rint1 ENSDARG00000005547 898 0.986 - - - - - - - - 0.986 RAD50 interactor 1 [Source:ZFIN;Acc:ZDB-GENE-041210-174]
97. tchp ENSDARG00000035605 1695 0.986 - - - - - - - - 0.986 trichoplein, keratin filament binding [Source:ZFIN;Acc:ZDB-GENE-060421-3368]
98. qrich1 ENSDARG00000019797, ENSDARG00000111720, ENSDARG00000113429 1177 0.985 - - - - - - - - 0.985 glutamine-rich 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8204]
99. MICAL2 MICAL2 396 0.985 - - - - - - - - 0.985
100. arfrp1 ENSDARG00000057857 2840 0.985 - - - - - - - - 0.985 ADP-ribosylation factor related protein 1 [Source:ZFIN;Acc:ZDB-GENE-050227-14]

There are 1214 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA