Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for fmr1

Gene Name Gene ID Reads Annotation
fmr1 ENSDARG00000037433 5132 fragile X mental retardation 1 [Source:ZFIN;Acc:ZDB-GENE-020731-6]










Genes with expression patterns similar to fmr1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. fmr1 ENSDARG00000037433 5132 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 fragile X mental retardation 1 [Source:ZFIN;Acc:ZDB-GENE-020731-6]
2. gars ENSDARG00000059070 17015 2.558 - 0.882 - - 0.884 - 0.792 - - glycyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9174]
3. cct3 ENSDARG00000016173 15869 2.347 - 0.789 - - 0.814 - 0.744 - - chaperonin containing TCP1, subunit 3 (gamma) [Source:ZFIN;Acc:ZDB-GENE-020419-5]
4. tbc1d23 ENSDARG00000044357, ENSDARG00000109696 6272 1.96 - 0.992 - - 0.968 - - - - TBC1 domain family, member 23 [Source:ZFIN;Acc:ZDB-GENE-040426-1253]
5. sox19a ENSDARG00000010770, ENSDARG00000110497 4683 1.913 - 0.987 - - 0.926 - - - - SRY (sex determining region Y)-box 19a [Source:ZFIN;Acc:ZDB-GENE-980526-102]
6. LDLR LDLR 838 1.897 - 0.984 - - - - - - 0.913
7. NSMCE2 ENSDARG00000076379 2133 1.896 - - 0.981 - - - - - 0.915 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase [Source:ZFIN;Acc:ZDB-GENE-081022-128]
8. ubr4 ENSDARG00000009549 5565 1.883 - 0.936 - - 0.947 - - - - ubiquitin protein ligase E3 component n-recognin 4 [Source:ZFIN;Acc:ZDB-GENE-090313-341]
9. glrx ENSDARG00000028106 16225 1.881 - 0.902 0.979 - - - - - - glutaredoxin (thioltransferase) [Source:ZFIN;Acc:ZDB-GENE-041010-11]
10. mef2d ENSDARG00000040237 6144 1.855 - - 0.978 - - - 0.877 - - myocyte enhancer factor 2d [Source:ZFIN;Acc:ZDB-GENE-990415-164]
11. tnfaip8l2b ENSDARG00000046148 1133 1.817 - 0.985 - - - - - - 0.832 tumor necrosis factor, alpha-induced protein 8-like 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1359]
12. pdcd6ip ENSDARG00000025269 2522 1.816 - - - - 0.970 - - - 0.846 programmed cell death 6 interacting protein [Source:ZFIN;Acc:ZDB-GENE-040426-2678]
13. cops2 ENSDARG00000004785 4911 1.795 - - 0.980 - - - - - 0.815 COP9 signalosome subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040625-15]
14. eif4e1c ENSDARG00000012274, ENSDARG00000116158 4768 1.78 - 0.934 - - - - 0.846 - - eukaryotic translation initiation factor 4E family member 1c [Source:ZFIN;Acc:ZDB-GENE-050417-398]
15. naa10 ENSDARG00000071060, ENSDARG00000111093, ENSDARG00000116173 4657 1.778 - 0.980 - - - - 0.798 - - N(alpha)-acetyltransferase 10, NatA catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-040426-2648]
16. arl6ip1 ENSDARG00000054578, ENSDARG00000112340 11714 1.777 - 0.952 - - - - 0.825 - - ADP-ribosylation factor-like 6 interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1087]
17. dlx3b ENSDARG00000014626 3647 1.768 - - 0.977 - - - - - 0.791 distal-less homeobox 3b [Source:ZFIN;Acc:ZDB-GENE-980526-280]
18. ndufa12 ENSDARG00000042469, ENSDARG00000116793 3843 1.767 - 0.956 - - - - 0.811 - - NADH:ubiquinone oxidoreductase subunit A12 [Source:ZFIN;Acc:ZDB-GENE-050828-1]
19. SLC12A6 SLC12A6 883 1.749 - 0.988 - - - - - - 0.761
20. PHB2 PHB2 3755 1.748 - - - - - 0.996 0.752 - -
21. cdv3 ENSDARG00000023028 12380 1.739 - 0.971 - - - - 0.768 - - carnitine deficiency-associated gene expressed in ventricle 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6034]
22. helz ENSDARG00000030560 3259 1.736 - 0.984 - - - - - - 0.752 helicase with zinc finger [Source:ZFIN;Acc:ZDB-GENE-040426-2419]
23. capza1b ENSDARG00000056090, ENSDARG00000109842, ENSDARG00000110402 12199 1.728 - - - - 0.900 - 0.828 - - capping actin protein of muscle Z-line subunit alpha 1b [Source:ZFIN;Acc:ZDB-GENE-031002-24]
24. eef1db ENSDARG00000030053 5185 1.724 - 0.963 - - - - 0.761 - - eukaryotic translation elongation factor 1 delta b (guanine nucleotide exchange protein) [Source:ZFIN;Acc:ZDB-GENE-030131-6544]
25. zgc:194839 ENSDARG00000078550 4003 1.724 - 0.826 - - - - - - 0.898 zgc:194839 [Source:ZFIN;Acc:ZDB-GENE-081022-153]
26. MRPL51 ENSDARG00000041340, ENSDARG00000113440 1544 1.72 - - - - 0.972 - 0.748 - - mitochondrial ribosomal protein L51 [Source:ZFIN;Acc:ZDB-GENE-050320-40]
27. PDPR ENSDARG00000103288 711 1.714 - 0.990 - - - - 0.724 - - pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
28. ash2l ENSDARG00000060392 4916 1.712 - - 0.979 - - - 0.733 - - ash2 like, histone lysine methyltransferase complex subunit [Source:ZFIN;Acc:ZDB-GENE-030131-494]
29. mrpl14 ENSDARG00000068886 1991 1.706 - - - - - - 0.803 - 0.903 mitochondrial ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-040426-1066]
30. mrps26 ENSDARG00000039719, ENSDARG00000117175 1514 1.706 - 0.989 - - - - 0.717 - - mitochondrial ribosomal protein S26 [Source:ZFIN;Acc:ZDB-GENE-040718-115]
31. slc6a9 ENSDARG00000018534 4089 1.702 0.714 - - - - 0.988 - - - solute carrier family 6 (neurotransmitter transporter, glycine), member 9 [Source:ZFIN;Acc:ZDB-GENE-050105-3]
32. sgcd ENSDARG00000098573 4980 1.701 - 0.932 - - - - 0.769 - - sarcoglycan, delta (dystrophin-associated glycoprotein) [Source:ZFIN;Acc:ZDB-GENE-030131-3684]
33. kifc1 ENSDARG00000001558 6658 1.697 - 0.742 - - 0.955 - - - - kinesin family member C1 [Source:ZFIN;Acc:ZDB-GENE-000208-21]
34. zgc:77086 ENSDARG00000014015 4908 1.692 0.729 - - - 0.963 - - - - zgc:77086 [Source:ZFIN;Acc:ZDB-GENE-040426-2238]
35. rmnd5b ENSDARG00000043359 3054 1.689 - - - - 0.969 - 0.720 - - required for meiotic nuclear division 5 homolog B [Source:ZFIN;Acc:ZDB-GENE-040426-1744]
36. tmx2a ENSDARG00000079122, ENSDARG00000109756 1156 1.685 - 0.979 - - - - 0.706 - - thioredoxin-related transmembrane protein 2a [Source:ZFIN;Acc:ZDB-GENE-050208-95]
37. CABZ01076275.1 ENSDARG00000100753 5137 1.685 - - - - 0.973 - 0.712 - - scavenger receptor class B, member 2b [Source:NCBI gene;Acc:564077]
38. rpl37 ENSDARG00000034291, ENSDARG00000076360 13668 1.685 - - - - 0.884 - 0.801 - - ribosomal protein L37 [Source:ZFIN;Acc:ZDB-GENE-040625-39]
39. acvr1b acvr1b 2963 1.678 - - - - 0.973 0.705 - - -
40. COMP 2018 1.676 - 0.974 - - - - 0.702 - - cartilage oligomeric matrix protein, transcript variant X1
41. slc2a3a ENSDARG00000013295 2449 1.674 - - - - 0.971 0.703 - - - solute carrier family 2 (facilitated glucose transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-040718-390]
42. BX294434.1 ENSDARG00000061272 6493 1.664 - - - - - 0.952 0.712 - - solute carrier family 41 member 1 [Source:NCBI gene;Acc:564564]
43. THEM4 ENSDARG00000061621 364 1.66 - - - - - - 0.751 - 0.909 thioesterase superfamily member 4 [Source:ZFIN;Acc:ZDB-GENE-070112-982]
44. USMG5 USMG5 10356 1.639 - - - - 0.894 - 0.745 - -
45. gstm gstm 4064 1.626 - - - - - - 0.844 - 0.782
46. csrp1a ENSDARG00000006603 5188 1.623 - - - - - 0.709 - - 0.914 cysteine and glycine-rich protein 1a [Source:ZFIN;Acc:ZDB-GENE-030909-4]
47. ube2d3 ENSDARG00000038473 4096 1.621 - - - - - - 0.775 - 0.846 ubiquitin-conjugating enzyme E2D 3 [Source:ZFIN;Acc:ZDB-GENE-030131-551]
48. cdkn1c cdkn1c 17427 1.619 - 0.904 - - 0.715 - - - -
49. atp1a2a ENSDARG00000010472, ENSDARG00000111818, ENSDARG00000115733 6341 1.618 - - - - 0.883 - 0.735 - - ATPase Na+/K+ transporting subunit alpha 2 [Source:ZFIN;Acc:ZDB-GENE-001212-6]
50. prkra ENSDARG00000076718 606 1.613 - - - 0.707 - - - - 0.906 protein kinase, interferon-inducible double stranded RNA dependent activator [Source:ZFIN;Acc:ZDB-GENE-050309-206]
51. psmc4 ENSDARG00000027099, ENSDARG00000109415 6643 1.601 - - - - - - 0.700 - 0.901 proteasome 26S subunit, ATPase 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5083]
52. cox6c ENSDARG00000038577 16845 1.59 - - - - 0.818 - 0.772 - - cytochrome c oxidase subunit 6C [Source:ZFIN;Acc:ZDB-GENE-040724-95]
53. rpl12 ENSDARG00000006691, ENSDARG00000114004, ENSDARG00000115546 8591 1.579 - - - - - - 0.773 - 0.806 ribosomal protein L12 [Source:ZFIN;Acc:ZDB-GENE-030131-5297]
54. eif3ea ENSDARG00000090697 14670 1.57 - 0.861 - - - - 0.709 - - eukaryotic translation initiation factor 3, subunit E, a [Source:ZFIN;Acc:ZDB-GENE-030131-3827]
55. abcf1 ENSDARG00000031795 8635 1.57 - 0.860 - - - - 0.710 - - ATP-binding cassette, sub-family F (GCN20), member 1 [Source:ZFIN;Acc:ZDB-GENE-050517-31]
56. pa2g4a ENSDARG00000039578, ENSDARG00000115881 16166 1.564 - - - - 0.822 - 0.742 - - proliferation-associated 2G4, a [Source:ZFIN;Acc:ZDB-GENE-030616-161]
57. eif2s1b ENSDARG00000052178 11961 1.559 - 0.739 - - - - 0.820 - - eukaryotic translation initiation factor 2, subunit 1 alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-283]
58. cnbpb ENSDARG00000070922 14606 1.553 - - - - 0.831 - 0.722 - - CCHC-type zinc finger, nucleic acid binding protein b [Source:ZFIN;Acc:ZDB-GENE-030131-7782]
59. gdpd3a ENSDARG00000074466 1739 1.548 - 0.839 - - - 0.709 - - - glycerophosphodiester phosphodiesterase domain containing 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2279]
60. marcksl1b ENSDARG00000035715 37390 1.465 0.707 - - - - 0.758 - - - MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
61. epb41l5 ENSDARG00000032324, ENSDARG00000114579 1610 1.463 - - - 0.736 0.727 - - - - erythrocyte membrane protein band 4.1 like 5 [Source:ZFIN;Acc:ZDB-GENE-030616-450]
62. fgf6a ENSDARG00000009351 799 1.454 0.713 - - - - - 0.741 - - fibroblast growth factor 6a [Source:ZFIN;Acc:ZDB-GENE-980526-559]
63. MRPL52 ENSDARG00000090568 4402 1.431 - - - - - 0.708 0.723 - - mitochondrial ribosomal protein L52 [Source:ZFIN;Acc:ZDB-GENE-110325-1]
64. her9 ENSDARG00000056438, ENSDARG00000115775 3099 1.423 0.710 - - - - 0.713 - - - hairy-related 9 [Source:ZFIN;Acc:ZDB-GENE-011213-1]
65. efemp2a ENSDARG00000094324 39261 1.413 - - - - - 0.712 0.701 - - EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
66. fbxw5 ENSDARG00000099139 2802 1.41 - - - - - 0.706 0.704 - - F-box and WD repeat domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2571]
67. si:ch211-114n24.7 si:ch211-114n24.7 2544 1.405 - - - - - 0.702 0.703 - -
68. zgc:101858 ENSDARG00000035129 1393 0.996 - 0.996 - - - - - - - zgc:101858 [Source:ZFIN;Acc:ZDB-GENE-040927-13]
69. grpel1 ENSDARG00000010021 3055 0.996 - - - - - 0.996 - - - GrpE-like 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-051120-111]
70. CU571336.1 ENSDARG00000099892 2164 0.996 - - - - - 0.996 - - -
71. CNOT2 ENSDARG00000061802 1500 0.995 - 0.995 - - - - - - - CCR4-NOT transcription complex, subunit 2 [Source:ZFIN;Acc:ZDB-GENE-070410-70]
72. nfil3 ENSDARG00000042977, ENSDARG00000110085 1565 0.995 - 0.995 - - - - - - - nuclear factor, interleukin 3 regulated [Source:ZFIN;Acc:ZDB-GENE-040822-28]
73. ost4 ENSDARG00000096118 7679 0.994 - - 0.994 - - - - - - oligosaccharyltransferase complex subunit 4 (non-catalytic) [Source:ZFIN;Acc:ZDB-GENE-110307-1]
74. akirin2 ENSDARG00000058729 13245 0.993 - 0.993 - - - - - - - akirin 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2944]
75. fmnl2b ENSDARG00000075041 1744 0.992 - - - - 0.992 - - - - formin-like 2b [Source:ZFIN;Acc:ZDB-GENE-041111-182]
76. ptp4a2 ptp4a2 3196 0.992 - 0.992 - - - - - - -
77. NRD1 NRD1 3486 0.991 - - - - 0.991 - - - -
78. gtf2f1 ENSDARG00000032129 3041 0.991 - 0.991 - - - - - - - general transcription factor IIF, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4557]
79. kctd15a ENSDARG00000045893 1272 0.991 - 0.991 - - - - - - - potassium channel tetramerization domain containing 15a [Source:ZFIN;Acc:ZDB-GENE-041010-105]
80. tgfb3 ENSDARG00000019367 2327 0.991 - 0.991 - - - - - - - transforming growth factor, beta 3 [Source:ZFIN;Acc:ZDB-GENE-030723-4]
81. zgc:113208 ENSDARG00000035610, ENSDARG00000109302 1095 0.991 - 0.991 - - - - - - - zgc:113208 [Source:ZFIN;Acc:ZDB-GENE-050417-450]
82. znf395a ENSDARG00000060113 3874 0.991 - 0.991 - - - - - - - zinc finger protein 395a [Source:ZFIN;Acc:ZDB-GENE-061215-52]
83. C9H2orf15 C9H2orf15 1975 0.991 - 0.991 - - - - - - -
84. pdap1b ENSDARG00000002967 2159 0.991 - 0.991 - - - - - - - pdgfa associated protein 1b [Source:ZFIN;Acc:ZDB-GENE-040426-942]
85. uck2a ENSDARG00000006074 1554 0.99 - 0.990 - - - - - - - uridine-cytidine kinase 2a [Source:ZFIN;Acc:ZDB-GENE-030131-7158]
86. atoh8 ENSDARG00000037555, ENSDARG00000110248 2059 0.99 - 0.990 - - - - - - - atonal bHLH transcription factor 8 [Source:ZFIN;Acc:ZDB-GENE-061215-7]
87. SLC6A16_1 SLC6A16_1 1130 0.99 - 0.990 - - - - - - -
88. gle1 ENSDARG00000043559 1362 0.99 - 0.990 - - - - - - - GLE1 RNA export mediator homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040831-4]
89. rhoj ENSDARG00000020250 1522 0.99 - 0.990 - - - - - - - ras homolog family member J [Source:ZFIN;Acc:ZDB-GENE-040724-272]
90. rae1 ENSDARG00000007196, ENSDARG00000113905 3321 0.99 - 0.990 - - - - - - - ribonucleic acid export 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1029]
91. kif3a ENSDARG00000087538, ENSDARG00000109880, ENSDARG00000117005 1216 0.99 - 0.990 - - - - - - - kinesin family member 3A [Source:ZFIN;Acc:ZDB-GENE-050417-71]
92. CASK CASK 1750 0.99 - 0.990 - - - - - - -
93. MAP4K4 ENSDARG00000098670 4665 0.99 - 0.990 - - - - - - - mitogen-activated protein kinase kinase kinase kinase 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6722]
94. amot ENSDARG00000078335 1757 0.99 - 0.990 - - - - - - - angiomotin [Source:ZFIN;Acc:ZDB-GENE-030131-7487]
95. STARD7 ENSDARG00000074858 889 0.99 - 0.990 - - - - - - - StAR-related lipid transfer (START) domain containing 7 [Source:ZFIN;Acc:ZDB-GENE-030131-2310]
96. otub1a ENSDARG00000055536 2892 0.99 - 0.990 - - - - - - - OTU deubiquitinase, ubiquitin aldehyde binding 1a [Source:ZFIN;Acc:ZDB-GENE-040718-108]
97. pah ENSDARG00000020143 1551 0.99 - 0.990 - - - - - - - phenylalanine hydroxylase [Source:ZFIN;Acc:ZDB-GENE-031006-2]
98. eps15l1a ENSDARG00000042670 1565 0.99 - 0.990 - - - - - - - epidermal growth factor receptor pathway substrate 15-like 1a [Source:ZFIN;Acc:ZDB-GENE-060503-274]
99. GATAD2B ENSDARG00000005834 3855 0.989 - 0.989 - - - - - - - GATA zinc finger domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-060503-655]
100. ENSDARG00000096553 ENSDARG00000096553 388 0.989 - 0.989 - - - - - - -

There are 1189 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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