Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for gga-mir-6558

Gene Name Gene ID Reads Annotation
gga-mir-6558 ENSGALG00000032123 13 gga-mir-6558 [Source:miRBase;Acc:MI0022376]











Genes with expression patterns similar to gga-mir-6558

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. gga-mir-6558 ENSGALG00000032123 13 4 - - 1.000 1.000 - - 1.000 - - 1.000 gga-mir-6558 [Source:miRBase;Acc:MI0022376]
2. MCMBP ENSGALG00000009455 90 1 - - - - - - 1.000 - - - minichromosome maintenance complex binding protein [Source:NCBI gene;Acc:423933]
3. MATN3 ENSGALG00000016478 10 1 - - - - - - 1.000 - - - matrilin 3 [Source:NCBI gene;Acc:395954]
4. PLCL1 ENSGALG00000008113 23 1 - - - - - - 1.000 - - - phospholipase C like 1 (inactive) [Source:HGNC Symbol;Acc:HGNC:9063]
5. ENSGALG00000019221 ENSGALG00000019221 9 1 - - - - - - 1.000 - - -
6. SMTNL1 12 1 - - - - - - 1.000 - - - smoothelin like 1
7. VEPH1 ENSGALG00000009682 51 1 - - - - - - 1.000 - - - ventricular zone expressed PH domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25735]
8. SELP 28 1 - - - - - - 1.000 - - - selectin P, transcript variant X9
9. CUBN ENSGALG00000008704 21 1 - - - - - - 1.000 - - - cubilin [Source:HGNC Symbol;Acc:HGNC:2548]
10. MSL2 ENSGALG00000039294 55 1 - - - - - - 1.000 - - - MSL complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:25544]
11. CCDC148 ENSGALG00000012555 22 1 - - - - - - 1.000 - - - coiled-coil domain containing 148 [Source:HGNC Symbol;Acc:HGNC:25191]
12. CFAP74 ENSGALG00000001288 54 1 - - - - - - 1.000 - - - cilia and flagella associated protein 74 [Source:HGNC Symbol;Acc:HGNC:29368]
13. SYPL1 ENSGALG00000029006 126 1 - - - - - - 1.000 - - - synaptophysin like 1 [Source:NCBI gene;Acc:417708]
14. FAM240B ENSGALG00000021163 6 1 - - - - - - 1.000 - - - family with sequence similarity 240 member B [Source:NCBI gene;Acc:427470]
15. ENSGALG00000001138 ENSGALG00000001138 21 1 - - - - - - 1.000 - - -
16. CACNG3 ENSGALG00000038087 12 1 - - - - - - 1.000 - - - calcium voltage-gated channel auxiliary subunit gamma 3 [Source:NCBI gene;Acc:395378]
17. BRPF3 8 1 - - - - - - 1.000 - - - bromodomain and PHD finger containing, 3, transcript variant X2
18. ENSGALG00000001478 ENSGALG00000001478 23 1 - - - - - - 1.000 - - -
19. TAT ENSGALG00000000893 11 1 - - - - - - 1.000 - - - tyrosine aminotransferase [Source:HGNC Symbol;Acc:HGNC:11573]
20. PACSIN1 ENSGALG00000002802 6 1 - - - - - - 1.000 - - - protein kinase C and casein kinase substrate in neurons 1 [Source:HGNC Symbol;Acc:HGNC:8570]
21. CTNNAL1 ENSGALG00000013207 44 1 - - - - - - 1.000 - - - catenin alpha like 1 [Source:HGNC Symbol;Acc:HGNC:2512]
22. TMCC1 ENSGALG00000008487 65 1 - - - - - - 1.000 - - - transmembrane and coiled-coil domain family 1 [Source:HGNC Symbol;Acc:HGNC:29116]
23. PIK3CG ENSGALG00000008081 5 1 - - - - - - 1.000 - - - phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma [Source:NCBI gene;Acc:417706]
24. CTNND1 ENSGALG00000007330 53 1 - - - - - - 1.000 - - - catenin delta 1 [Source:HGNC Symbol;Acc:HGNC:2515]
25. CYP2W1 ENSGALG00000021238, ENSGALG00000045037 2 1 - - - - - - 1.000 - - - cytochrome P450 family 2 subfamily W member 1, transcript variant X4
26. TGIF2 ENSGALG00000024081 21 1 - - - - - - 1.000 - - - TGFB induced factor homeobox 2 [Source:HGNC Symbol;Acc:HGNC:15764]
27. PCID2 ENSGALG00000016831 57 1 - - - - - - 1.000 - - - PCI domain containing 2 [Source:NCBI gene;Acc:418745]
28. C21orf62 ENSGALG00000040059 5 1 - - - - - - 1.000 - - - chromosome 21 open reading frame 62 [Source:HGNC Symbol;Acc:HGNC:1305]
29. SBSPONL ENSGALG00000005862 129 1 - - - - - - 1.000 - - - somatomedin B and thrombospondin type 1 domain containing like [Source:NCBI gene;Acc:416923]
30. ZDHHC18 ENSGALG00000034910 16 1 - - - - - - 1.000 - - - zinc finger, DHHC-type containing 18 [Source:NCBI gene;Acc:419575]
31. ENSGALG00000000346 ENSGALG00000000346 130 1 - - - - - - 1.000 - - -
32. VSX2 ENSGALG00000033517 30 1 - - - - - - 1.000 - - - visual system homeobox 2 [Source:NCBI gene;Acc:395536]
33. TM6SF2 ENSGALG00000029015 109 1 - - - - - - 1.000 - - - transmembrane 6 superfamily member 2 [Source:HGNC Symbol;Acc:HGNC:11861]
34. CYP17A1 ENSGALG00000008121 227 1 - - - - - - 1.000 - - - cytochrome P450 family 17 subfamily A member 1 [Source:NCBI gene;Acc:425056]
35. ENSGALG00000019156 ENSGALG00000019156 1 1 - - - - - - 1.000 - - -
36. RGR ENSGALG00000002299 17 1 - - - - - - 1.000 - - - retinal G protein coupled receptor [Source:NCBI gene;Acc:423619]
37. CLDN1 ENSGALG00000026862 28 1 - - - - - - 1.000 - - - claudin 1 [Source:NCBI gene;Acc:424910]
38. ENSGALG00000028038 ENSGALG00000028038 9 1 - - - - - - 1.000 - - -
39. CD72 ENSGALG00000005194 1 1 - - - - - - 1.000 - - - CD72 molecule [Source:NCBI gene;Acc:395923]
40. CEP85 ENSGALG00000042624 59 1 - - - - - - 1.000 - - - centrosomal protein 85 [Source:HGNC Symbol;Acc:HGNC:25309]
41. SRD5A2 ENSGALG00000010625 23 1 - - - - - - 1.000 - - - steroid 5 alpha-reductase 2 [Source:HGNC Symbol;Acc:HGNC:11285]
42. VSNL1 ENSGALG00000016464 19 1 - - - - - - 1.000 - - - visinin like 1 [Source:NCBI gene;Acc:396189]
43. DMP1 ENSGALG00000010927 5 1 - - - - - - 1.000 - - - matrix extracellular phosphoglycoprotein [Source:NCBI gene;Acc:395256]
44. MPPED2 ENSGALG00000012136 7 1 - - - - - - 1.000 - - - metallophosphoesterase domain containing 2 [Source:NCBI gene;Acc:421604]
45. SCNN1B ENSGALG00000006202 87 0.931 - - - - - - 0.931 - - - sodium channel epithelial 1 beta subunit [Source:HGNC Symbol;Acc:HGNC:10600]
46. PRKRIR PRKRIR 46 0.924 - - - - - - - - - 0.924
47. CARD8 ENSGALG00000007698 45 0.918 - - - - - - 0.918 - - - caspase recruitment domain family, member 8
48. KIF5C ENSGALG00000012462 167 0.9 - - - - - - 0.900 - - - kinesin family member 5C [Source:NCBI gene;Acc:408046]
49. ACAN ENSGALG00000006725 184 0.897 - - 0.897 - - - - - - - aggrecan [Source:NCBI gene;Acc:395798]
50. MSN ENSGALG00000039615 383 0.883 - - - - - - 0.883 - - - moesin [Source:NCBI gene;Acc:422173]
51. Y Y 51 0.872 - - - - - - 0.872 - - -
52. GTSF1 ENSGALG00000001109 15 0.868 - - - - - - - - - 0.868 gametocyte specific factor 1 [Source:HGNC Symbol;Acc:HGNC:26565]
53. SLC4A5 ENSGALG00000032146 3 0.868 - - - - - - - - - 0.868 solute carrier family 4 member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
54. NMU ENSGALG00000020151 29 0.868 - - - - - - - - - 0.868 neuromedin U [Source:NCBI gene;Acc:422748]
55. HAAO ENSGALG00000009926 6 0.868 - - - - - - - - - 0.868 3-hydroxyanthranilate 3,4-dioxygenase [Source:HGNC Symbol;Acc:HGNC:4796]
56. SLC2A1 ENSGALG00000004889 10 0.868 - - - - - - - - - 0.868 solute carrier family 2 member 1 [Source:NCBI gene;Acc:396130]
57. ENSGALG00000008598 ENSGALG00000008598 2 0.868 - - - - - - - - - 0.868
58. KLHL35 ENSGALG00000017332 1 0.868 - - - - - - - - - 0.868 kelch like family member 35 [Source:HGNC Symbol;Acc:HGNC:26597]
59. AHR2 ENSGALG00000023742 21 0.868 - - - - - - - - - 0.868 Gallus gallus aryl hydrocarbon receptor 2 (AHR2), mRNA. [Source:RefSeq mRNA;Acc:NM_001319008]
60. RHOC ENSGALG00000001569 53 0.868 - - - - - - - - - 0.868 ras homolog family member C [Source:NCBI gene;Acc:395869]
61. ENSGALG00000026135 ENSGALG00000026135 16 0.868 - - - - - - - - - 0.868
62. IL8 ENSGALG00000026098 16 0.868 - - - - - - - - - 0.868 interleukin 8-like 2 [Source:NCBI gene;Acc:396495]
63. VSTM2A ENSGALG00000041764 2 0.868 - - - - - - - - - 0.868 V-set and transmembrane domain containing 2A [Source:HGNC Symbol;Acc:HGNC:28499]
64. LY96 ENSGALG00000032701 18 0.868 - - - - - - - - - 0.868 lymphocyte antigen 96 [Source:HGNC Symbol;Acc:HGNC:17156]
65. ENSGALG00000014502 ENSGALG00000014502 2 0.868 - - - - - - - - - 0.868
66. ENSGALG00000026169 ENSGALG00000026169 30 0.868 - - - - - - - - - 0.868
67. CD38 ENSGALG00000014508 3 0.868 - - - - - - - - - 0.868 CD38 molecule [Source:NCBI gene;Acc:422827]
68. GPR83 ENSGALG00000017212 6 0.868 - - - - - - - - - 0.868 G protein-coupled receptor 83 [Source:NCBI gene;Acc:428093]
69. TLR7 ENSGALG00000016590 6 0.868 - - - - - - - - - 0.868 toll like receptor 7 [Source:NCBI gene;Acc:418638]
70. ANKS3 ENSGALG00000000643 2 0.868 - - - - - - - - - 0.868 ankyrin repeat and sterile alpha motif domain containing 3 [Source:HGNC Symbol;Acc:HGNC:29422]
71. ENSGALG00000019640 ENSGALG00000019640 2 0.868 - - - - - - - - - 0.868
72. CCDC178 6 0.868 - - - - - - - - - 0.868 coiled-coil domain containing 178, transcript variant X3
73. TLR4 ENSGALG00000007001 116 0.868 - - - - - - 0.868 - - - toll like receptor 4 [Source:NCBI gene;Acc:417241]
74. FAM83B ENSGALG00000016299 17 0.865 - - - - - - - - - 0.865 family with sequence similarity 83 member B [Source:HGNC Symbol;Acc:HGNC:21357]
75. ADCYAP1R1 ENSGALG00000005223 114 0.861 - - - - - - 0.861 - - - ADCYAP receptor type I [Source:NCBI gene;Acc:420386]
76. MMP23B ENSGALG00000001392 53 0.856 - - - - - - - - - 0.856 matrix metallopeptidase 23B [Source:HGNC Symbol;Acc:HGNC:7171]
77. SEMA4D ENSGALG00000010697 10 0.853 - - - - - - - - - 0.853 semaphorin 4D [Source:NCBI gene;Acc:396331]
78. PPP1R16B ENSGALG00000003568 25 0.851 - - - - - - 0.851 - - - protein phosphatase 1 regulatory subunit 16B [Source:NCBI gene;Acc:419170]
79. OGDHL ENSGALG00000002266 57 0.851 - - - - - - 0.851 - - - oxoglutarate dehydrogenase like [Source:NCBI gene;Acc:423618]
80. PDE6H ENSGALG00000025735 37 0.851 - - - - - - 0.851 - - - phosphodiesterase 6H [Source:NCBI gene;Acc:378929]
81. UBE2L6 ENSGALG00000046098 393 0.838 - - - - - - 0.838 - - - ubiquitin-conjugating enzyme E2L 6, transcript variant X3
82. SCN4B ENSGALG00000007409 22 0.836 - - - - - - 0.836 - - - sodium voltage-gated channel beta subunit 4 [Source:HGNC Symbol;Acc:HGNC:10592]
83. MECR ENSGALG00000032763 110 0.832 - - - - - - - - - 0.832 mitochondrial trans-2-enoyl-CoA reductase [Source:HGNC Symbol;Acc:HGNC:19691]
84. HHLA2 ENSGALG00000022871 19 0.816 - - 0.816 - - - - - - - HERV-H LTR-associating 2 [Source:HGNC Symbol;Acc:HGNC:4905]
85. THAP1 ENSGALG00000015385 15 0.816 - - 0.816 - - - - - - - THAP domain containing 1 [Source:HGNC Symbol;Acc:HGNC:20856]
86. SLC22A3 ENSGALG00000020002 4 0.816 - - 0.816 - - - - - - - solute carrier family 22 member 3 [Source:HGNC Symbol;Acc:HGNC:10967]
87. DOCK4 ENSGALG00000009480 61 0.816 - - - - - - 0.816 - - - dedicator of cytokinesis 4 [Source:HGNC Symbol;Acc:HGNC:19192]
88. COL3A1 ENSGALG00000035584 39 0.816 - - - - - - 0.816 - - - collagen type III alpha 1 chain [Source:NCBI gene;Acc:396340]
89. COL8A1 ENSGALG00000015253 2505 0.804 - - 0.804 - - - - - - - collagen type VIII alpha 1 chain [Source:NCBI gene;Acc:418378]
90. ZBTB33 ENSGALG00000008611 15 0.802 - - - - - - - - - 0.802 zinc finger and BTB domain containing 33 [Source:HGNC Symbol;Acc:HGNC:16682]
91. PRLL ENSGALG00000009603 30 0.801 - - 0.801 - - - - - - - prolactin-like protein [Source:NCBI gene;Acc:417800]
92. UCP3 ENSGALG00000017316 30 0.798 - - - - - - - - - 0.798 uncoupling protein 3 [Source:NCBI gene;Acc:373896]
93. SMC1B ENSGALG00000014228 19 0.793 - - - - - - - - - 0.793 structural maintenance of chromosomes 1B [Source:HGNC Symbol;Acc:HGNC:11112]
94. SPP2 ENSGALG00000004129 34 0.791 - - - - - - - - - 0.791 secreted phosphoprotein 2 [Source:NCBI gene;Acc:396080]
95. ENSGALG00000027201 ENSGALG00000027201 12 0.79 - - - - - - - - - 0.790
96. FXR FXR 52 0.79 - - - - - - - - - 0.790
97. RYR2 ENSGALG00000010812 95 0.788 - - 0.788 - - - - - - - ryanodine receptor 2 [Source:HGNC Symbol;Acc:HGNC:10484]
98. GIPC3 ENSGALG00000028029 2 0.787 - - - - - - - - - 0.787 GIPC PDZ domain containing family member 3 [Source:HGNC Symbol;Acc:HGNC:18183]
99. LHX1 ENSGALG00000005409 1 0.787 - - - - - - - - - 0.787 LIM homeobox 1 [Source:NCBI gene;Acc:396381]
100. ENSGALG00000025736 ENSGALG00000025736 3 0.787 - - - - - - - - - 0.787

There are 63 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA