Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for emx2

Gene Name Gene ID Reads Annotation
emx2 ENSDARG00000039701 827 empty spiracles homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-990415-54]










Genes with expression patterns similar to emx2

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. emx2 ENSDARG00000039701 827 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 empty spiracles homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-990415-54]
2. scrt1b ENSDARG00000040214, ENSDARG00000110984 533 1.592 - - - - - - - 0.796 0.796 scratch family zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-050327-72]
3. cdc45 ENSDARG00000043720 353 1.589 - - - - - 0.847 - 0.742 - CDC45 cell division cycle 45 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040426-2710]
4. shox ENSDARG00000025891 338 1.587 - - - - - - - 0.797 0.790 short stature homeobox [Source:ZFIN;Acc:ZDB-GENE-051030-21]
5. hoxc12a ENSDARG00000070352 7409 1.579 0.780 - - - - - 0.799 - - homeobox C12a [Source:ZFIN;Acc:ZDB-GENE-000822-6]
6. soat2 ENSDARG00000059824 62 1.543 0.749 - - - - 0.794 - - - sterol O-acyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-061013-742]
7. hmgb1a ENSDARG00000099175, ENSDARG00000114353 17231 1.542 - - - - - - - 0.715 0.827 high mobility group box 1a [Source:ZFIN;Acc:ZDB-GENE-030131-341]
8. chtopb ENSDARG00000070430 29 1.531 0.749 - - - - 0.782 - - - chromatin target of PRMT1b [Source:ZFIN;Acc:ZDB-GENE-061013-712]
9. crb2b ENSDARG00000060081 144 1.529 0.716 - - - - 0.813 - - - crumbs family member 2b [Source:ZFIN;Acc:ZDB-GENE-060610-1]
10. cntnap2b ENSDARG00000074558, ENSDARG00000109616, ENSDARG00000116850 559 1.524 - - - - - - - 0.790 0.734 contactin associated protein like 2b [Source:NCBI gene;Acc:563345]
11. si:ch211-158d24.4 ENSDARG00000093048 281 1.51 - 0.732 - - - - 0.778 - - si:ch211-158d24.4 [Source:ZFIN;Acc:ZDB-GENE-081104-141]
12. lrrc34 ENSDARG00000062235 23 1.491 0.738 - - - - 0.753 - - - leucine rich repeat containing 34 [Source:ZFIN;Acc:ZDB-GENE-091118-73]
13. tia1 ENSDARG00000052536, ENSDARG00000114478 4392 1.489 - - - - - - - 0.739 0.750 TIA1 cytotoxic granule-associated RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-1506]
14. lin37 ENSDARG00000053950 1003 1.487 - 0.730 - - - 0.757 - - - lin-37 DREAM MuvB core complex component [Source:ZFIN;Acc:ZDB-GENE-050417-446]
15. CABZ01002626.1 CABZ01002626.1 29 1.484 0.749 - - - - 0.735 - - -
16. fam98b ENSDARG00000060068, ENSDARG00000113494 67 1.484 - - - - - - - 0.742 0.742 family with sequence similarity 98, member B [Source:ZFIN;Acc:ZDB-GENE-061201-63]
17. tcea1 ENSDARG00000003531 2912 1.478 - 0.734 - - - - - - 0.744 transcription elongation factor A (SII), 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8049]
18. irx7 ENSDARG00000002601 72 1.464 - - - - - - - 0.738 0.726 iroquois homeobox 7 [Source:ZFIN;Acc:ZDB-GENE-020103-1]
19. tcf7l2 ENSDARG00000004415, ENSDARG00000110486 1920 1.463 - - - - - - 0.740 - 0.723 transcription factor 7 like 2 [Source:ZFIN;Acc:ZDB-GENE-991110-8]
20. ELMO1 ENSDARG00000098753 114 1.462 0.749 - - - - - - 0.713 - engulfment and cell motility 1 (ced-12 homolog, C. elegans) [Source:ZFIN;Acc:ZDB-GENE-040426-2069]
21. barhl1b ENSDARG00000019013, ENSDARG00000113145 101 1.457 - - - - - - - 0.702 0.755 BarH-like homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-060118-2]
22. pou3f2a ENSDARG00000070220 817 1.457 - - - - - - - 0.738 0.719 POU class 3 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-139]
23. rbm41 ENSDARG00000054096 498 1.443 - - - - - 0.733 0.710 - - RNA binding motif protein 41 [Source:ZFIN;Acc:ZDB-GENE-041114-107]
24. EPS8L3 EPS8L3 111 1.438 - - - - - 0.734 0.704 - -
25. golga3 ENSDARG00000062511 588 1.429 - 0.701 - - - 0.728 - - - golgin A3 [Source:ZFIN;Acc:ZDB-GENE-060526-252]
26. BX324132.5 BX324132.5 115 1.418 - - - - - - - 0.714 0.704
27. fam213b ENSDARG00000029795 387 0.918 - - - - - 0.918 - - - family with sequence similarity 213, member B [Source:ZFIN;Acc:ZDB-GENE-040426-2556]
28. prkag1 ENSDARG00000003818 2800 0.886 - 0.886 - - - - - - - protein kinase, AMP-activated, gamma 1 non-catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-040426-2188]
29. si:ch211-127i16.2 ENSDARG00000092976, ENSDARG00000116049 152 0.879 - - - - - 0.879 - - - si:ch211-127i16.2 [Source:ZFIN;Acc:ZDB-GENE-091204-54]
30. haao ENSDARG00000076487 143 0.876 - - - - - 0.876 - - - 3-hydroxyanthranilate 3,4-dioxygenase [Source:ZFIN;Acc:ZDB-GENE-041114-89]
31. adrb2a ENSDARG00000088124 324 0.875 - - - - - 0.875 - - - adrenoceptor beta 2, surface a [Source:ZFIN;Acc:ZDB-GENE-100414-3]
32. smg5 ENSDARG00000041481 1286 0.874 - 0.874 - - - - - - - SMG5 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-050913-144]
33. kmt2cb ENSDARG00000075560 4816 0.869 - 0.869 - - - - - - - lysine (K)-specific methyltransferase 2Cb [Source:ZFIN;Acc:ZDB-GENE-070705-340]
34. camlg ENSDARG00000100409 2157 0.867 - 0.867 - - - - - - - calcium modulating ligand [Source:ZFIN;Acc:ZDB-GENE-040426-2407]
35. OPLAH ENSDARG00000045123 707 0.866 - - - - - 0.866 - - - 5-oxoprolinase, ATP-hydrolysing [Source:ZFIN;Acc:ZDB-GENE-121214-293]
36. ap1s1 ENSDARG00000056803 3854 0.861 - 0.861 - - - - - - - adaptor related protein complex 1 subunit sigma 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1119]
37. DDX47_1 DDX47_1 453 0.858 - - - - - 0.858 - - -
38. mrps34 ENSDARG00000057910 2007 0.855 - 0.855 - - - - - - - mitochondrial ribosomal protein S34 [Source:ZFIN;Acc:ZDB-GENE-041114-71]
39. tmem205 ENSDARG00000100677 101 0.852 - - - - - 0.852 - - - transmembrane protein 205 [Source:ZFIN;Acc:ZDB-GENE-070112-1692]
40. BX649498.2 BX649498.2 40 0.85 - - - - - 0.850 - - -
41. hes2.1 ENSDARG00000074897 10 0.849 - - - - - - - 0.849 - hes family bHLH transcription factor 2, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-081104-104]
42. pum2 ENSDARG00000061040 207 0.847 - - - - - 0.847 - - - pumilio RNA-binding family member 2 [Source:ZFIN;Acc:ZDB-GENE-081031-76]
43. nol6 ENSDARG00000059711, ENSDARG00000115621 853 0.846 - - - - - 0.846 - - - nucleolar protein 6 (RNA-associated) [Source:ZFIN;Acc:ZDB-GENE-030131-6294]
44. cd248a ENSDARG00000103713, ENSDARG00000109369 1415 0.846 - 0.846 - - - - - - - CD248 molecule, endosialin a [Source:ZFIN;Acc:ZDB-GENE-030131-2084]
45. limk1b ENSDARG00000003022 172 0.842 - - - - - 0.842 - - - LIM domain kinase 1b [Source:ZFIN;Acc:ZDB-GENE-110411-106]
46. TRIM14_2 TRIM14_2 15 0.841 - - - - - 0.841 - - -
47. pemt ENSDARG00000103614 474 0.84 - - - - - 0.840 - - - phosphatidylethanolamine N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-040426-719]
48. CLDN23_1 CLDN23_1 198 0.839 - - - - - - 0.839 - -
49. gorab ENSDARG00000042031 483 0.837 - - - - - 0.837 - - - golgin, rab6-interacting [Source:ZFIN;Acc:ZDB-GENE-040426-1384]
50. mmp14b ENSDARG00000008388, ENSDARG00000111313 2125 0.835 - 0.835 - - - - - - - matrix metallopeptidase 14b (membrane-inserted) [Source:ZFIN;Acc:ZDB-GENE-030901-2]
51. rp1 ENSDARG00000077687 18 0.835 - - - - - 0.835 - - - retinitis pigmentosa 1 (autosomal dominant) [Source:ZFIN;Acc:ZDB-GENE-070912-612]
52. BX005423.3 BX005423.3 33 0.835 - - - - - 0.835 - - -
53. card9 ENSDARG00000067672 33 0.834 - - - - - 0.834 - - - caspase recruitment domain family, member 9 [Source:ZFIN;Acc:ZDB-GENE-060531-94]
54. ampd3b ENSDARG00000032469, ENSDARG00000117191 350 0.832 - - - - - 0.832 - - - adenosine monophosphate deaminase 3b [Source:ZFIN;Acc:ZDB-GENE-030131-5929]
55. ptger1b ENSDARG00000104847 91 0.832 - - - - - 0.832 - - - prostaglandin E receptor 1b (subtype EP1) [Source:ZFIN;Acc:ZDB-GENE-100922-278]
56. actr2b ENSDARG00000070076 49 0.832 - - - - - 0.832 - - - ARP2 actin related protein 2b homolog [Source:ZFIN;Acc:ZDB-GENE-050410-4]
57. si:ch73-269m14.4 ENSDARG00000086612 20 0.832 - - - - - 0.832 - - - si:ch73-269m14.4 [Source:ZFIN;Acc:ZDB-GENE-120215-94]
58. ZBTB41 ENSDARG00000054984 464 0.831 - - - - - 0.831 - - - zinc finger and BTB domain containing 41 [Source:ZFIN;Acc:ZDB-GENE-130530-649]
59. baiap2l1b ENSDARG00000031119 71 0.829 - - - - - 0.829 - - - BAI1-associated protein 2-like 1b [Source:ZFIN;Acc:ZDB-GENE-050417-371]
60. CR388047.3 ENSDARG00000117023 89 0.827 - - - - - 0.827 - - -
61. si:ch211-225b11.1 ENSDARG00000002405 172 0.826 - - - - - 0.826 - - - si:ch211-225b11.1 [Source:ZFIN;Acc:ZDB-GENE-060531-39]
62. rpp40 ENSDARG00000017605 63 0.826 - - - - - 0.826 - - - ribonuclease P/MRP 40 subunit [Source:ZFIN;Acc:ZDB-GENE-040625-161]
63. hsd17b3 ENSDARG00000023287, ENSDARG00000115935, ENSDARG00000116671 134 0.825 0.825 - - - - - - - - hydroxysteroid (17-beta) dehydrogenase 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1339]
64. CTIF ENSDARG00000090617 270 0.825 - - - - - 0.825 - - - CBP80/20-dependent translation initiation factor [Source:ZFIN;Acc:ZDB-GENE-130530-1003]
65. zgc:174651 zgc:174651 90 0.824 - - - - - 0.824 - - -
66. mtfr2 ENSDARG00000060394 482 0.823 - - - - - 0.823 - - - mitochondrial fission regulator 2 [Source:ZFIN;Acc:ZDB-GENE-061013-398]
67. cramp1l cramp1l 700 0.822 - - - - - 0.822 - - -
68. CABP7 CABP7 131 0.821 - - - - - 0.821 - - -
69. dachc ENSDARG00000003142, ENSDARG00000109556 513 0.821 - - - - - - 0.821 - - dachshund c [Source:ZFIN;Acc:ZDB-GENE-020402-5]
70. si:ch211-120j21.1 si:ch211-120j21.1 638 0.82 - 0.820 - - - - - - -
71. olfml3b ENSDARG00000062171 264 0.82 - - - - - 0.820 - - - olfactomedin-like 3b [Source:ZFIN;Acc:ZDB-GENE-050302-161]
72. HYAL1 ENSDARG00000059916 134 0.82 - - - - - - 0.820 - - hyaluronoglucosaminidase 1 [Source:ZFIN;Acc:ZDB-GENE-060312-42]
73. zgc:66350 zgc:66350 122 0.82 - - - - - 0.820 - - -
74. si:ch1073-441p17.1 ENSDARG00000095861 1212 0.819 0.819 - - - - - - - - si:ch1073-441p17.1 [Source:ZFIN;Acc:ZDB-GENE-110411-140]
75. zgc:162576 zgc:162576 56 0.816 - - - - - 0.816 - - -
76. dhcr24 ENSDARG00000013236 61 0.816 - - - - - 0.816 - - - 24-dehydrocholesterol reductase [Source:ZFIN;Acc:ZDB-GENE-041212-73]
77. pcdh1b ENSDARG00000036175 101 0.815 - - - - - 0.815 - - - protocadherin 1b [Source:ZFIN;Acc:ZDB-GENE-091015-2]
78. si:ch211-113a14.12 ENSDARG00000077456 1004 0.814 - - - - - - - - 0.814 si:ch211-113a14.12 [Source:ZFIN;Acc:ZDB-GENE-121214-99]
79. lhx9 ENSDARG00000056979 249 0.814 - - - - - - - - 0.814 LIM homeobox 9 [Source:ZFIN;Acc:ZDB-GENE-050417-210]
80. mrps22_1 ENSDARG00000018073, ENSDARG00000115927 104 0.813 - - - - - 0.813 - - - mitochondrial ribosomal protein S22 [Source:ZFIN;Acc:ZDB-GENE-070615-31]
81. tnfrsf9a ENSDARG00000060498, ENSDARG00000116466 679 0.813 - - - - - 0.813 - - - tumor necrosis factor receptor superfamily, member 9a [Source:ZFIN;Acc:ZDB-GENE-060421-8213]
82. atp1a1a.3 ENSDARG00000039131 3267 0.812 - - - - - - 0.812 - - ATPase Na+/K+ transporting subunit alpha 1a, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-001212-3]
83. zgc:92326 zgc:92326 94 0.812 - - - - - 0.812 - - -
84. hsd17b12b ENSDARG00000035872 631 0.812 - 0.812 - - - - - - - hydroxysteroid (17-beta) dehydrogenase 12b [Source:ZFIN;Acc:ZDB-GENE-030131-1346]
85. vav3a ENSDARG00000086623 498 0.812 - - - - - 0.812 - - - vav 3 guanine nucleotide exchange factor a [Source:ZFIN;Acc:ZDB-GENE-091204-266]
86. znf385b ENSDARG00000006065 817 0.811 - - - - - - 0.811 - - zinc finger protein 385B [Source:ZFIN;Acc:ZDB-GENE-030616-154]
87. CU019624.1 ENSDARG00000103960 273 0.811 - - - - - 0.811 - - -
88. drd4-rs ENSDARG00000001912 45 0.811 - - - - - 0.811 - - - dopamine receptor D4 related sequence [Source:ZFIN;Acc:ZDB-GENE-051113-172]
89. kcnk5a ENSDARG00000023587, ENSDARG00000111204 128 0.811 - - - - - 0.811 - - - potassium channel, subfamily K, member 5a [Source:ZFIN;Acc:ZDB-GENE-051113-112]
90. esrrgb ENSDARG00000011696 108 0.811 - - - - - 0.811 - - - estrogen-related receptor gamma b [Source:ZFIN;Acc:ZDB-GENE-040616-4]
91. hsdl1 ENSDARG00000041736 171 0.81 - - - - - 0.810 - - - hydroxysteroid dehydrogenase like 1 [Source:ZFIN;Acc:ZDB-GENE-041212-31]
92. si:dkeyp-109b10.3 si:dkeyp-109b10.3 299 0.809 - - - - - - 0.809 - -
93. rnmtl1b 116 0.809 - - - - - 0.809 - - - RNA methyltransferase like 1b
94. SBNO2 SBNO2 773 0.809 - 0.809 - - - - - - -
95. TTYH1 ENSDARG00000076804 399 0.808 - - - - - - - - 0.808 tweety family member 1 [Source:ZFIN;Acc:ZDB-GENE-100922-257]
96. lims1 ENSDARG00000026985 2072 0.808 - - - - - 0.808 - - - LIM and senescent cell antigen-like domains 1 [Source:ZFIN;Acc:ZDB-GENE-050522-236]
97. ANKRD11 ENSDARG00000051886 10024 0.808 - 0.808 - - - - - - - ankyrin repeat domain 11 [Source:ZFIN;Acc:ZDB-GENE-030131-3932]
98. bcr ENSDARG00000079286 578 0.808 - - - 0.808 - - - - - breakpoint cluster region [Source:ZFIN;Acc:ZDB-GENE-040724-43]
99. zgc:165423 ENSDARG00000052905 1 0.808 - - - - - - - 0.808 - zgc:165423 [Source:ZFIN;Acc:ZDB-GENE-070720-11]
100. FCHSD2_1 FCHSD2_1 14 0.808 - - - - - - - 0.808 -

There are 801 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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