Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for fdx1

Gene Name Gene ID Reads Annotation
fdx1 ENSDARG00000056410, ENSDARG00000115831 3463 ferredoxin 1 [Source:ZFIN;Acc:ZDB-GENE-071015-2]










Genes with expression patterns similar to fdx1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. fdx1 ENSDARG00000056410, ENSDARG00000115831 3463 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ferredoxin 1 [Source:ZFIN;Acc:ZDB-GENE-071015-2]
2. slmo2 slmo2 5559 2.291 - 0.738 - - - 0.839 0.714 - -
3. shfm1 7620 2.193 - 0.751 - - - 0.727 - 0.715 - split hand/foot malformation (ectrodactyly) type 1
4. psmc3 ENSDARG00000007141 5592 2.181 - 0.725 - - - 0.709 0.747 - - proteasome 26S subunit, ATPase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-666]
5. rab5c ENSDARG00000026712 4733 1.822 - - - - - - - 0.827 0.995 RAB5C, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-031118-30]
6. aqp1a.1 ENSDARG00000023713 3237 1.822 - - - - - - - 0.826 0.996 aquaporin 1a (Colton blood group), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7764]
7. atp13a atp13a 2867 1.77 - 0.771 - - - - - - 0.999
8. fzd7a ENSDARG00000060004, ENSDARG00000115544 4171 1.755 - 0.834 - - - - - 0.921 - frizzled class receptor 7a [Source:ZFIN;Acc:ZDB-GENE-990415-223]
9. nnt ENSDARG00000023536 7357 1.734 - - - - - 0.737 - - 0.997 nicotinamide nucleotide transhydrogenase [Source:ZFIN;Acc:ZDB-GENE-040426-2592]
10. stx2b ENSDARG00000068217 2567 1.714 - - - - - - 0.715 - 0.999 syntaxin 2b [Source:ZFIN;Acc:ZDB-GENE-091204-424]
11. thy1 ENSDARG00000035018, ENSDARG00000112392, ENSDARG00000112677 9697 1.692 - - - - - - 0.717 - 0.975 Thy-1 cell surface antigen [Source:ZFIN;Acc:ZDB-GENE-030131-8561]
12. pdlim4 ENSDARG00000068973 2567 1.678 - - - - - 0.767 - 0.911 - PDZ and LIM domain 4 [Source:ZFIN;Acc:ZDB-GENE-070308-5]
13. ube2v2 ENSDARG00000028198 23341 1.672 - - - - - - 0.700 - 0.972 ubiquitin-conjugating enzyme E2 variant 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2919]
14. arpc2 ENSDARG00000075989 22423 1.663 - - - - - - 0.714 - 0.949 actin related protein 2/3 complex, subunit 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5276]
15. cnn2 ENSDARG00000035858 18201 1.662 - - - - - - 0.735 - 0.927 calponin 2 [Source:ZFIN;Acc:ZDB-GENE-030131-542]
16. tefa ENSDARG00000039117, ENSDARG00000109532 3065 1.65 - 0.878 - - - - 0.772 - - thyrotrophic embryonic factor a [Source:ZFIN;Acc:ZDB-GENE-990415-264]
17. golga7 ENSDARG00000057676 4691 1.648 - - - - - - 0.844 0.804 - golgin A7 [Source:ZFIN;Acc:ZDB-GENE-040625-142]
18. hddc3 ENSDARG00000020473 2814 1.645 - 0.733 - - - - - 0.912 - HD domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-050417-377]
19. uchl5 ENSDARG00000103404, ENSDARG00000110434 4029 1.645 - - - - - - 0.702 0.943 - ubiquitin carboxyl-terminal hydrolase L5 [Source:ZFIN;Acc:ZDB-GENE-040426-2051]
20. ppp1cbl ENSDARG00000102012 2301 1.644 - 0.810 - - - - 0.834 - - protein phosphatase 1, catalytic subunit, beta isoform, like [Source:ZFIN;Acc:ZDB-GENE-030131-6529]
21. hmbsb ENSDARG00000055991 3037 1.63 - - - - - 0.729 - 0.901 - hydroxymethylbilane synthase, b [Source:ZFIN;Acc:ZDB-GENE-050522-491]
22. vgll4b ENSDARG00000103730 5266 1.629 - - - - - - 0.734 0.895 - vestigial-like family member 4b [Source:ZFIN;Acc:ZDB-GENE-040426-2445]
23. G3BP2 ENSDARG00000014790 9380 1.617 - 0.724 - - - - - - 0.893 GTPase activating protein (SH3 domain) binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070112-1972]
24. prpf4bb ENSDARG00000040310 2260 1.612 - - - - - 0.704 - 0.908 - pre-mRNA processing factor 4Bb [Source:ZFIN;Acc:ZDB-GENE-040426-2799]
25. srsf9 ENSDARG00000008097 2405 1.61 - - - - - - 0.719 0.891 - serine/arginine-rich splicing factor 9 [Source:ZFIN;Acc:ZDB-GENE-040426-2397]
26. huwe1 ENSDARG00000016782 6493 1.603 - - - - - - 0.718 0.885 - HECT, UBA and WWE domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-081104-387]
27. ubald1b ENSDARG00000020976 1162 1.599 - 0.810 - - - - 0.789 - - UBA-like domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-050522-446]
28. prelid1a ENSDARG00000098671 4745 1.595 - 0.807 - - - - 0.788 - - PRELI domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1341]
29. ppig ENSDARG00000044431 3427 1.594 - - - - - - 0.713 0.881 - peptidylprolyl isomerase G (cyclophilin G) [Source:ZFIN;Acc:ZDB-GENE-040426-2822]
30. shc1 ENSDARG00000075437 3278 1.571 - - - - - - 0.702 0.869 - SHC (Src homology 2 domain containing) transforming protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2538]
31. ap2b1 ENSDARG00000035152 2912 1.567 - - - - - - 0.812 0.755 - adaptor related protein complex 2 subunit beta 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6564]
32. chchd2 ENSDARG00000059304, ENSDARG00000112202 7438 1.561 - - - - - 0.729 - 0.832 - coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1737]
33. prkar1aa ENSDARG00000076128 6565 1.551 - 0.749 - - - - 0.802 - - protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) a [Source:ZFIN;Acc:ZDB-GENE-050116-2]
34. tpst1 ENSDARG00000073872 2490 1.549 - - - - - - 0.772 0.777 - tyrosylprotein sulfotransferase 1 [Source:ZFIN;Acc:ZDB-GENE-000210-10]
35. ptbp1a ENSDARG00000019362 6290 1.542 - 0.712 - - - - 0.830 - - polypyrimidine tract binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050522-492]
36. ndufa1 ENSDARG00000036329, ENSDARG00000111888 18361 1.542 - - - - - 0.718 0.824 - - NADH:ubiquinone oxidoreductase subunit A1 [Source:ZFIN;Acc:ZDB-GENE-040625-168]
37. vta1 ENSDARG00000013732 6072 1.536 - - - - - - 0.740 0.796 - vesicle (multivesicular body) trafficking 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2154]
38. CWC15 ENSDARG00000013382 8969 1.535 - 0.783 - - - 0.752 - - - CWC15 spliceosome-associated protein homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040625-10]
39. osbpl9 ENSDARG00000069298 2730 1.522 - - - - - 0.712 0.810 - - oxysterol binding protein-like 9 [Source:ZFIN;Acc:ZDB-GENE-061110-103]
40. arpp19b ENSDARG00000039880 4823 1.518 - - - - - - 0.710 0.808 - cAMP-regulated phosphoprotein 19b [Source:ZFIN;Acc:ZDB-GENE-040426-930]
41. gps1 ENSDARG00000040650 3893 1.517 - 0.796 - - - 0.721 - - - G protein pathway suppressor 1 [Source:ZFIN;Acc:ZDB-GENE-041111-240]
42. psmc2 ENSDARG00000020101 8095 1.51 - - - - - - 0.780 0.730 - proteasome 26S subunit, ATPase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1327]
43. lima1 lima1 4760 1.506 - - - - - - 0.736 0.770 -
44. h3f3b.1_1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 26947 1.506 - - - - - - 0.795 0.711 - H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
45. ccdc47 ENSDARG00000054362 5970 1.505 - - - - - 0.727 0.778 - - coiled-coil domain containing 47 [Source:ZFIN;Acc:ZDB-GENE-040912-15]
46. txlna ENSDARG00000077037 2614 1.503 - - - - - 0.754 0.749 - - taxilin alpha [Source:ZFIN;Acc:ZDB-GENE-030131-2900]
47. ide ENSDARG00000075570 4331 1.502 - 0.765 - - - - 0.737 - - insulin-degrading enzyme [Source:ZFIN;Acc:ZDB-GENE-070410-85]
48. adh5 ENSDARG00000080010, ENSDARG00000111574 4980 1.502 - - - - - 0.705 0.797 - - alcohol dehydrogenase 5 [Source:ZFIN;Acc:ZDB-GENE-011003-1]
49. itgb1b.1 ENSDARG00000053232 4721 1.486 - 0.778 - - - 0.708 - - - integrin, beta 1b.1 [Source:ZFIN;Acc:ZDB-GENE-060803-3]
50. naprt1 naprt1 2610 1.485 - 0.751 - - - - 0.734 - -
51. arpc1a ENSDARG00000008383 7353 1.468 - 0.710 - - - - 0.758 - - actin related protein 2/3 complex, subunit 1A [Source:ZFIN;Acc:ZDB-GENE-040116-1]
52. MATR3 MATR3 3962 1.455 - 0.741 - - - - 0.714 - -
53. si:ch1073-325m22.2 ENSDARG00000095921 8534 1.449 - 0.723 - - - 0.726 - - - si:ch1073-325m22.2 [Source:NCBI gene;Acc:100333135]
54. exosc1 ENSDARG00000059841 6895 1.446 - 0.723 - - - - 0.723 - - exosome component 1 [Source:ZFIN;Acc:ZDB-GENE-080926-3]
55. palm1b ENSDARG00000007818 2128 1.434 - - - - - - 0.700 0.734 - paralemmin 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1147]
56. yipf4 ENSDARG00000030957, ENSDARG00000109994 4665 1.407 - 0.703 - - - - 0.704 - - Yip1 domain family, member 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2253]
57. zc3h15 ENSDARG00000015889 3861 0.999 - - - - - - - - 0.999 zinc finger CCCH-type containing 15 [Source:ZFIN;Acc:ZDB-GENE-030131-6239]
58. C13H9orf72 C13H9orf72 2310 0.999 - - - - - - - - 0.999
59. tfam ENSDARG00000063145 4524 0.999 - - - - - - - - 0.999 transcription factor A, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-061013-552]
60. tpd52l2a ENSDARG00000027154 4359 0.999 - - - - - - - - 0.999 tumor protein D52-like 2a [Source:ZFIN;Acc:ZDB-GENE-030131-7047]
61. sema3ga ENSDARG00000042545 1603 0.999 - - - - - - - - 0.999 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ga [Source:ZFIN;Acc:ZDB-GENE-050513-3]
62. dcaf15 ENSDARG00000077790 1039 0.999 - - - - - - - - 0.999 DDB1 and CUL4 associated factor 15 [Source:ZFIN;Acc:ZDB-GENE-030131-2374]
63. foxa2 ENSDARG00000003411 2309 0.999 - - - - - - - - 0.999 forkhead box A2 [Source:ZFIN;Acc:ZDB-GENE-980526-404]
64. psme4b ENSDARG00000018742, ENSDARG00000112854, ENSDARG00000114902 2916 0.999 - - - - - - - - 0.999 proteasome activator subunit 4b [Source:ZFIN;Acc:ZDB-GENE-100316-4]
65. mrps33 ENSDARG00000020015 3551 0.999 - - - - - - - - 0.999 mitochondrial ribosomal protein S33 [Source:ZFIN;Acc:ZDB-GENE-040715-6]
66. pknox1.2 ENSDARG00000036542 1503 0.999 - - - - - - - - 0.999 pbx/knotted 1 homeobox 1.2 [Source:ZFIN;Acc:ZDB-GENE-020123-1]
67. BAD BAD 1322 0.999 - - - - - - - - 0.999
68. flot2b ENSDARG00000069774 2831 0.999 - - - - - - - - 0.999 flotillin 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1368]
69. inpp5f ENSDARG00000061437 1228 0.999 - - - - - - - - 0.999 inositol polyphosphate-5-phosphatase F [Source:ZFIN;Acc:ZDB-GENE-041111-194]
70. zbtb5 1484 0.999 - - - - - - - - 0.999 zinc finger and BTB domain containing 5
71. sorbs1 ENSDARG00000103435 2297 0.999 - - - - - - - - 0.999 sorbin and SH3 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-090313-168]
72. sec63 ENSDARG00000017740 3789 0.999 - - - - - - - - 0.999 SEC63 homolog, protein translocation regulator [Source:ZFIN;Acc:ZDB-GENE-040718-328]
73. fopnl ENSDARG00000071198 1002 0.999 - - - - - - - - 0.999 fgfr1op N-terminal like [Source:ZFIN;Acc:ZDB-GENE-101124-1]
74. tfec ENSDARG00000098745 1399 0.999 - - - - - - - - 0.999 transcription factor EC [Source:ZFIN;Acc:ZDB-GENE-041210-21]
75. fam135a ENSDARG00000059843 2352 0.999 - - - - - - - - 0.999 family with sequence similarity 135, member A [Source:ZFIN;Acc:ZDB-GENE-080130-1]
76. dhx8 ENSDARG00000054707 2088 0.999 - - - - - - - - 0.999 DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Source:ZFIN;Acc:ZDB-GENE-050809-39]
77. opa1_1 ENSDARG00000070801 1424 0.999 - - - - - - - - 0.999 optic atrophy 1 (autosomal dominant) [Source:ZFIN;Acc:ZDB-GENE-041114-7]
78. galnt13 ENSDARG00000099227 1059 0.999 - - - - - - - - 0.999 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 [Source:ZFIN;Acc:ZDB-GENE-091204-444]
79. hnrnpua ENSDARG00000015206 4012 0.998 - - - - - - - - 0.998 heterogeneous nuclear ribonucleoprotein Ua [Source:ZFIN;Acc:ZDB-GENE-030131-3731]
80. acin1b ENSDARG00000026842 3806 0.998 - - - - - - - - 0.998 apoptotic chromatin condensation inducer 1b [Source:ZFIN;Acc:ZDB-GENE-030826-12]
81. pck2 ENSDARG00000020956, ENSDARG00000110463 4713 0.998 - - - - - - - - 0.998 phosphoenolpyruvate carboxykinase 2 (mitochondrial) [Source:ZFIN;Acc:ZDB-GENE-040426-2266]
82. AGAP1 ENSDARG00000062123, ENSDARG00000113863 2842 0.998 - - - - - - - - 0.998 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 [Source:ZFIN;Acc:ZDB-GENE-130405-1]
83. pura pura 1854 0.997 - - - - - - - - 0.997
84. rbmx2 ENSDARG00000044380, ENSDARG00000115698 2528 0.997 - - - - - - - - 0.997 RNA binding motif protein X-linked 2 [Source:ZFIN;Acc:ZDB-GENE-050626-88]
85. amotl2a ENSDARG00000061923 4713 0.997 - - - - - - - - 0.997 angiomotin like 2a [Source:ZFIN;Acc:ZDB-GENE-030131-9770]
86. cxcr7b cxcr7b 2482 0.997 - - - - - - - - 0.997
87. gng3 ENSDARG00000009553 2530 0.997 - - - - - - - - 0.997 guanine nucleotide binding protein (G protein), gamma 3 [Source:ZFIN;Acc:ZDB-GENE-010705-1]
88. pou2f2a ENSDARG00000019658, ENSDARG00000036816 2027 0.996 - - - - - - - - 0.996 POU class 2 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-060310-2]
89. pds5a ENSDARG00000055022, ENSDARG00000115793 3842 0.995 - - - - - - - - 0.995 PDS5 cohesin associated factor A [Source:ZFIN;Acc:ZDB-GENE-040426-1612]
90. sltm ENSDARG00000052728 6234 0.995 - - - - - - - - 0.995 SAFB-like, transcription modulator [Source:ZFIN;Acc:ZDB-GENE-040426-2647]
91. odc1 ENSDARG00000007377 8957 0.995 - - - - - - - - 0.995 ornithine decarboxylase 1 [Source:ZFIN;Acc:ZDB-GENE-010816-1]
92. ilk ENSDARG00000056964 6686 0.995 - - - - - - - - 0.995 integrin-linked kinase [Source:ZFIN;Acc:ZDB-GENE-040426-1435]
93. glceb ENSDARG00000068981 2100 0.994 - - - - - - - - 0.994 glucuronic acid epimerase b [Source:ZFIN;Acc:ZDB-GENE-040630-8]
94. pax6a ENSDARG00000103379 3061 0.994 - - - - - - - - 0.994 paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
95. cst3 ENSDARG00000007795 13753 0.991 - - - - - - - - 0.991 cystatin C (amyloid angiopathy and cerebral hemorrhage) [Source:ZFIN;Acc:ZDB-GENE-030131-373]
96. strn3 ENSDARG00000001729 4608 0.985 - - - - - - - - 0.985 striatin, calmodulin binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-030616-405]
97. nmrk2 ENSDARG00000067848 10293 0.983 - - - - - - - - 0.983 nicotinamide riboside kinase 2 [Source:ZFIN;Acc:ZDB-GENE-040912-44]
98. col12a1b ENSDARG00000019601 9985 0.982 - - - - - - - - 0.982 collagen, type XII, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-120215-116]
99. ndrg2 ENSDARG00000011170 11442 0.981 - - - - - - - - 0.981 NDRG family member 2 [Source:ZFIN;Acc:ZDB-GENE-041212-15]
100. khdrbs1b ENSDARG00000070475 18157 0.977 - - - - - - - - 0.977 KH domain containing, RNA binding, signal transduction associated 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2344]

There are 923 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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