Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for gabrb3

Gene Name Gene ID Reads Annotation
gabrb3 ENSDARG00000023771, ENSDARG00000114822 180 gamma-aminobutyric acid (GABA) A receptor, beta 3 [Source:ZFIN;Acc:ZDB-GENE-101102-2]










Genes with expression patterns similar to gabrb3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. gabrb3 ENSDARG00000023771, ENSDARG00000114822 180 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 gamma-aminobutyric acid (GABA) A receptor, beta 3 [Source:ZFIN;Acc:ZDB-GENE-101102-2]
2. fez1 ENSDARG00000023174 701 3.409 0.923 1.000 - - - 0.722 0.764 - - fasciculation and elongation protein zeta 1 (zygin I) [Source:ZFIN;Acc:ZDB-GENE-040426-2723]
3. st6gal1 ENSDARG00000044514 142 2.841 0.954 1.000 - - - 0.887 - - - ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 [Source:ZFIN;Acc:ZDB-GENE-060322-3]
4. si:dkey-100n10.2 101 2.792 0.882 1.000 - - - 0.910 - - - si:dkey-100n10.2
5. BX470131.1 BX470131.1 86 2.653 - 1.000 - - - 0.943 0.710 - -
6. cacng2a ENSDARG00000032565 99 2.579 0.817 1.000 - - - - 0.762 - - calcium channel, voltage-dependent, gamma subunit 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1401]
7. scg2b ENSDARG00000038574 345 2.568 0.774 1.000 - - - 0.794 - - - secretogranin II (chromogranin C), b [Source:ZFIN;Acc:ZDB-GENE-061103-160]
8. nrxn2a ENSDARG00000061454 291 2.55 0.900 - - - - 0.926 0.724 - - neurexin 2a [Source:ZFIN;Acc:ZDB-GENE-070206-5]
9. slc1a1 ENSDARG00000020212 104 2.548 0.915 - - - - 0.760 0.873 - - solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 [Source:ZFIN;Acc:ZDB-GENE-040718-414]
10. sncgb ENSDARG00000109715 1014 2.474 0.954 - - - - 0.757 0.763 - - synuclein, gamma b (breast cancer-specific protein 1) [Source:ZFIN;Acc:ZDB-GENE-050522-235]
11. ROBO3_1 ROBO3_1 468 2.452 - 0.893 - - - 0.848 0.711 - -
12. syt13 ENSDARG00000012306 298 2.443 0.850 - - - - 0.876 0.717 - - synaptotagmin XIII [Source:ZFIN;Acc:ZDB-GENE-050417-135]
13. ndrg4 ENSDARG00000103937 1234 2.427 0.856 - - - - 0.826 0.745 - - NDRG family member 4 [Source:ZFIN;Acc:ZDB-GENE-060512-226]
14. MAP1A MAP1A 847 2.39 0.904 - - - - 0.734 0.752 - -
15. SGIP1 SGIP1 236 2.37 0.775 - - - - 0.752 0.843 - -
16. stmn2a ENSDARG00000033234 2272 2.364 0.816 - - - - 0.834 0.714 - - stathmin 2a [Source:ZFIN;Acc:ZDB-GENE-041010-85]
17. atp6v1b2 ENSDARG00000043465, ENSDARG00000113422 682 2.359 0.785 - - - - 0.812 0.762 - - ATPase H+ transporting V1 subunit B2 [Source:ZFIN;Acc:ZDB-GENE-030711-4]
18. phyhipla ENSDARG00000003998, ENSDARG00000115785 262 2.339 0.903 0.728 - - - 0.708 - - - phytanoyl-CoA 2-hydroxylase interacting protein-like a [Source:ZFIN;Acc:ZDB-GENE-061215-64]
19. olfm1b ENSDARG00000014053 1392 2.339 0.937 - - - - 0.701 0.701 - - olfactomedin 1b [Source:ZFIN;Acc:ZDB-GENE-040801-228]
20. cadm3 ENSDARG00000057013 1545 2.334 0.766 - - - - 0.741 0.827 - - cell adhesion molecule 3 [Source:ZFIN;Acc:ZDB-GENE-060512-196]
21. BX957337.1 BX957337.1 1685 2.299 0.738 - - - - 0.855 0.706 - -
22. nkx1.2lb ENSDARG00000099427 220 2.284 0.709 - - - - 0.748 0.827 - - NK1 transcription factor related 2-like,b [Source:ZFIN;Acc:ZDB-GENE-040615-2]
23. si:ch211-11c15.3 si:ch211-11c15.3 1279 2.259 0.738 - - - - 0.773 0.748 - -
24. SV2B SV2B 208 2.192 0.703 - - - - 0.727 0.762 - -
25. amph ENSDARG00000007663 599 2.181 0.731 - - - - 0.711 0.739 - - amphiphysin [Source:ZFIN;Acc:ZDB-GENE-040426-1711]
26. rims1a ENSDARG00000074680 143 1.954 - 1.000 - - - 0.954 - - - regulating synaptic membrane exocytosis 1a [Source:ZFIN;Acc:ZDB-GENE-090312-135]
27. tmem178 ENSDARG00000020758 77 1.932 - 1.000 - - - 0.932 - - - transmembrane protein 178 [Source:ZFIN;Acc:ZDB-GENE-060929-756]
28. jagn1a ENSDARG00000041071, ENSDARG00000109427 397 1.92 0.952 - - - - 0.968 - - - jagunal homolog 1a [Source:ZFIN;Acc:ZDB-GENE-041010-80]
29. RAPGEF4 ENSDARG00000079872 82 1.903 0.903 1.000 - - - - - - - Rap guanine nucleotide exchange factor (GEF) 4 [Source:ZFIN;Acc:ZDB-GENE-070912-385]
30. kctd16a ENSDARG00000004648, ENSDARG00000114292, ENSDARG00000117199 80 1.9 0.931 - - - - 0.969 - - - potassium channel tetramerization domain containing 16a [Source:ZFIN;Acc:ZDB-GENE-060117-1]
31. kcna1 kcna1 174 1.896 0.896 1.000 - - - - - - -
32. TMEM57 TMEM57 260 1.88 - 1.000 - - - 0.880 - - -
33. cdk5r1a ENSDARG00000037916 46 1.873 - 1.000 - - - - 0.873 - - cyclin-dependent kinase 5, regulatory subunit 1a (p35) [Source:ZFIN;Acc:ZDB-GENE-080723-17]
34. cldnd ENSDARG00000006580 17 1.873 - 1.000 - - - - 0.873 - - claudin d [Source:ZFIN;Acc:ZDB-GENE-010328-4]
35. plscr3a ENSDARG00000093078 7 1.873 - 1.000 - - - - 0.873 - - phospholipid scramblase 3a [Source:ZFIN;Acc:ZDB-GENE-060531-17]
36. SMARCA4 ENSDARG00000104339 48 1.873 - 1.000 - - - - 0.873 - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 [Source:HGNC Symbol;Acc:HGNC:11100]
37. rassf4 ENSDARG00000012460 43 1.873 - 1.000 - - - - 0.873 - - Ras association (RalGDS/AF-6) domain family member 4 [Source:ZFIN;Acc:ZDB-GENE-050102-3]
38. si:dkey-193c22.1 ENSDARG00000093687 104 1.873 - 1.000 - - - - 0.873 - - si:dkey-193c22.1 [Source:ZFIN;Acc:ZDB-GENE-030131-7957]
39. entpd2b ENSDARG00000044795 7 1.87 - 1.000 - - - 0.870 - - - ectonucleoside triphosphate diphosphohydrolase 2b [Source:ZFIN;Acc:ZDB-GENE-061013-2]
40. TUBB2A TUBB2A 142 1.845 0.937 - - - - 0.908 - - -
41. mir124-6 64 1.834 0.961 - - - - - 0.873 - - microRNA 124-6
42. si:dkey-81p22.11 ENSDARG00000093797 68 1.824 - 1.000 - - - 0.824 - - - si:dkey-81p22.11 [Source:NCBI gene;Acc:100535473]
43. hsp70l_1 ENSDARG00000055723 72 1.822 - 1.000 - - - 0.822 - - - heat shock cognate 70-kd protein, like [Source:ZFIN;Acc:ZDB-GENE-050321-1]
44. evx2 ENSDARG00000059255 317 1.821 0.961 - - - - - 0.860 - - even-skipped homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-980526-215]
45. pycr1 pycr1 1258 1.82 - 1.000 - - - 0.820 - - -
46. erap2 ENSDARG00000098618 16 1.805 - 1.000 - - - - 0.805 - - endoplasmic reticulum aminopeptidase 2 [Source:ZFIN;Acc:ZDB-GENE-080402-6]
47. olfm1a ENSDARG00000018270 107 1.802 - 1.000 - - - 0.802 - - - olfactomedin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-194]
48. GRIN2B GRIN2B 140 1.797 - 1.000 - - - 0.797 - - -
49. CABZ01079192.1 ENSDARG00000101629 23 1.796 - 1.000 - - - 0.796 - - - sucrase-isomaltase (alpha-glucosidase) [Source:NCBI gene;Acc:100148922]
50. kcnd1 ENSDARG00000074746 153 1.786 0.938 - - - - - 0.848 - - potassium voltage-gated channel, Shal-related subfamily, member 1 [Source:ZFIN;Acc:ZDB-GENE-081105-40]
51. pdzd4 175 1.786 - 1.000 - - - - 0.786 - - PDZ domain containing 4, transcript variant X2
52. CABZ01061873.1 CABZ01061873.1 51 1.783 - 0.880 - - - - 0.903 - -
53. KLHL14 ENSDARG00000045275 155 1.776 - - - - - 0.800 0.976 - - kelch-like family member 14 [Source:ZFIN;Acc:ZDB-GENE-091204-223]
54. syt11a ENSDARG00000057913 1145 1.775 0.894 - - - - 0.881 - - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
55. HELZ2_1 ENSDARG00000012600 53 1.76 - 1.000 - - - 0.760 - - - helicase with zinc finger 2 [Source:HGNC Symbol;Acc:HGNC:30021]
56. LMTK3 LMTK3 222 1.757 - 1.000 - - - - 0.757 - -
57. pigf ENSDARG00000032780 7 1.753 - 0.880 - - - - 0.873 - - phosphatidylinositol glycan anchor biosynthesis, class F [Source:ZFIN;Acc:ZDB-GENE-040426-1801]
58. SKOR2 SKOR2 1041 1.748 0.955 - - - - - 0.793 - -
59. pcyt1ba ENSDARG00000058162 206 1.747 0.747 1.000 - - - - - - - phosphate cytidylyltransferase 1, choline, beta a [Source:ZFIN;Acc:ZDB-GENE-061220-4]
60. adcyap1a ENSDARG00000004015 67 1.746 0.873 - - - - - 0.873 - - adenylate cyclase activating polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-020809-4]
61. her3 ENSDARG00000076857 131 1.745 - - - - - 0.872 0.873 - - hairy-related 3 [Source:ZFIN;Acc:ZDB-GENE-980526-204]
62. cyp27a7 ENSDARG00000033802 216 1.738 - 1.000 - - - 0.738 - - - cytochrome P450, family 27, subfamily A, polypeptide 7 [Source:ZFIN;Acc:ZDB-GENE-081104-519]
63. xkr6 xkr6 286 1.736 - - - - - 0.885 0.851 - -
64. LINGO2 LINGO2 300 1.73 - 0.880 - - - 0.850 - - -
65. lhx5 ENSDARG00000057936 785 1.727 - 1.000 - - - 0.727 - - - LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]
66. pcbp3 ENSDARG00000054378 74 1.726 - 1.000 - - - - 0.726 - - poly(rC) binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-050522-157]
67. ZNF337_18 ZNF337_18 152 1.726 0.914 - - - - 0.812 - - -
68. bhlhe22 ENSDARG00000058039 1673 1.725 0.771 0.954 - - - - - - - basic helix-loop-helix family, member e22 [Source:ZFIN;Acc:ZDB-GENE-040426-1411]
69. si:dkey-245p14.4 ENSDARG00000070320 418 1.724 0.849 - - - - 0.875 - - - si:dkey-245p14.4 [Source:ZFIN;Acc:ZDB-GENE-061207-63]
70. BX571949.1 BX571949.1 293 1.724 0.903 - - - - - 0.821 - -
71. zgc:153615 ENSDARG00000038981 105 1.724 - 1.000 - - - - 0.724 - - zgc:153615 [Source:ZFIN;Acc:ZDB-GENE-061110-79]
72. lingo1a ENSDARG00000034165 179 1.724 - - - - - 0.889 0.835 - - leucine rich repeat and Ig domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-080327-16]
73. panx1b ENSDARG00000014910, ENSDARG00000112399 136 1.719 0.719 1.000 - - - - - - - pannexin 1b [Source:ZFIN;Acc:ZDB-GENE-070705-192]
74. atp2b2 ENSDARG00000044902, ENSDARG00000063433 140 1.717 - 1.000 - - - - 0.717 - - ATPase plasma membrane Ca2+ transporting 2 [Source:ZFIN;Acc:ZDB-GENE-061016-1]
75. MAP6 MAP6 643 1.715 0.762 - - - - 0.953 - - -
76. arhgef9a ENSDARG00000061746 58 1.71 - 1.000 - - - - 0.710 - - Cdc42 guanine nucleotide exchange factor (GEF) 9a [Source:ZFIN;Acc:ZDB-GENE-070705-271]
77. ric8a ENSDARG00000007247 229 1.71 - - - - - 0.852 0.858 - - RIC8 guanine nucleotide exchange factor A [Source:ZFIN;Acc:ZDB-GENE-040927-18]
78. adgra1a ENSDARG00000054177 19 1.708 0.835 - - - - - 0.873 - - adhesion G protein-coupled receptor A1a [Source:ZFIN;Acc:ZDB-GENE-130603-101]
79. CAMK1 CAMK1 28 1.708 - - - - - 0.835 0.873 - -
80. cacna2d3 ENSDARG00000078760 211 1.707 0.797 - - - - 0.910 - - - calcium channel, voltage dependent, alpha2/delta subunit 3 [Source:ZFIN;Acc:ZDB-GENE-030616-133]
81. CLIP3 ENSDARG00000054456 734 1.705 0.809 - - - - 0.896 - - - CAP-GLY domain containing linker protein 3 [Source:ZFIN;Acc:ZDB-GENE-131127-193]
82. SSBP2 ENSDARG00000099727 22 1.701 - - - - - 0.828 0.873 - - single-stranded DNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-090312-197]
83. pnoca ENSDARG00000025024 467 1.7 - - - - - 0.864 0.836 - - prepronociceptin a [Source:ZFIN;Acc:ZDB-GENE-101229-1]
84. entpd3 ENSDARG00000035309 263 1.699 - - - - - 0.826 0.873 - - ectonucleoside triphosphate diphosphohydrolase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6186]
85. grik4 ENSDARG00000026753 22 1.697 - - - - - 0.824 0.873 - - glutamate receptor, ionotropic, kainate 4 [Source:ZFIN;Acc:ZDB-GENE-070821-5]
86. PPFIA3 ENSDARG00000077053 310 1.695 0.778 - - - - 0.917 - - - protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 [Source:ZFIN;Acc:ZDB-GENE-100311-3]
87. zgc:162724 zgc:162724 9 1.688 0.961 - - - - - 0.727 - -
88. arl16 ENSDARG00000059498, ENSDARG00000110386 229 1.687 - - - - 0.837 0.850 - - - ADP-ribosylation factor-like 16 [Source:ZFIN;Acc:ZDB-GENE-070410-114]
89. stmn4 ENSDARG00000030106 518 1.684 - - - - - 0.915 0.769 - - stathmin-like 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2732]
90. nrn1a ENSDARG00000071860 1311 1.682 0.821 - - - - 0.861 - - - neuritin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-212]
91. atp6v0a2a ENSDARG00000035538 278 1.681 - - - - - 0.962 0.719 - - ATPase H+ transporting V0 subunit a2a [Source:ZFIN;Acc:ZDB-GENE-091113-4]
92. scdb ENSDARG00000030265 271 1.681 0.933 - - - - 0.748 - - - stearoyl-CoA desaturase b [Source:ZFIN;Acc:ZDB-GENE-050522-12]
93. ppp2r2c ppp2r2c 441 1.679 0.875 - - - - - 0.804 - -
94. cbln1 ENSDARG00000057296 165 1.679 0.787 - - - - 0.892 - - - cerebellin 1 precursor [Source:ZFIN;Acc:ZDB-GENE-040718-226]
95. otpa ENSDARG00000014201 2290 1.676 - - - - - 0.840 0.836 - - orthopedia homeobox a [Source:ZFIN;Acc:ZDB-GENE-070216-1]
96. CNTNAP1 ENSDARG00000074524 73 1.676 - - - - - 0.828 0.848 - - contactin associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-030916-2]
97. zgc:153845 62 1.675 - - - - - 0.802 0.873 - - zgc:153845
98. CU570681.1 CU570681.1 512 1.674 0.919 - - - - - 0.755 - -
99. her4.2_1 ENSDARG00000056729, ENSDARG00000094426 2383 1.673 - 0.826 - - - 0.847 - - - hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
100. TRPC4_1 TRPC4_1 212 1.668 0.871 - - - - 0.797 - - -

There are 1801 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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