Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Chicken data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for gga-mir-6596

Gene Name Gene ID Reads Annotation
gga-mir-6596 ENSGALG00000026117 2893 gga-mir-6596 [Source:miRBase;Acc:MI0022416]











Genes with expression patterns similar to gga-mir-6596

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. gga-mir-6596 ENSGALG00000026117 2893 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 gga-mir-6596 [Source:miRBase;Acc:MI0022416]
2. SAFB2 ENSGALG00000001948 10238 2.242 - - - - 0.723 - 0.730 0.789 - - scaffold attachment factor B2, transcript variant X6
3. MADH2 MADH2 13017 1.666 - - - - - - 0.746 0.920 - -
4. TMEM185A ENSGALG00000009139 4424 1.65 - - - - - - 0.741 0.909 - - transmembrane protein 185A [Source:HGNC Symbol;Acc:HGNC:17125]
5. LAMB1 ENSGALG00000007905 7737 1.627 - - - 0.737 - - - 0.890 - - laminin subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:6486]
6. SAR1B ENSGALG00000038753 6493 1.596 - - - - - - 0.757 0.839 - - secretion associated Ras related GTPase 1B [Source:NCBI gene;Acc:416314]
7. DNAJC3 ENSGALG00000016894 9048 1.574 - - - - - - 0.708 0.866 - - DnaJ heat shock protein family (Hsp40) member C3 [Source:NCBI gene;Acc:418787]
8. CHTF8 ENSGALG00000000632 7230 1.57 - - - - - - 0.724 0.846 - - chromosome transmission fidelity factor 8 [Source:NCBI gene;Acc:769609]
9. IGFBP7 ENSGALG00000037332 2993 1.561 - - - - - - - 0.849 0.712 - insulin like growth factor binding protein 7, transcript variant X1
10. CTCF 10811 1.552 - - - - - - 0.732 0.820 - - CCCTC-binding factor, transcript variant X2
11. BLOC1S5 ENSGALG00000012782 5885 1.533 - - - - - - 0.716 0.817 - - biogenesis of lysosomal organelles complex 1 subunit 5 [Source:NCBI gene;Acc:420866]
12. CCNC ENSGALG00000015471 6497 1.524 - - - - 0.728 - 0.796 - - - cyclin C [Source:NCBI gene;Acc:421791]
13. ST5 6869 1.511 - - - 0.707 - - 0.804 - - - suppression of tumorigenicity 5, transcript variant X1
14. PAXIP1 ENSGALG00000036064 3120 1.485 - - - 0.726 - - 0.759 - - - PAX interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:8624]
15. TK2 ENSGALG00000034216 5394 1.476 - - - 0.703 - - - 0.773 - - thymidine kinase 2, mitochondrial [Source:NCBI gene;Acc:427551]
16. BAG5 ENSGALG00000031062 4498 1.472 - - - 0.700 - - 0.772 - - - BCL2 associated athanogene 5 [Source:NCBI gene;Acc:423482]
17. AKT1 ENSGALG00000011620 4089 1.466 - - - 0.704 - - 0.762 - - - AKT serine/threonine kinase 1 [Source:NCBI gene;Acc:395928]
18. ENSGALG00000007514 ENSGALG00000007514 4866 1.441 - - - 0.706 - - 0.735 - - -
19. PPFIA1 ENSGALG00000035774 5258 1.414 - - - 0.709 - - 0.705 - - - PTPRF interacting protein alpha 1 [Source:HGNC Symbol;Acc:HGNC:9245]
20. SIPA1L2 ENSGALG00000037506 3651 0.932 - - - - - - - 0.932 - - signal induced proliferation associated 1 like 2 [Source:HGNC Symbol;Acc:HGNC:23800]
21. C10ORF58 C10ORF58 5045 0.932 - - - - - - - 0.932 - -
22. STX16 ENSGALG00000007541 6458 0.928 - - - - - - - 0.928 - - syntaxin 16 [Source:NCBI gene;Acc:419315]
23. PPM1B ENSGALG00000030691 4513 0.927 - - - - - - - 0.927 - - protein phosphatase, Mg2+/Mn2+ dependent 1B [Source:NCBI gene;Acc:421404]
24. gga-mir-1737 ENSGALG00000025206 3910 0.924 - - - - - - - 0.924 - - gga-mir-1737 [Source:miRBase;Acc:MI0007476]
25. DNA2 ENSGALG00000004037 5426 0.922 - - - - - - - 0.922 - - DNA replication helicase/nuclease 2 [Source:NCBI gene;Acc:423688]
26. MESDC2 MESDC2 11010 0.92 - - - - - - - 0.920 - -
27. CNEP1R1 ENSGALG00000029793 6536 0.92 - - - - - - - 0.920 - - CTD nuclear envelope phosphatase 1 regulatory subunit 1 [Source:NCBI gene;Acc:415736]
28. TMEM33 ENSGALG00000014248 6069 0.919 - - - - - - - 0.919 - - transmembrane protein 33 [Source:HGNC Symbol;Acc:HGNC:25541]
29. SERINC1 ENSGALG00000014868 12484 0.919 - - - - - - - 0.919 - - serine incorporator 1 [Source:NCBI gene;Acc:421722]
30. DMTF1 ENSGALG00000030844 3584 0.919 - - - - - - - 0.919 - - cyclin D binding myb like transcription factor 1 [Source:NCBI gene;Acc:418646]
31. ATAD2 ENSGALG00000034348 4440 0.916 - - - - - - - 0.916 - - ATPase family, AAA domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30123]
32. CHCHD6 ENSGALG00000006056 6121 0.915 - - - - - - - 0.915 - - coiled-coil-helix-coiled-coil-helix domain containing 6 [Source:HGNC Symbol;Acc:HGNC:28184]
33. MAP3K4 ENSGALG00000020003 6378 0.914 - - - - - - - 0.914 - - mitogen-activated protein kinase kinase kinase 4 [Source:HGNC Symbol;Acc:HGNC:6856]
34. RHPN2 ENSGALG00000004814 1865 0.911 - - - - - - - 0.911 - - rhophilin Rho GTPase binding protein 2 [Source:HGNC Symbol;Acc:HGNC:19974]
35. ZNF598 ENSGALG00000005598 8270 0.91 - - - - - - - 0.910 - - zinc finger protein 598 [Source:HGNC Symbol;Acc:HGNC:28079]
36. RPS6KA RPS6KA 6745 0.91 - - - - - - - 0.910 - -
37. SNTB1 ENSGALG00000034528 3907 0.909 - - - - - - - 0.909 - - syntrophin beta 1 [Source:NCBI gene;Acc:404774]
38. PLA2G12A ENSGALG00000012185 5261 0.908 - - - - - - - 0.908 - - phospholipase A2 group XIIA [Source:HGNC Symbol;Acc:HGNC:18554]
39. PDGF-A PDGF-A 5166 0.908 - - - - - - - 0.908 - -
40. SUN1 ENSGALG00000003781 3442 0.905 - - - - - - - 0.905 - - Sad1 and UNC84 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:18587]
41. TRIP11 ENSGALG00000010763 3146 0.905 - - - - - - - 0.905 - - thyroid hormone receptor interactor 11 [Source:HGNC Symbol;Acc:HGNC:12305]
42. CHMP2B ENSGALG00000015496 3973 0.905 - - - - - - - 0.905 - - charged multivesicular body protein 2B [Source:NCBI gene;Acc:418461]
43. TST ENSGALG00000012488 5314 0.9 - - - - - - - 0.900 - - thiosulfate sulfurtransferase [Source:NCBI gene;Acc:418049]
44. C1orf50 ENSGALG00000004800 4894 0.898 - - - - - - - 0.898 - - chromosome 1 open reading frame 50 [Source:HGNC Symbol;Acc:HGNC:28795]
45. CUL5 ENSGALG00000017165 2480 0.898 - - - - - - - 0.898 - - cullin 5 [Source:HGNC Symbol;Acc:HGNC:2556]
46. GNPAT ENSGALG00000011163 4286 0.896 - - - - - - - 0.896 - - glyceronephosphate O-acyltransferase [Source:HGNC Symbol;Acc:HGNC:4416]
47. CLCN7 ENSGALG00000030826 3173 0.896 - - - - - - - 0.896 - - chloride voltage-gated channel 7 [Source:NCBI gene;Acc:416656]
48. OSR1 ENSGALG00000016473 1202 0.895 - - - - - - - 0.895 - - odd-skipped related transciption factor 1 [Source:HGNC Symbol;Acc:HGNC:8111]
49. LSMD1 LSMD1 2562 0.894 - - - - - - - 0.894 - -
50. CLUAP1 ENSGALG00000030877 4269 0.894 - - - - - - - 0.894 - - clusterin associated protein 1 [Source:NCBI gene;Acc:426077]
51. USP12P1 USP12P1 4193 0.893 - - - - - - - 0.893 - -
52. SURF1 ENSGALG00000033754 2130 0.893 - - - - - - - 0.893 - - SURF1, cytochrome c oxidase assembly factor [Source:NCBI gene;Acc:417157]
53. ZBED4 ENSGALG00000032659 5313 0.892 - - - - - - - 0.892 - - zinc finger BED-type containing 4 [Source:NCBI gene;Acc:417734]
54. NUP88 ENSGALG00000032280 9847 0.891 - - - - - - - 0.891 - - nucleoporin 88 [Source:HGNC Symbol;Acc:HGNC:8067]
55. CMTM7 ENSGALG00000011488 1406 0.891 - - - - - - - 0.891 - - CKLF like MARVEL transmembrane domain containing 7 [Source:NCBI gene;Acc:420666]
56. MICU1 ENSGALG00000004372 1978 0.89 - - - - - - - 0.890 - - mitochondrial calcium uptake 1 [Source:HGNC Symbol;Acc:HGNC:1530]
57. ZBTB24 ENSGALG00000015231 1384 0.89 - - - - - - - 0.890 - - zinc finger and BTB domain containing 24 [Source:HGNC Symbol;Acc:HGNC:21143]
58. ATXN2 ENSGALG00000004625 6306 0.889 - - - - - - - 0.889 - - ataxin 2 [Source:HGNC Symbol;Acc:HGNC:10555]
59. WDYHV1 ENSGALG00000030059 2961 0.889 - - - - - - - 0.889 - - WDYHV motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25490]
60. ENSGALG00000017324 ENSGALG00000017324 8235 0.889 - - - - - - - 0.889 - -
61. POLR1C ENSGALG00000010349 7059 0.888 - - - - - - - 0.888 - - RNA polymerase I and III subunit C [Source:NCBI gene;Acc:421452]
62. PARPBP ENSGALG00000012756 1895 0.888 - - - - - - - 0.888 - - PARP1 binding protein [Source:NCBI gene;Acc:418092]
63. ENSGALG00000009863 ENSGALG00000009863 7375 0.888 - - - - - - - 0.888 - -
64. FBXW5 ENSGALG00000030831 5927 0.888 - - - - - - - 0.888 - - F-box and WD repeat domain containing 5 [Source:NCBI gene;Acc:417289]
65. ENSGALG00000014375 ENSGALG00000014375 4741 0.887 - - - - - - - 0.887 - -
66. TMA16 ENSGALG00000009501 6651 0.886 - - - - - - - 0.886 - - translation machinery associated 16 homolog [Source:HGNC Symbol;Acc:HGNC:25638]
67. GOLPH3 ENSGALG00000028267 9692 0.885 - - - - - - - 0.885 - - golgi phosphoprotein 3, transcript variant X1
68. MST4 MST4 1931 0.885 - - - - - - - 0.885 - -
69. SMARCD2 ENSGALG00000029304 11867 0.885 - - - - - - - 0.885 - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 [Source:HGNC Symbol;Acc:HGNC:11107]
70. AP3D1 ENSGALG00000000996 16143 0.885 - - - - - - - 0.885 - - adaptor related protein complex 3 delta 1 subunit, transcript variant X2
71. KIF25 ENSGALG00000011299 2601 0.885 - - - - - - - 0.885 - - kinesin family member 25 [Source:HGNC Symbol;Acc:HGNC:6390]
72. XRCC3 ENSGALG00000011533 3768 0.885 - - - - - - - 0.885 - - X-ray repair cross complementing 3 [Source:NCBI gene;Acc:423485]
73. ESRRG ENSGALG00000009645 2783 0.884 - - - - - - - 0.884 - - estrogen related receptor gamma [Source:NCBI gene;Acc:421357]
74. OFD1 ENSGALG00000016576 1916 0.884 - - - - - - - 0.884 - - OFD1, centriole and centriolar satellite protein [Source:HGNC Symbol;Acc:HGNC:2567]
75. FAM206A ENSGALG00000019524 7170 0.884 - - - - - - - 0.884 - - family with sequence similarity 206 member A [Source:NCBI gene;Acc:420983]
76. FAF1 ENSGALG00000010536 1522 0.883 - - - - - - - 0.883 - - Fas associated factor 1 [Source:HGNC Symbol;Acc:HGNC:3578]
77. MKP3 MKP3 4418 0.882 - - - - - - - 0.882 - -
78. MRPL39 ENSGALG00000015742 7025 0.882 - - - - - - - 0.882 - - mitochondrial ribosomal protein L39 [Source:HGNC Symbol;Acc:HGNC:14027]
79. NUDT4 ENSGALG00000011285 2998 0.881 - - - - - - - 0.881 - - nudix hydrolase 4, transcript variant X5
80. TTPAL ENSGALG00000004244 2734 0.881 - - - - - - - 0.881 - - alpha tocopherol transfer protein like [Source:NCBI gene;Acc:419197]
81. NAPEPLD ENSGALG00000008285 1295 0.879 - - - - - - - 0.879 - - N-acyl phosphatidylethanolamine phospholipase D [Source:NCBI gene;Acc:417719]
82. RGN ENSGALG00000016724 3184 0.878 - - - - - - - 0.878 - - regucalcin [Source:NCBI gene;Acc:395480]
83. GTF2H4 GTF2H4 5227 0.878 - - - - - - - 0.878 - -
84. ATG2B ENSGALG00000042088 918 0.877 - - - - - - - 0.877 - - autophagy related 2B [Source:HGNC Symbol;Acc:HGNC:20187]
85. POLD3 ENSGALG00000017307 2136 0.877 - - - - - - - 0.877 - - DNA polymerase delta 3, accessory subunit [Source:NCBI gene;Acc:419053]
86. PRRG1 ENSGALG00000016266 3473 0.875 - - - - - - - 0.875 - - proline rich and Gla domain 1 [Source:NCBI gene;Acc:418582]
87. ZMYM3 ENSGALG00000005533 2927 0.874 - - - - - - - 0.874 - - zinc finger MYM-type containing 3 [Source:HGNC Symbol;Acc:HGNC:13054]
88. CENPI ENSGALG00000005038 2608 0.873 - - - - - - - 0.873 - - centromere protein I [Source:NCBI gene;Acc:395207]
89. VWF ENSGALG00000017272 1012 0.873 - - - - - - - 0.873 - - Gallus gallus von Willebrand factor (VWF), mRNA. [Source:RefSeq mRNA;Acc:NM_001318464]
90. LGALS1_1 ENSGALG00000012420 1560 0.872 - - - - - - - 0.872 - - galectin 1 [Source:NCBI gene;Acc:396491]
91. SUV420H1 SUV420H1 2361 0.871 - - - - - - - 0.871 - -
92. MACF1 ENSGALG00000003693 1043 0.87 - - - - - - - 0.870 - - microtubule-actin crosslinking factor 1 [Source:HGNC Symbol;Acc:HGNC:13664]
93. ENSGALG00000003847 ENSGALG00000003847 1220 0.87 - - - - - - - 0.870 - -
94. ZNF652 ENSGALG00000001279 1188 0.87 - - - - - - - 0.870 - - zinc finger protein 652 [Source:HGNC Symbol;Acc:HGNC:29147]
95. STAU2 ENSGALG00000031390 2008 0.87 - - - - - - - 0.870 - - staufen double-stranded RNA binding protein 2 [Source:NCBI gene;Acc:420184]
96. PPP1CB ENSGALG00000010026 6909 0.869 - - - - - - - 0.869 - - protein phosphatase 1 catalytic subunit beta [Source:NCBI gene;Acc:396019]
97. NF1 ENSGALG00000005660 1610 0.869 - - - - - - - 0.869 - - neurofibromin 1 [Source:HGNC Symbol;Acc:HGNC:7765]
98. TAF1B ENSGALG00000016437 2318 0.868 - - - - - - - 0.868 - - TATA-box binding protein associated factor, RNA polymerase I subunit B [Source:NCBI gene;Acc:421933]
99. TNNC1 ENSGALG00000001459 7110 0.867 - - - - - - - 0.867 - - troponin C1, slow skeletal and cardiac type [Source:NCBI gene;Acc:396032]
100. TRAFD1 ENSGALG00000043208 1009 0.866 - - - - - - - 0.866 - - TRAF-type zinc finger domain containing 1 [Source:NCBI gene;Acc:416884]

There are 591 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA