Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for gga-mir-6643

Gene Name Gene ID Reads Annotation
gga-mir-6643 ENSGALG00000027935 4442 gga-mir-6643 [Source:miRBase;Acc:MI0022462]











Genes with expression patterns similar to gga-mir-6643

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. gga-mir-6643 ENSGALG00000027935 4442 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 gga-mir-6643 [Source:miRBase;Acc:MI0022462]
2. MAP1LC3A ENSGALG00000038721 2230 1.73 - - - - - - 0.985 0.745 - - microtubule associated protein 1 light chain 3 alpha
3. TBCCD1 ENSGALG00000006566 2696 0.984 - - - - - - 0.984 - - - TBCC domain containing 1 [Source:NCBI gene;Acc:424869]
4. NPHP3 ENSGALG00000034586 1465 0.984 - - - - - - 0.984 - - - nephrocystin 3, transcript variant X1
5. KCTD9 ENSGALG00000000275 3455 0.982 - - - - - - 0.982 - - - potassium channel tetramerization domain containing 9 [Source:NCBI gene;Acc:419526]
6. ENSGALG00000002923 ENSGALG00000002923 2233 0.981 - - - - - - 0.981 - - -
7. SLC1A1 ENSGALG00000010187 637 0.981 - - - - - - 0.981 - - - solute carrier family 1 member 1 [Source:HGNC Symbol;Acc:HGNC:10939]
8. CLCN3 ENSGALG00000009674 3704 0.981 - - - - - - 0.981 - - - chloride voltage-gated channel 3 [Source:HGNC Symbol;Acc:HGNC:2021]
9. RRN3 ENSGALG00000041989 3934 0.981 - - - - - - 0.981 - - - RRN3 homolog, RNA polymerase I transcription factor [Source:NCBI gene;Acc:416414]
10. POLR3E ENSGALG00000007008 4010 0.98 - - - - - - 0.980 - - - RNA polymerase III subunit E [Source:HGNC Symbol;Acc:HGNC:30347]
11. NDUFB8 ENSGALG00000005704 5781 0.98 - - - - - - 0.980 - - - NADH:ubiquinone oxidoreductase subunit B8 [Source:NCBI gene;Acc:423763]
12. DNAJA3 ENSGALG00000007821 3963 0.98 - - - - - - 0.980 - - - DnaJ heat shock protein family (Hsp40) member A3 [Source:HGNC Symbol;Acc:HGNC:11808]
13. SREBF2 ENSGALG00000041687 4519 0.98 - - - - - - 0.980 - - - sterol regulatory element binding transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:11290]
14. PNO1 ENSGALG00000009093 11153 0.979 - - - - - - 0.979 - - - partner of NOB1 homolog [Source:NCBI gene;Acc:769547]
15. UBAC1 ENSGALG00000042564 598 0.979 - - - - - - 0.979 - - - UBA domain containing 1 [Source:NCBI gene;Acc:427754]
16. SHQ1 ENSGALG00000007798 1982 0.979 - - - - - - 0.979 - - - SHQ1, H/ACA ribonucleoprotein assembly factor [Source:HGNC Symbol;Acc:HGNC:25543]
17. IRAK2 ENSGALG00000008407 5934 0.979 - - - - - - 0.979 - - - interleukin 1 receptor associated kinase 2 [Source:NCBI gene;Acc:416118]
18. MSRA ENSGALG00000028032 2607 0.979 - - - - - - 0.979 - - - methionine sulfoxide reductase A [Source:HGNC Symbol;Acc:HGNC:7377]
19. CAMKK2 ENSGALG00000040131 2795 0.979 - - - - - - 0.979 - - - calcium/calmodulin dependent protein kinase kinase 2, transcript variant X9
20. POPDC3 ENSGALG00000027420 700 0.979 - - - - - - 0.979 - - - popeye domain containing 3 [Source:NCBI gene;Acc:395434]
21. AP2B1 ENSGALG00000042125 13229 0.979 - - - - - - 0.979 - - - adaptor related protein complex 2 subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:563]
22. ABCD3 ENSGALG00000005647 4844 0.978 - - - - - - 0.978 - - - ATP binding cassette subfamily D member 3 [Source:NCBI gene;Acc:424487]
23. BFAR ENSGALG00000003111 1778 0.978 - - - - - - 0.978 - - - bifunctional apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:17613]
24. SDCCAG8 ENSGALG00000010713 311 0.977 - - - - - - 0.977 - - - serologically defined colon cancer antigen 8, transcript variant X5
25. AKAP7 ENSGALG00000029794 3287 0.977 - - - - - - 0.977 - - - A-kinase anchoring protein 7 [Source:HGNC Symbol;Acc:HGNC:377]
26. GCC2 ENSGALG00000016806 1085 0.977 - - - - - - 0.977 - - - GRIP and coiled-coil domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23218]
27. DNA2 ENSGALG00000004037 5426 0.977 - - - - - - 0.977 - - - DNA replication helicase/nuclease 2 [Source:NCBI gene;Acc:423688]
28. KLHL29 ENSGALG00000016495 582 0.977 - - - - - - 0.977 - - - kelch like family member 29 [Source:HGNC Symbol;Acc:HGNC:29404]
29. ARHGAP29 ENSGALG00000005683 3622 0.977 - - - - - - 0.977 - - - Rho GTPase activating protein 29 [Source:NCBI gene;Acc:424488]
30. MYST2 MYST2 8078 0.976 - - - - - - 0.976 - - -
31. CETN2 ENSGALG00000007510 1688 0.976 - - - - - - 0.976 - - - centrin 2 [Source:NCBI gene;Acc:422303]
32. AK6 ENSGALG00000020534 4791 0.976 - - - - - - 0.976 - - - adenylate kinase 6 [Source:NCBI gene;Acc:425215]
33. MTFMT ENSGALG00000007353 805 0.976 - - - - - - 0.976 - - - mitochondrial methionyl-tRNA formyltransferase [Source:HGNC Symbol;Acc:HGNC:29666]
34. BCAS1 ENSGALG00000007796 379 0.975 - - - - - - 0.975 - - - breast carcinoma amplified sequence 1 [Source:HGNC Symbol;Acc:HGNC:974]
35. ATN1 ENSGALG00000014554 3270 0.975 - - - - - - 0.975 - - - atrophin 1 [Source:HGNC Symbol;Acc:HGNC:3033]
36. RILPL2 ENSGALG00000003321 5632 0.975 - - - - - - 0.975 - - - Rab interacting lysosomal protein like 2 [Source:HGNC Symbol;Acc:HGNC:28787]
37. DISP1 3281 0.974 - - - - - - 0.974 - - - dispatched RND transporter family member 1, transcript variant X3
38. MOB1B ENSGALG00000011573 567 0.974 - - - - - - 0.974 - - - MOB kinase activator 1B [Source:HGNC Symbol;Acc:HGNC:29801]
39. HACE1 ENSGALG00000015415 1194 0.973 - - - - - - 0.973 - - - HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 [Source:NCBI gene;Acc:421788]
40. LEPROTL1 ENSGALG00000024482 4251 0.973 - - - - - - 0.973 - - - leptin receptor overlapping transcript-like 1
41. INTS10 ENSGALG00000010130 6320 0.971 - - - - - - 0.971 - - - integrator complex subunit 10 [Source:NCBI gene;Acc:422489]
42. TMEM108 ENSGALG00000036412 2903 0.971 - - - - - - 0.971 - - - transmembrane protein 108 [Source:HGNC Symbol;Acc:HGNC:28451]
43. EIF4G3 ENSGALG00000010084 5881 0.971 - - - - - - 0.971 - - - eukaryotic translation initiation factor 4 gamma 3 [Source:HGNC Symbol;Acc:HGNC:3298]
44. EI24 ENSGALG00000038097 24081 0.97 - - - - - - 0.970 - - - EI24, autophagy associated transmembrane protein [Source:NCBI gene;Acc:419711]
45. MOB2 ENSGALG00000030499 3658 0.97 - - - - - - 0.970 - - - MOB kinase activator 2 [Source:HGNC Symbol;Acc:HGNC:24904]
46. LMNB2 ENSGALG00000000470 4364 0.97 - - - - - - 0.970 - - - lamin B2 [Source:NCBI gene;Acc:396222]
47. METTL11A METTL11A 11876 0.97 - - - - - - 0.970 - - -
48. LATS2 4776 0.968 - - - - - - 0.968 - - - large tumor suppressor kinase 2
49. ARID4A ENSGALG00000012037 8554 0.967 - - - - - - 0.967 - - - AT-rich interaction domain 4A [Source:NCBI gene;Acc:423541]
50. YBX1 ENSGALG00000004848 20992 0.967 - - - - - - 0.967 - - - Y-box binding protein 1 [Source:NCBI gene;Acc:386575]
51. PPP3R1 ENSGALG00000023648 3417 0.965 - - - - - - 0.965 - - - protein phosphatase 3 regulatory subunit B, alpha [Source:NCBI gene;Acc:378804]
52. SCRN1 ENSGALG00000011176 3783 0.965 - - - - - - 0.965 - - - secernin 1 [Source:HGNC Symbol;Acc:HGNC:22192]
53. NCOA4 ENSGALG00000002066 10544 0.965 - - - - - - 0.965 - - - nuclear receptor coactivator 4 [Source:NCBI gene;Acc:423615]
54. MED6 ENSGALG00000029743 9414 0.964 - - - - - - 0.964 - - - mediator complex subunit 6 [Source:NCBI gene;Acc:426282]
55. E2F6 ENSGALG00000016454 4747 0.962 - - - - - - 0.962 - - - E2F transcription factor 6 [Source:NCBI gene;Acc:421943]
56. RBBP6 ENSGALG00000006043 9708 0.962 - - - - - - 0.962 - - - RB binding protein 6, ubiquitin ligase [Source:HGNC Symbol;Acc:HGNC:9889]
57. ENSGALG00000027854 ENSGALG00000027854 5007 0.959 - - - - - - 0.959 - - -
58. THOC2 ENSGALG00000008507 9501 0.959 - - - - - - 0.959 - - - THO complex 2 [Source:HGNC Symbol;Acc:HGNC:19073]
59. RBM12B ENSGALG00000035129 4314 0.958 - - - - - - 0.958 - - - RNA binding motif protein 12B [Source:NCBI gene;Acc:420223]
60. IMPACT ENSGALG00000015093 1334 0.956 - - - - - - 0.956 - - - impact RWD domain protein [Source:HGNC Symbol;Acc:HGNC:20387]
61. RPA1 ENSGALG00000003072 8023 0.956 - - - - - - 0.956 - - - replication protein A1 [Source:NCBI gene;Acc:417563]
62. TM9SF3 ENSGALG00000005534 15290 0.955 - - - - - - 0.955 - - - transmembrane 9 superfamily member 3
63. H2AFY_1 ENSGALG00000040141 4895 0.955 - - - - - - 0.955 - - - H2A histone family, member Y [Source:NCBI gene;Acc:395858]
64. LACTB2 ENSGALG00000038745 3460 0.955 - - - - - - 0.955 - - - lactamase beta 2 [Source:NCBI gene;Acc:420178]
65. OGFOD1 6926 0.955 - - - - - - 0.955 - - - 2-oxoglutarate and iron dependent oxygenase domain containing 1
66. ATE1 ENSGALG00000009502 3751 0.954 - - - - - - 0.954 - - - arginyltransferase 1 [Source:NCBI gene;Acc:423936]
67. NDUFA9 ENSGALG00000017282 14358 0.954 - - - - - - 0.954 - - - NADH:ubiquinone oxidoreductase subunit A9 [Source:NCBI gene;Acc:419039]
68. CHMP7 ENSGALG00000000409 8967 0.95 - - - - - - 0.950 - - - charged multivesicular body protein 7 [Source:NCBI gene;Acc:419535]
69. MED7 ENSGALG00000003870 4244 0.948 - - - - - - 0.948 - - - mediator complex subunit 7 [Source:HGNC Symbol;Acc:HGNC:2378]
70. SEMA4B ENSGALG00000008297 11202 0.947 - - - - - - 0.947 - - - semaphorin 4B [Source:HGNC Symbol;Acc:HGNC:10730]
71. SLC25A14 ENSGALG00000004063 5574 0.945 - - - - - - 0.945 - - - solute carrier family 25 member 14 [Source:NCBI gene;Acc:422141]
72. PRCP ENSGALG00000037521 4012 0.945 - - - - - - 0.945 - - - prolylcarboxypeptidase [Source:HGNC Symbol;Acc:HGNC:9344]
73. POLA1 ENSGALG00000016312 9440 0.944 - - - - - - 0.944 - - - DNA polymerase alpha 1, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9173]
74. SDF4 ENSGALG00000001872 6382 0.944 - - - - - - 0.944 - - - stromal cell derived factor 4 [Source:NCBI gene;Acc:419423]
75. MRE11A MRE11A 5754 0.939 - - - - - - 0.939 - - -
76. CCND1 ENSGALG00000007555 6715 0.938 - - - - - - 0.938 - - - cyclin D1 [Source:NCBI gene;Acc:396341]
77. XRN1 ENSGALG00000002706 4014 0.937 - - - - - - 0.937 - - - 5'-3' exoribonuclease 1 [Source:HGNC Symbol;Acc:HGNC:30654]
78. UBA3 ENSGALG00000013410 6923 0.937 - - - - - - 0.937 - - - ubiquitin like modifier activating enzyme 3 [Source:HGNC Symbol;Acc:HGNC:12470]
79. GFM1 ENSGALG00000009634 7213 0.933 - - - - - - 0.933 - - - G elongation factor mitochondrial 1 [Source:HGNC Symbol;Acc:HGNC:13780]
80. BTAF1 ENSGALG00000030598 3556 0.933 - - - - - - 0.933 - - - B-TFIID TATA-box binding protein associated factor 1 [Source:HGNC Symbol;Acc:HGNC:17307]
81. MRPS11 ENSGALG00000006777 16009 0.932 - - - - - - 0.932 - - - mitochondrial ribosomal protein S11 [Source:NCBI gene;Acc:415498]
82. BPTF ENSGALG00000038222 7521 0.931 - - - - - - 0.931 - - - bromodomain PHD finger transcription factor [Source:HGNC Symbol;Acc:HGNC:3581]
83. ALDH4A1 ENSGALG00000042184 9432 0.929 - - - - - - 0.929 - - - aldehyde dehydrogenase 4 family member A1 [Source:NCBI gene;Acc:419467]
84. RGCC ENSGALG00000016954 1282 0.929 - - - - - - 0.929 - - - regulator of cell cycle [Source:HGNC Symbol;Acc:HGNC:20369]
85. SOD2 ENSGALG00000011661 13178 0.928 - - - - - - 0.928 - - - superoxide dismutase 2 [Source:NCBI gene;Acc:374042]
86. CCDC58 ENSGALG00000014413 9022 0.928 - - - - - - 0.928 - - - coiled-coil domain containing 58 [Source:NCBI gene;Acc:418269]
87. PPIF ENSGALG00000004809 5586 0.928 - - - - - - 0.928 - - - peptidylprolyl isomerase F [Source:NCBI gene;Acc:423723]
88. ZMYND11 ENSGALG00000006599 5740 0.926 - - - - - - 0.926 - - - zinc finger MYND-type containing 11 [Source:HGNC Symbol;Acc:HGNC:16966]
89. FGD3 ENSGALG00000005237 4410 0.924 - - - - - - 0.924 - - - FYVE, RhoGEF and PH domain containing 3 [Source:HGNC Symbol;Acc:HGNC:16027]
90. POR ENSGALG00000002053 5223 0.924 - - - - - - 0.924 - - - cytochrome p450 oxidoreductase [Source:NCBI gene;Acc:417520]
91. GCLM ENSGALG00000005782 15789 0.922 - - - - - - 0.922 - - - glutamate-cysteine ligase modifier subunit [Source:NCBI gene;Acc:424492]
92. MFGE8 ENSGALG00000006702 6976 0.92 - - - - - - 0.920 - - - milk fat globule-EGF factor 8 protein [Source:NCBI gene;Acc:415494]
93. ARNT2 ENSGALG00000006445 7050 0.919 - - - - - - 0.919 - - - aryl hydrocarbon receptor nuclear translocator 2 [Source:HGNC Symbol;Acc:HGNC:16876]
94. TRAM1 ENSGALG00000041112 22876 0.919 - - - - - - 0.919 - - - translocation associated membrane protein 1 [Source:NCBI gene;Acc:378918]
95. PSMG3 ENSGALG00000004203 11240 0.918 - - - - - - 0.918 - - - proteasome assembly chaperone 3 [Source:NCBI gene;Acc:416463]
96. KIF15 ENSGALG00000036645 9946 0.917 - - - - - - 0.917 - - - kinesin family member 15 [Source:HGNC Symbol;Acc:HGNC:17273]
97. HDGFL3 ENSGALG00000006036 13576 0.917 - - - - - - 0.917 - - - HDGF like 3 [Source:HGNC Symbol;Acc:HGNC:24937]
98. LARP1 ENSGALG00000040109 14808 0.913 - - - - - - 0.913 - - - La ribonucleoprotein domain family member 1 [Source:HGNC Symbol;Acc:HGNC:29531]
99. XPA ENSGALG00000028998 8621 0.91 - - - - - - 0.910 - - - XPA, DNA damage recognition and repair factor [Source:NCBI gene;Acc:395659]
100. CENPF ENSGALG00000009690 10429 0.908 - - - - - - 0.908 - - - centromere protein F [Source:NCBI gene;Acc:395357]

There are 135 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA