Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for gga-mir-2954

Gene Name Gene ID Reads Annotation
gga-mir-2954 ENSGALG00000026107 462 gga-mir-2954 [Source:miRBase;Acc:MI0013634]











Genes with expression patterns similar to gga-mir-2954

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. gga-mir-2954 ENSGALG00000026107 462 7 - 1.000 1.000 1.000 1.000 - 1.000 1.000 - 1.000 gga-mir-2954 [Source:miRBase;Acc:MI0013634]
2. HNF4G ENSGALG00000042621 484 1.597 - - 0.785 - - - - 0.812 - - hepatocyte nuclear factor 4 gamma [Source:HGNC Symbol;Acc:HGNC:5026]
3. SBF2 ENSGALG00000005716 134 1.557 - - 0.845 - - - 0.712 - - - SET binding factor 2 [Source:NCBI gene;Acc:423043]
4. CYGB ENSGALG00000001892 3 1 - - - - - - - - - 1.000 cytoglobin [Source:NCBI gene;Acc:427802]
5. GLT8D2 ENSGALG00000034078 11 1 - - - - - - - - - 1.000 glycosyltransferase 8 domain containing 2 [Source:NCBI gene;Acc:418085]
6. UPRT ENSGALG00000007793 321 0.981 - - - - - - - 0.981 - - uracil phosphoribosyltransferase homolog [Source:NCBI gene;Acc:422327]
7. P2RY1 ENSGALG00000010357 11 0.973 - - - - - - 0.973 - - - purinergic receptor P2Y1 [Source:NCBI gene;Acc:396275]
8. ENSGALG00000020972 ENSGALG00000020972 54 0.96 - - - - - - - 0.960 - -
9. YDJC ENSGALG00000029198 14 0.918 - - 0.918 - - - - - - - YdjC chitooligosaccharide deacetylase homolog [Source:HGNC Symbol;Acc:HGNC:27158]
10. HOXA9 ENSGALG00000028983 9298 0.915 - - 0.915 - - - - - - - homeobox A9 [Source:NCBI gene;Acc:396096]
11. SATB2 ENSGALG00000008135 347 0.912 - - 0.912 - - - - - - - SATB homeobox 2 [Source:NCBI gene;Acc:424063]
12. IKBIP ENSGALG00000026284 31 0.91 - - 0.910 - - - - - - - IKBKB interacting protein [Source:HGNC Symbol;Acc:HGNC:26430]
13. LRRC56 ENSGALG00000041955 16 0.909 - - 0.909 - - - - - - - leucine rich repeat containing 56 [Source:HGNC Symbol;Acc:HGNC:25430]
14. PLAG1 ENSGALG00000015407 17 0.906 - - 0.906 - - - - - - - PLAG1 zinc finger [Source:NCBI gene;Acc:429484]
15. DNAH7 ENSGALG00000007841 32 0.906 - - 0.906 - - - - - - - dynein axonemal heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
16. ENSGALG00000029120 ENSGALG00000029120 73 0.906 - - 0.906 - - - - - - -
17. ENSGALG00000000407 ENSGALG00000000407 32 0.903 - - 0.903 - - - - - - -
18. LHX6 ENSGALG00000001347 7 0.902 - - 0.902 - - - - - - - LIM homeobox 6 [Source:HGNC Symbol;Acc:HGNC:21735]
19. ANKRD42 8 0.902 - - 0.902 - - - - - - - ankyrin repeat domain 42
20. SPTSSBL ENSGALG00000026131 70 0.902 - - 0.902 - - - - - - - serine palmitoyltransferase small subunit B-like, transcript variant X6
21. TSPAN18 ENSGALG00000036901 14 0.9 - - 0.900 - - - - - - - tetraspanin 18 [Source:NCBI gene;Acc:395586]
22. TMEM230 ENSGALG00000036876 55 0.899 - - 0.899 - - - - - - - transmembrane protein 230 [Source:NCBI gene;Acc:419518]
23. PSMD4 ENSGALG00000028505 16 0.898 - - 0.898 - - - - - - - proteasome 26S subunit, non-ATPase 4 [Source:NCBI gene;Acc:100216364]
24. ENSGALG00000026975 ENSGALG00000026975 8 0.896 - - 0.896 - - - - - - -
25. SLCO4C1 ENSGALG00000026768 30 0.891 - - 0.891 - - - - - - - solute carrier organic anion transporter family member 4C1, transcript variant X4
26. ZBTB21 ENSGALG00000016147 13 0.887 - - 0.887 - - - - - - - zinc finger and BTB domain containing 21 [Source:HGNC Symbol;Acc:HGNC:13083]
27. TRABD2A ENSGALG00000026395 704 0.884 - - - - - - - 0.884 - - TraB domain containing 2A, transcript variant X3
28. TREM-B1 ENSGALG00000003361 8 0.878 - - - - - - - 0.878 - - triggering receptor expressed on myeloid cells B1 [Source:NCBI gene;Acc:768535]
29. GABRA5 ENSGALG00000016744 12 0.878 - - - - - - - 0.878 - - gamma-aminobutyric acid type A receptor alpha5 subunit [Source:HGNC Symbol;Acc:HGNC:4079]
30. ENSGALG00000023027 ENSGALG00000023027 5 0.878 - - - - - - - 0.878 - -
31. SPATA4 ENSGALG00000010822 4 0.878 - - - - - - - 0.878 - - spermatogenesis associated 4 [Source:NCBI gene;Acc:422571]
32. ACACB 6 0.878 - - - - - - - 0.878 - - acetyl-CoA carboxylase beta
33. GTPBP6 ENSGALG00000016717 17 0.878 - - - - - - - 0.878 - - GTP binding protein 6 (putative) [Source:HGNC Symbol;Acc:HGNC:30189]
34. MUC13 7 0.878 - - - - - - - 0.878 - - mucin 13, cell surface associated, transcript variant X10
35. ALKBH3 ENSGALG00000041309 7 0.878 - - - - - - - 0.878 - - alkB homolog 3, alpha-ketoglutaratedependent dioxygenase [Source:NCBI gene;Acc:423169]
36. snoZ39 snoZ39 2 0.878 - - - - - - - 0.878 - -
37. DBN1 ENSGALG00000033405 216 0.878 - - - - - - - 0.878 - - drebrin 1 [Source:NCBI gene;Acc:396496]
38. FAM214B ENSGALG00000002069, ENSGALG00000038279 213 0.878 - - - - - - - 0.878 - - family with sequence similarity 214 member B, transcript variant X14
39. CDHR1 ENSGALG00000002314 24 0.878 - - - - - - - 0.878 - - cadherin related family member 1 [Source:NCBI gene;Acc:414847]
40. GP5 ENSGALG00000045125 3 0.878 - - - - - - - 0.878 - - glycoprotein V platelet [Source:HGNC Symbol;Acc:HGNC:4443]
41. GSAP ENSGALG00000008312 12 0.878 - - - - - - - 0.878 - - gamma-secretase activating protein [Source:HGNC Symbol;Acc:HGNC:28042]
42. SLC30A8 ENSGALG00000034377 3 0.878 - - - - - - - 0.878 - - solute carrier family 30 member 8 [Source:HGNC Symbol;Acc:HGNC:20303]
43. CD101 12 0.878 - - - - - - - 0.878 - - CD101 molecule, transcript variant X4
44. ENSGALG00000023353 ENSGALG00000023353 1 0.878 - - - - - - - 0.878 - -
45. HBP1 ENSGALG00000008050 19 0.878 - - - - - - - 0.878 - - HMG-box transcription factor 1 [Source:NCBI gene;Acc:417705]
46. SOX10 ENSGALG00000012290 3942 0.878 - - - - - - - 0.878 - - SRY-box 10 [Source:NCBI gene;Acc:395573]
47. ENSGALG00000028652 ENSGALG00000028652 65 0.878 - - - - - - - 0.878 - -
48. HCRT ENSGALG00000011485 62 0.878 - - - - - - 0.878 - - - hypocretin neuropeptide precursor [Source:NCBI gene;Acc:374005]
49. SUSD1 ENSGALG00000015677 12 0.878 - - - - - - - 0.878 - - sushi domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25413]
50. C1orf228 3 0.878 - - - - - - - 0.878 - - chromosome 1 open reading frame 228, transcript variant X5
51. SFT2D2 ENSGALG00000019228 10 0.878 - - - - - - - 0.878 - - SFT2 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25140]
52. GPR17 ENSGALG00000037153 3 0.878 - - - - - - - 0.878 - - G protein-coupled receptor 17 [Source:HGNC Symbol;Acc:HGNC:4471]
53. BKJ ENSGALG00000030478, ENSGALG00000031115, ENSGALG00000032838, ENSGALG00000035763, ENSGALG00000038477, ENSGALG00000039526, ENSGALG00000041545 14 0.877 - - - 0.877 - - - - - - beta-keratin related protein, transcript variant X1
54. CYP3A4 ENSGALG00000004436 75 0.876 - - 0.876 - - - - - - - Gallus gallus cytochrome P450 family 3 subfamily A member 4 (CYP3A4), mRNA. [Source:RefSeq mRNA;Acc:NM_001329508]
55. KIAA1377 KIAA1377 48 0.875 - - - - - - - 0.875 - -
56. SWAP70 ENSGALG00000005750 32 0.874 - - - - - - - 0.874 - - switching B cell complex subunit SWAP70 [Source:NCBI gene;Acc:423044]
57. GABRA2 ENSGALG00000014206 19 0.872 - - - - - - - 0.872 - - gamma-aminobutyric acid type A receptor alpha2 subunit [Source:HGNC Symbol;Acc:HGNC:4076]
58. ENSGALG00000006278 ENSGALG00000006278 202 0.872 - - 0.872 - - - - - - -
59. PDCD6IP ENSGALG00000033500 580 0.872 - - 0.872 - - - - - - - programmed cell death 6 interacting protein [Source:NCBI gene;Acc:420725]
60. ENSGALG00000021882 ENSGALG00000021882 63 0.87 - - 0.870 - - - - - - -
61. MMP9 ENSGALG00000006992 78 0.868 - - 0.868 - - - - - - - matrix metallopeptidase 9 [Source:NCBI gene;Acc:395387]
62. MDM2 ENSGALG00000009942 397 0.867 - - 0.867 - - - - - - - MDM2 proto-oncogene [Source:NCBI gene;Acc:395609]
63. PRKCZ ENSGALG00000001270 12 0.867 - - 0.867 - - - - - - - protein kinase C zeta [Source:HGNC Symbol;Acc:HGNC:9412]
64. FNDC7 ENSGALG00000001983 24 0.866 - - 0.866 - - - - - - - fibronectin type III domain containing 7 [Source:HGNC Symbol;Acc:HGNC:26668]
65. MYT1L ENSGALG00000016384 147 0.864 - - 0.864 - - - - - - - myelin transcription factor 1 like [Source:HGNC Symbol;Acc:HGNC:7623]
66. TMEM159 ENSGALG00000027173 67 0.863 - - 0.863 - - - - - - - transmembrane protein 159 [Source:HGNC Symbol;Acc:HGNC:30136]
67. PTBP3 ENSGALG00000015669 16 0.862 - - - - - - - 0.862 - - polypyrimidine tract binding protein 3 [Source:HGNC Symbol;Acc:HGNC:10253]
68. INSC ENSGALG00000032558 74 0.861 - - - - - - - 0.861 - - INSC, spindle orientation adaptor protein [Source:HGNC Symbol;Acc:HGNC:33116]
69. PRKRIR PRKRIR 46 0.861 - - - - - - - 0.861 - -
70. TOM1L2 ENSGALG00000004902 89 0.857 - - - - - - - 0.857 - - target of myb1 like 2 membrane trafficking protein [Source:NCBI gene;Acc:416509]
71. B3GNTL1 ENSGALG00000001433 22 0.857 - - 0.857 - - - - - - - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1 [Source:HGNC Symbol;Acc:HGNC:21727]
72. SAMSN1 ENSGALG00000040926 88 0.855 - - 0.855 - - - - - - - SAM domain, SH3 domain and nuclear localization signals 1 [Source:NCBI gene;Acc:418470]
73. LCOR ENSGALG00000028512 30 0.854 - - 0.854 - - - - - - - ligand dependent nuclear receptor corepressor, transcript variant X16
74. UBE3C ENSGALG00000006461 57 0.854 - - 0.854 - - - - - - - ubiquitin protein ligase E3C [Source:NCBI gene;Acc:420447]
75. FAT3 ENSGALG00000017229 141 0.853 - - 0.853 - - - - - - - FAT atypical cadherin 3 [Source:NCBI gene;Acc:395167]
76. SRRL ENSGALG00000002638 26 0.852 - - - - - - - 0.852 - - serine racemase-like, transcript variant X8
77. NMRAL1 ENSGALG00000029820 29 0.852 - - - - - - - 0.852 - - NmrA like redox sensor 1 [Source:NCBI gene;Acc:416672]
78. SUSD4 ENSGALG00000009388 48 0.849 - - 0.849 - - - - - - - sushi domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25470]
79. SPSB3 ENSGALG00000002285 1329 0.848 - - 0.848 - - - - - - - splA/ryanodine receptor domain and SOCS box containing 3 [Source:HGNC Symbol;Acc:HGNC:30629]
80. NMRK1 ENSGALG00000015156 88 0.847 - - 0.847 - - - - - - - nicotinamide riboside kinase 1 [Source:HGNC Symbol;Acc:HGNC:26057]
81. TPST2 ENSGALG00000005626 945 0.846 - - 0.846 - - - - - - - tyrosylprotein sulfotransferase 2 [Source:NCBI gene;Acc:416910]
82. CNTF ENSGALG00000026207 47 0.846 - - 0.846 - - - - - - - ciliary neurotrophic factor [Source:NCBI gene;Acc:396488]
83. PLEKHJ1 ENSGALG00000000835 55 0.844 - - 0.844 - - - - - - - pleckstrin homology domain containing J1 [Source:NCBI gene;Acc:428324]
84. XYLT1 ENSGALG00000006757 169 0.844 - - 0.844 - - - - - - - xylosyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:15516]
85. REEP2 ENSGALG00000017365 338 0.844 - - 0.844 - - - - - - - receptor accessory protein 2 [Source:HGNC Symbol;Acc:HGNC:17975]
86. KIF9 ENSGALG00000005517 70 0.843 - - 0.843 - - - - - - - kinesin family member 9 [Source:HGNC Symbol;Acc:HGNC:16666]
87. KIAA1549 ENSGALG00000012796 60 0.841 - - 0.841 - - - - - - - KIAA1549 [Source:HGNC Symbol;Acc:HGNC:22219]
88. C1orf131 C1orf131 141 0.841 - - 0.841 - - - - - - -
89. PPARGC1A ENSGALG00000042851 364 0.84 - - 0.840 - - - - - - - PPARG coactivator 1 alpha [Source:NCBI gene;Acc:422815]
90. WDR48 ENSGALG00000006052 3575 0.84 - - 0.840 - - - - - - - WD repeat domain 48 [Source:NCBI gene;Acc:420427]
91. SUPT20H ENSGALG00000017047 59 0.838 - - 0.838 - - - - - - - SPT20 homolog, SAGA complex component [Source:NCBI gene;Acc:418896]
92. ZP1 ENSGALG00000031916 122 0.837 - - - - - - - 0.837 - - zona pellucida glycoprotein 1 [Source:NCBI gene;Acc:395418]
93. HECTD2 ENSGALG00000038043 177 0.837 - - - - - - - 0.837 - - HECT domain E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:26736]
94. URB2 ENSGALG00000011101 12 0.837 - - - - - - - 0.837 - - URB2 ribosome biogenesis 2 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:28967]
95. DSG2 ENSGALG00000015142 67 0.836 - - 0.836 - - - - - - - desmoglein 2 [Source:HGNC Symbol;Acc:HGNC:3049]
96. CHGB ENSGALG00000046616 357 0.835 - - - - - - - 0.835 - - chromogranin B [Source:HGNC Symbol;Acc:HGNC:1930]
97. OTOP1 ENSGALG00000030356 95 0.834 - - - - - - - - - 0.834 otopetrin 1 [Source:HGNC Symbol;Acc:HGNC:19656]
98. DINB1 DINB1 113 0.834 - - 0.834 - - - - - - -
99. MAP3K13 ENSGALG00000006655 632 0.834 - - - - - - - 0.834 - - mitogen-activated protein kinase kinase kinase 13 [Source:HGNC Symbol;Acc:HGNC:6852]
100. ROGDI ENSGALG00000001841 313 0.833 - - 0.833 - - - - - - - rogdi homolog [Source:HGNC Symbol;Acc:HGNC:29478]

There are 206 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA