Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for dpf3

Gene Name Gene ID Reads Annotation
dpf3 ENSDARG00000025309 1376 D4, zinc and double PHD fingers, family 3 [Source:ZFIN;Acc:ZDB-GENE-041014-190]










Genes with expression patterns similar to dpf3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. dpf3 ENSDARG00000025309 1376 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 D4, zinc and double PHD fingers, family 3 [Source:ZFIN;Acc:ZDB-GENE-041014-190]
2. ephb3a ENSDARG00000031548 1872 2.292 - 0.716 - - - - - 0.714 0.862 eph receptor B3a [Source:ZFIN;Acc:ZDB-GENE-990415-60]
3. papss1 ENSDARG00000057099 809 1.711 - - - - - - - 0.858 0.853 3'-phosphoadenosine 5'-phosphosulfate synthase 1 [Source:ZFIN;Acc:ZDB-GENE-080721-5]
4. phc2b_1 ENSDARG00000013224 1316 1.701 - 0.829 - - - - - - 0.872 polyhomeotic homolog 2b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-1113]
5. tfap2b ENSDARG00000012667 746 1.681 - - - - - - - 0.820 0.861 transcription factor AP-2 beta [Source:ZFIN;Acc:ZDB-GENE-050417-394]
6. her4.1 ENSDARG00000056732 1264 1.669 - - - - - - - 0.808 0.861 hairy-related 4, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-980526-521]
7. ADAM22 ENSDARG00000060532 2259 1.669 - - - - - - - 0.842 0.827 ADAM metallopeptidase domain 22 [Source:ZFIN;Acc:ZDB-GENE-070810-1]
8. mta2 ENSDARG00000013031 2932 1.654 - - - - - - - 0.841 0.813 metastasis associated 1 family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4803]
9. CABZ01111990.1 CABZ01111990.1 4374 1.65 - - - - - - - 0.799 0.851
10. rab30 ENSDARG00000037884 1077 1.648 - 0.809 - - - - - 0.839 - RAB30, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-040718-250]
11. ehmt1b ENSDARG00000026634, ENSDARG00000116921 1261 1.64 - - - 0.757 - - - - 0.883 euchromatic histone-lysine N-methyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-080515-3]
12. lhx5 ENSDARG00000057936 785 1.631 - - - - - - - 0.816 0.815 LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]
13. mex3b ENSDARG00000058369 1867 1.629 - - - - - - - 0.713 0.916 mex-3 RNA binding family member B [Source:ZFIN;Acc:ZDB-GENE-030131-2628]
14. tox3 ENSDARG00000073957 3075 1.629 - - - - - - - 0.738 0.891 TOX high mobility group box family member 3 [Source:ZFIN;Acc:ZDB-GENE-090312-209]
15. cdc34b ENSDARG00000012627 3879 1.627 - - - - - - - 0.754 0.873 cell division cycle 34 homolog (S. cerevisiae) b [Source:ZFIN;Acc:ZDB-GENE-040718-439]
16. 5S_rRNA_21 5S_rRNA_21 1323 1.624 - - - - - - - 0.735 0.889
17. pou4f2 ENSDARG00000069737 451 1.618 - - - - - - - 0.728 0.890 POU class 4 homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-040401-1]
18. fscn1a ENSDARG00000059680 3999 1.609 - - - - - - - 0.775 0.834 fascin actin-bundling protein 1a [Source:ZFIN;Acc:ZDB-GENE-031009-1]
19. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 8110 1.597 - - - - - 0.711 - - 0.886 ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
20. hdac4 ENSDARG00000098349 1370 1.584 - - - - - - 0.788 - 0.796 histone deacetylase 4 [Source:ZFIN;Acc:ZDB-GENE-061013-95]
21. SPIN4_1 SPIN4_1 2562 1.579 - - - - - - - 0.704 0.875
22. zgc:113348 ENSDARG00000103795 1351 1.579 - - - - - - - 0.766 0.813 zgc:113348 [Source:ZFIN;Acc:ZDB-GENE-050227-10]
23. gad2 ENSDARG00000015537 724 1.576 - - - - - - - 0.719 0.857 glutamate decarboxylase 2 [Source:ZFIN;Acc:ZDB-GENE-030909-9]
24. polr1d ENSDARG00000037570 860 1.575 - - - - - - - 0.786 0.789 RNA polymerase I and III subunit D [Source:ZFIN;Acc:ZDB-GENE-040930-4]
25. CHD1 ENSDARG00000103787 1645 1.571 - - - - - - - 0.702 0.869 chromodomain helicase DNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7120]
26. polr2c ENSDARG00000033596, ENSDARG00000111144, ENSDARG00000113715 1388 1.57 - 0.721 - - - - - - 0.849 polymerase (RNA) II (DNA directed) polypeptide C [Source:ZFIN;Acc:ZDB-GENE-030131-6609]
27. cd99l2 ENSDARG00000056722 5036 1.569 - 0.710 - - - - - - 0.859 CD99 molecule-like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1986]
28. pou3f2b ENSDARG00000076262, ENSDARG00000112713 2439 1.566 - - - - - - - 0.792 0.774 POU class 3 homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-980526-370]
29. slbp ENSDARG00000100558 3405 1.559 - - - - - - - 0.749 0.810 stem-loop binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-9686]
30. CNOT4 CNOT4 899 1.558 - 0.821 - - - 0.737 - - -
31. bmper ENSDARG00000101980 668 1.548 - - - - - - 0.753 - 0.795 BMP binding endothelial regulator [Source:ZFIN;Acc:ZDB-GENE-030219-146]
32. ssb ENSDARG00000029252 3394 1.548 - 0.721 - - - - - - 0.827 Sjogren syndrome antigen B (autoantigen La) [Source:ZFIN;Acc:ZDB-GENE-030131-223]
33. snrpd3 ENSDARG00000013800, ENSDARG00000112203 3334 1.548 - - - - - - - 0.713 0.835 small nuclear ribonucleoprotein D3 polypeptide [Source:ZFIN;Acc:ZDB-GENE-040625-55]
34. lsm1 ENSDARG00000043177 767 1.543 - - - - - 0.753 - - 0.790 LSM1, U6 small nuclear RNA associated [Source:ZFIN;Acc:ZDB-GENE-040801-68]
35. mars ENSDARG00000034396 3618 1.54 - 0.734 - - - - - - 0.806 methionyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030219-83]
36. fastkd2 ENSDARG00000074031 748 1.532 - 0.764 - - - - - - 0.768 FAST kinase domains 2 [Source:ZFIN;Acc:ZDB-GENE-090313-7]
37. pes ENSDARG00000018902 3286 1.519 - 0.713 - - - - - - 0.806 pescadillo [Source:ZFIN;Acc:ZDB-GENE-990415-206]
38. rrp36 ENSDARG00000032516, ENSDARG00000109916 916 1.509 - 0.790 - - - 0.719 - - - ribosomal RNA processing 36 [Source:ZFIN;Acc:ZDB-GENE-030131-9751]
39. tom1l2 ENSDARG00000009217, ENSDARG00000111492 1639 1.501 - - - - - 0.713 - - 0.788 target of myb1 like 2 membrane trafficking protein [Source:ZFIN;Acc:ZDB-GENE-061013-3]
40. mrps2 ENSDARG00000103198 2410 1.497 - 0.739 - - - - - - 0.758 mitochondrial ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-070112-992]
41. RNF38 ENSDARG00000062055 3901 1.48 - - 0.703 - - - - 0.777 - ring finger protein 38 [Source:ZFIN;Acc:ZDB-GENE-030131-8693]
42. ccnk ENSDARG00000034146 1255 1.477 - 0.714 - - - - - 0.763 - cyclin K [Source:ZFIN;Acc:ZDB-GENE-030131-5126]
43. ap1g1 ENSDARG00000102394 818 1.462 0.751 - - - - - 0.711 - - adaptor related protein complex 1 subunit gamma 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3187]
44. brd2a ENSDARG00000022280 3481 1.455 - - - - - 0.723 - - 0.732 bromodomain containing 2a [Source:ZFIN;Acc:ZDB-GENE-990415-248]
45. ubr5 ENSDARG00000018192 9267 1.455 - 0.749 - - - - - 0.706 - ubiquitin protein ligase E3 component n-recognin 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6559]
46. FOXO4 ENSDARG00000055792 1457 1.454 - - - - - - - 0.711 0.743 forkhead box O4 [Source:ZFIN;Acc:ZDB-GENE-150311-1]
47. gpm6ab ENSDARG00000004621 5825 1.451 - - - - - - 0.744 0.707 - glycoprotein M6Ab [Source:ZFIN;Acc:ZDB-GENE-030710-8]
48. cars ENSDARG00000036164 2019 1.434 0.701 - - - - - - - 0.733 cysteinyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030328-29]
49. arnt2 ENSDARG00000103697 5731 1.427 - - - - - - - 0.726 0.701 aryl-hydrocarbon receptor nuclear translocator 2 [Source:ZFIN;Acc:ZDB-GENE-001207-3]
50. sptlc2b ENSDARG00000074287 1853 1.412 - - - - - - 0.706 - 0.706 serine palmitoyltransferase, long chain base subunit 2b [Source:ZFIN;Acc:ZDB-GENE-080305-8]
51. syncripl ENSDARG00000026723 3889 0.923 - - - - - - - - 0.923 synaptotagmin binding, cytoplasmic RNA interacting protein, like [Source:ZFIN;Acc:ZDB-GENE-030131-3104]
52. insm1a ENSDARG00000091756 1838 0.91 - - - - - - - - 0.910 insulinoma-associated 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1810]
53. AKT3 AKT3 1729 0.91 - - - - - - - - 0.910
54. TNPO2 ENSDARG00000042887 2290 0.903 - - - - - - - - 0.903 transportin 2 [Source:HGNC Symbol;Acc:HGNC:19998]
55. rimkla ENSDARG00000016830, ENSDARG00000112193 4111 0.902 - - - - - - - - 0.902 ribosomal modification protein rimK-like family member A [Source:ZFIN;Acc:ZDB-GENE-040912-20]
56. srsf6b ENSDARG00000016783 9926 0.901 - - - - - - - - 0.901 serine/arginine-rich splicing factor 6b [Source:ZFIN;Acc:ZDB-GENE-041219-1]
57. st8sia2 ENSDARG00000018788 2183 0.899 - - - - - - - - 0.899 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-020919-4]
58. cntnap2b ENSDARG00000074558, ENSDARG00000109616, ENSDARG00000116850 559 0.898 - - - - - - - 0.898 - contactin associated protein like 2b [Source:NCBI gene;Acc:563345]
59. bahcc1 bahcc1 1934 0.895 - - - - - - - - 0.895
60. ano9a ENSDARG00000076320, ENSDARG00000078941 865 0.894 - - - - - - - - 0.894 anoctamin 9a [Source:ZFIN;Acc:ZDB-GENE-071004-46]
61. pfkfb4l pfkfb4l 2539 0.893 - - - - - - - - 0.893
62. eps15l1a ENSDARG00000042670 1565 0.889 - - - - - - - - 0.889 epidermal growth factor receptor pathway substrate 15-like 1a [Source:ZFIN;Acc:ZDB-GENE-060503-274]
63. pcdh18a ENSDARG00000089805 1096 0.889 - - - - - - - - 0.889 protocadherin 18a [Source:ZFIN;Acc:ZDB-GENE-000607-1]
64. gpm6ba ENSDARG00000005739, ENSDARG00000110895 1177 0.886 - - - - - - - - 0.886 glycoprotein M6Ba [Source:ZFIN;Acc:ZDB-GENE-030710-9]
65. gpx7 ENSDARG00000091511 3045 0.884 - 0.884 - - - - - - - glutathione peroxidase 7 [Source:ZFIN;Acc:ZDB-GENE-050522-419]
66. PROSER1 ENSDARG00000086302 1935 0.883 - - - - - - - - 0.883 proline and serine rich 1 [Source:ZFIN;Acc:ZDB-GENE-111003-1]
67. nrn1a ENSDARG00000071860 1311 0.883 - - - - - - - - 0.883 neuritin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-212]
68. phf10 ENSDARG00000070084 1210 0.882 - - - - - - - - 0.882 PHD finger protein 10 [Source:ZFIN;Acc:ZDB-GENE-040426-1573]
69. stmn1b ENSDARG00000033655 9491 0.882 - - - - - - - - 0.882 stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
70. supt16h ENSDARG00000079949 4755 0.881 - - - - - - - - 0.881 SPT16 homolog, facilitates chromatin remodeling subunit [Source:ZFIN;Acc:ZDB-GENE-031118-96]
71. txnl4a ENSDARG00000036190 2048 0.881 - - - - - - - - 0.881 thioredoxin-like 4A [Source:ZFIN;Acc:ZDB-GENE-041010-25]
72. si:dkey-19e4.5 ENSDARG00000089886 2562 0.881 - - - - - - - - 0.881 si:dkey-19e4.5 [Source:ZFIN;Acc:ZDB-GENE-030131-1852]
73. mier1a ENSDARG00000041072 1690 0.881 - - - - - - - - 0.881 mesoderm induction early response 1a, transcriptional regulator [Source:ZFIN;Acc:ZDB-GENE-030131-409]
74. brox ENSDARG00000013659 1334 0.88 - - - - - - 0.880 - - BRO1 domain and CAAX motif containing [Source:ZFIN;Acc:ZDB-GENE-041114-137]
75. GADD45G_1 GADD45G_1 236 0.88 - - - - - - - 0.880 -
76. arid1b ENSDARG00000092503 1376 0.878 - - - - - - - - 0.878 AT rich interactive domain 1B (SWI1-like) [Source:ZFIN;Acc:ZDB-GENE-030131-4459]
77. clvs2 ENSDARG00000053122 1390 0.878 - - - - - - - 0.878 - clavesin 2 [Source:ZFIN;Acc:ZDB-GENE-041014-313]
78. msi1 ENSDARG00000010710 2634 0.878 - - - - - - - - 0.878 musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]
79. JHDM1D JHDM1D 2277 0.877 - - - - - - - - 0.877
80. dlc ENSDARG00000002336, ENSDARG00000116332 578 0.876 - - - - - - - - 0.876 deltaC [Source:ZFIN;Acc:ZDB-GENE-000125-4]
81. islr2 ENSDARG00000051875, ENSDARG00000109523 2288 0.876 - - - - - - - - 0.876 immunoglobulin superfamily containing leucine-rich repeat 2 [Source:ZFIN;Acc:ZDB-GENE-050320-95]
82. TSPAN4 TSPAN4 941 0.876 - 0.876 - - - - - - -
83. C1H4orf27 C1H4orf27 1961 0.875 - - - - - 0.875 - - -
84. EIF1B ENSDARG00000029445 5034 0.875 - - - - - - - - 0.875 eukaryotic translation initiation factor 1B [Source:HGNC Symbol;Acc:HGNC:30792]
85. sox12 ENSDARG00000025847 681 0.874 - - - - - - - - 0.874 SRY (sex determining region Y)-box 12 [Source:ZFIN;Acc:ZDB-GENE-040724-33]
86. prpf4bb ENSDARG00000040310 2260 0.874 - - - - - - - - 0.874 pre-mRNA processing factor 4Bb [Source:ZFIN;Acc:ZDB-GENE-040426-2799]
87. soga1 ENSDARG00000063075 1066 0.872 - - - - - - - - 0.872 suppressor of glucose, autophagy associated 1 [Source:ZFIN;Acc:ZDB-GENE-090313-188]
88. map1lc3a ENSDARG00000033609 939 0.871 - - - - - - 0.871 - - microtubule-associated protein 1 light chain 3 alpha [Source:ZFIN;Acc:ZDB-GENE-040426-2232]
89. kif15 ENSDARG00000012073 1936 0.871 - - - - - - - - 0.871 kinesin family member 15 [Source:ZFIN;Acc:ZDB-GENE-050622-16]
90. tra2a ENSDARG00000007863 4449 0.868 - - - - - - - - 0.868 transformer 2 alpha homolog [Source:ZFIN;Acc:ZDB-GENE-040426-1391]
91. cnot3a ENSDARG00000007135 3084 0.868 - - - - - - - - 0.868 CCR4-NOT transcription complex, subunit 3a [Source:ZFIN;Acc:ZDB-GENE-040927-6]
92. ptprsb 1085 0.868 - - - - - - - - 0.868 protein tyrosine phosphatase, receptor type, s, b
93. supt5h ENSDARG00000042724, ENSDARG00000111598 6419 0.868 - - - - - - - - 0.868 SPT5 homolog, DSIF elongation factor subunit [Source:ZFIN;Acc:ZDB-GENE-001207-1]
94. slc29a1a ENSDARG00000101289 2074 0.868 - - - - - - - - 0.868 solute carrier family 29 (equilibrative nucleoside transporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-050913-138]
95. dock7 ENSDARG00000078675 1995 0.867 - - - - - - - - 0.867 dedicator of cytokinesis 7 [Source:ZFIN;Acc:ZDB-GENE-050302-15]
96. LPL_1 LPL_1 1150 0.867 - - - - - - - - 0.867
97. NUMA1_2 NUMA1_2 2897 0.866 - - - - - - - - 0.866
98. fez1 ENSDARG00000023174 701 0.866 - - - - - - - 0.866 - fasciculation and elongation protein zeta 1 (zygin I) [Source:ZFIN;Acc:ZDB-GENE-040426-2723]
99. her4.3 ENSDARG00000070770 613 0.865 - - - - - - - 0.865 - hairy-related 4, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-081030-7]
100. pdlim5a ENSDARG00000101777 357 0.864 - - - - - - - - 0.864 PDZ and LIM domain 5a [Source:ZFIN;Acc:ZDB-GENE-040718-401]

There are 1173 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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