Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for dmrt3a

Gene Name Gene ID Reads Annotation
dmrt3a ENSDARG00000035290, ENSDARG00000114587 115 doublesex and mab-3 related transcription factor 3a [Source:ZFIN;Acc:ZDB-GENE-021220-3]










Genes with expression patterns similar to dmrt3a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. dmrt3a ENSDARG00000035290, ENSDARG00000114587 115 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 doublesex and mab-3 related transcription factor 3a [Source:ZFIN;Acc:ZDB-GENE-021220-3]
2. dbx1b ENSDARG00000001859, ENSDARG00000113468 810 3.379 0.927 0.766 - - - 0.713 0.973 - - developing brain homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-000128-11]
3. adam11 ENSDARG00000079204 298 3.328 0.865 0.854 - - - 0.770 0.839 - - ADAM metallopeptidase domain 11 [Source:ZFIN;Acc:ZDB-GENE-070808-3]
4. atp6ap1a ENSDARG00000041417 898 3.133 0.839 0.752 - - - 0.789 0.753 - - ATPase H+ transporting accessory protein 1a [Source:ZFIN;Acc:ZDB-GENE-090312-136]
5. scn8ab ENSDARG00000018032, ENSDARG00000112543 883 2.815 0.935 - - - - 0.912 0.968 - - sodium channel, voltage gated, type VIII, alpha subunit b [Source:ZFIN;Acc:ZDB-GENE-060906-2]
6. INA INA 950 2.802 - 0.932 - - - 0.896 0.974 - -
7. amph ENSDARG00000007663 599 2.775 0.870 - - - - 0.980 0.925 - - amphiphysin [Source:ZFIN;Acc:ZDB-GENE-040426-1711]
8. lrrc4.1 ENSDARG00000069402 323 2.766 0.938 - - - - 0.933 0.895 - - leucine rich repeat containing 4.1 [Source:ZFIN;Acc:ZDB-GENE-041210-129]
9. lhx1a ENSDARG00000014018 958 2.755 0.921 - - - - 0.877 0.957 - - LIM homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-347]
10. cacng8b ENSDARG00000070626 176 2.752 0.848 - - - - 0.938 0.966 - - calcium channel, voltage-dependent, gamma subunit 8b [Source:ZFIN;Acc:ZDB-GENE-100921-72]
11. snap25a ENSDARG00000020609 4537 2.694 0.847 - - - - 0.940 0.907 - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
12. slc32a1 ENSDARG00000059775 1092 2.687 0.854 - - - - 0.905 0.928 - - solute carrier family 32 (GABA vesicular transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-061201-1]
13. gabra5 ENSDARG00000070730 156 2.678 - 0.946 - - - 0.869 0.863 - - gamma-aminobutyric acid (GABA) A receptor, alpha 5 [Source:ZFIN;Acc:ZDB-GENE-081104-30]
14. her3 ENSDARG00000076857 131 2.671 0.907 - - - - 0.797 0.967 - - hairy-related 3 [Source:ZFIN;Acc:ZDB-GENE-980526-204]
15. scrt2 ENSDARG00000056175 4331 2.663 0.757 - - - - 0.966 0.940 - - scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
16. sez6l2 ENSDARG00000076052 360 2.66 0.852 - - - - 0.925 0.883 - - seizure related 6 homolog (mouse)-like 2 [Source:ZFIN;Acc:ZDB-GENE-091204-189]
17. TUSC5 TUSC5 1436 2.658 0.772 - - - - 0.933 0.953 - -
18. MAPK8IP1_1 MAPK8IP1_1 186 2.653 0.824 - - - - 0.886 0.943 - -
19. tuba1c ENSDARG00000055216 8384 2.648 0.844 - - - - 0.904 0.900 - - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
20. scrt1a ENSDARG00000100821 2687 2.645 0.846 0.897 - - - 0.902 - - - scratch family zinc finger 1a [Source:ZFIN;Acc:ZDB-GENE-080219-30]
21. mapk12b ENSDARG00000006409 2246 2.636 0.891 - - - - 0.892 0.853 - - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
22. STMN3 ENSDARG00000038465 1009 2.629 0.916 - - - - 0.799 0.914 - - stathmin-like 3 [Source:ZFIN;Acc:ZDB-GENE-081124-2]
23. si:ch211-278j3.3 ENSDARG00000020284 478 2.613 - 0.908 - - - 0.849 0.856 - - si:ch211-278j3.3 [Source:ZFIN;Acc:ZDB-GENE-041014-147]
24. lhx5 ENSDARG00000057936 785 2.608 0.765 - - - - 0.920 0.923 - - LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]
25. pnoca ENSDARG00000025024 467 2.608 0.831 - - - - 0.784 0.993 - - prepronociceptin a [Source:ZFIN;Acc:ZDB-GENE-101229-1]
26. SGIP1 SGIP1 236 2.601 0.880 - - - - 0.783 0.938 - -
27. gfap ENSDARG00000025301 5584 2.595 0.785 - - - - 0.913 0.897 - - glial fibrillary acidic protein [Source:ZFIN;Acc:ZDB-GENE-990914-3]
28. dtnbp1b ENSDARG00000055206 64 2.588 0.844 - - - - 0.745 0.999 - - dystrobrevin binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-060503-889]
29. dpysl3 ENSDARG00000002587 4381 2.587 0.878 - - - - 0.824 0.885 - - dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
30. nell2b ENSDARG00000062797 854 2.586 0.870 - - - - 0.801 0.915 - - neural EGFL like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-8026]
31. bsk146 ENSDARG00000099069 274 2.58 0.925 - - - - 0.772 0.883 - - brain specific kinase 146 [Source:ZFIN;Acc:ZDB-GENE-060313-3]
32. rbfox3 rbfox3 1443 2.578 0.853 - - - - 0.807 0.918 - -
33. rab3ab ENSDARG00000043835 1267 2.568 0.712 - - - - 0.951 0.905 - - RAB3A, member RAS oncogene family, b [Source:ZFIN;Acc:ZDB-GENE-041210-268]
34. atp6v1b2 ENSDARG00000043465, ENSDARG00000113422 682 2.561 0.747 - - - - 0.861 0.953 - - ATPase H+ transporting V1 subunit B2 [Source:ZFIN;Acc:ZDB-GENE-030711-4]
35. plp1a ENSDARG00000103732 3544 2.55 0.878 - - - - 0.881 0.791 - - proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
36. stmn2a ENSDARG00000033234 2272 2.549 0.730 - - - - 0.906 0.913 - - stathmin 2a [Source:ZFIN;Acc:ZDB-GENE-041010-85]
37. slc1a2b ENSDARG00000102453 3136 2.547 0.751 - - - - 0.900 0.896 - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
38. stmn1b ENSDARG00000033655 9491 2.536 0.798 - - - - 0.899 0.839 - - stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
39. st8sia5 ENSDARG00000036584 529 2.534 - 0.809 - - - 0.909 0.816 - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 [Source:ZFIN;Acc:ZDB-GENE-060322-8]
40. gap43 ENSDARG00000099744 4114 2.524 0.818 - - - - 0.878 0.828 - - growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
41. spock3 ENSDARG00000070266, ENSDARG00000110158 934 2.522 0.786 - - - - 0.904 0.832 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 [Source:ZFIN;Acc:ZDB-GENE-090311-24]
42. clstn3 ENSDARG00000073883 590 2.517 0.736 - - - - 0.831 0.950 - - calsyntenin 3 [Source:ZFIN;Acc:ZDB-GENE-100921-73]
43. cdk5r1b ENSDARG00000045087 2075 2.514 - 0.707 - - - 0.837 0.970 - - cyclin-dependent kinase 5, regulatory subunit 1b (p35) [Source:ZFIN;Acc:ZDB-GENE-040718-220]
44. prdm12b ENSDARG00000007430 914 2.51 0.720 - - - - 0.829 0.961 - - PR domain containing 12b [Source:ZFIN;Acc:ZDB-GENE-041114-172]
45. nbeaa ENSDARG00000070080 862 2.506 0.735 0.880 - - - - 0.891 - - neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
46. TPPP2 ENSDARG00000035338, ENSDARG00000113727 298 2.498 0.700 - - - - 0.845 0.953 - - tubulin polymerization-promoting protein family member 2 [Source:ZFIN;Acc:ZDB-GENE-140106-24]
47. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 2.494 0.757 - - - - 0.835 0.902 - - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
48. fgf13b ENSDARG00000056633 455 2.494 - 0.798 - - - 0.830 0.866 - - fibroblast growth factor 13b [Source:ZFIN;Acc:ZDB-GENE-040426-1793]
49. chrna3 ENSDARG00000100991, ENSDARG00000116434 63 2.492 0.843 - - - - 0.760 0.889 - - cholinergic receptor, nicotinic, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-070822-1]
50. EPB41L1 EPB41L1 1896 2.489 0.758 - - - - 0.773 0.958 - -
51. necap1 ENSDARG00000020798 612 2.488 0.737 - - - - 0.915 0.836 - - NECAP endocytosis associated 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1682]
52. dpysl5a ENSDARG00000011141 1827 2.479 0.715 - - - - 0.845 0.919 - - dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
53. rab6bb ENSDARG00000031343 1381 2.464 - 0.826 - - - 0.774 0.864 - - RAB6B, member RAS oncogene family b [Source:ZFIN;Acc:ZDB-GENE-050320-28]
54. hmp19 2554 2.462 0.870 - - - - 0.825 0.767 - - HMP19 protein
55. clvs2 ENSDARG00000053122 1390 2.461 0.757 0.908 - - - - 0.796 - - clavesin 2 [Source:ZFIN;Acc:ZDB-GENE-041014-313]
56. hpca ENSDARG00000018397, ENSDARG00000110115 3866 2.451 0.756 - - - - 0.891 0.804 - - hippocalcin [Source:ZFIN;Acc:ZDB-GENE-040426-1683]
57. tox ENSDARG00000032317 9126 2.444 0.811 - - - - 0.801 0.832 - - thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]
58. nova2 ENSDARG00000017673 7685 2.44 0.818 - - - - 0.839 0.783 - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
59. grin1a ENSDARG00000027828 1327 2.435 0.797 - - - - 0.796 0.842 - - glutamate receptor, ionotropic, N-methyl D-aspartate 1a [Source:ZFIN;Acc:ZDB-GENE-051202-1]
60. cldn19 ENSDARG00000044569 281 2.434 0.738 0.897 - - - 0.799 - - - claudin 19 [Source:ZFIN;Acc:ZDB-GENE-050417-242]
61. mllt11 ENSDARG00000071026 2518 2.433 0.748 - - - - 0.931 0.754 - - MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
62. nadl1.2 695 2.426 0.755 0.938 - - - 0.733 - - - neural adhesion molecule L1.2, transcript variant X1
63. adcyap1b ENSDARG00000027740 1539 2.422 0.798 0.754 - - - 0.870 - - - adenylate cyclase activating polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-041010-89]
64. nrarpb ENSDARG00000018958 6225 2.417 0.832 - - - - 0.787 0.798 - - NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
65. mdkb ENSDARG00000020708 5393 2.411 0.753 - - - - 0.895 0.763 - - midkine b [Source:ZFIN;Acc:ZDB-GENE-010131-6]
66. pax3a ENSDARG00000010192 626 2.401 0.720 - - - - 0.902 0.779 - - paired box 3a [Source:ZFIN;Acc:ZDB-GENE-980526-52]
67. spock2 ENSDARG00000075393 791 2.391 0.716 - - - - 0.884 0.791 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 [Source:ZFIN;Acc:ZDB-GENE-090312-170]
68. pou4f1 ENSDARG00000005559 821 2.39 0.729 - - - - 0.753 0.908 - - POU class 4 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-000523-2]
69. irx5b ENSDARG00000074070 459 2.383 0.752 - - - - 0.865 0.766 - - iroquois homeobox 5b [Source:ZFIN;Acc:ZDB-GENE-040628-5]
70. csdc2a ENSDARG00000041323, ENSDARG00000115932 490 2.382 - 0.860 - - - 0.706 0.816 - - cold shock domain containing C2, RNA binding a [Source:ZFIN;Acc:ZDB-GENE-040718-442]
71. prrt1 ENSDARG00000062208 368 2.38 0.772 - - - - 0.814 0.794 - - proline-rich transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-060503-686]
72. PHYHIP ENSDARG00000116497 456 2.376 0.734 0.782 - - - - 0.860 - - phytanoyl-CoA 2-hydroxylase interacting protein [Source:NCBI gene;Acc:100002455]
73. ppp3ca ENSDARG00000004988 615 2.376 - 0.711 - - - 0.810 0.855 - - protein phosphatase 3, catalytic subunit, alpha isozyme [Source:ZFIN;Acc:ZDB-GENE-091113-24]
74. ppp2r2ba 321 2.358 0.885 - - - - 0.721 0.752 - - protein phosphatase 2, regulatory subunit B, beta a, transcript variant X2
75. eno2 ENSDARG00000014287 2162 2.354 0.739 - - - - 0.874 0.741 - - enolase 2 [Source:ZFIN;Acc:ZDB-GENE-040704-27]
76. ric8a ENSDARG00000007247 229 2.352 0.755 - - - - 0.702 0.895 - - RIC8 guanine nucleotide exchange factor A [Source:ZFIN;Acc:ZDB-GENE-040927-18]
77. atl1 ENSDARG00000060481 251 2.349 0.751 - - - - 0.809 0.789 - - atlastin GTPase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8003]
78. atp6v0a2a ENSDARG00000035538 278 2.348 0.709 - - - - 0.762 0.877 - - ATPase H+ transporting V0 subunit a2a [Source:ZFIN;Acc:ZDB-GENE-091113-4]
79. syt3 ENSDARG00000075830 430 2.337 0.844 - - - - 0.758 0.735 - - synaptotagmin III [Source:ZFIN;Acc:ZDB-GENE-090601-1]
80. slc8a2b ENSDARG00000100592 598 2.309 0.705 - - - - 0.709 0.895 - - solute carrier family 8 (sodium/calcium exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-050419-209]
81. sept5a ENSDARG00000013843 1206 2.306 0.762 - - - - 0.830 0.714 - - septin 5a [Source:ZFIN;Acc:ZDB-GENE-030131-7868]
82. AGO1 ENSDARG00000092644 4521 2.294 0.760 - - - - 0.737 0.797 - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
83. KLHL14 ENSDARG00000045275 155 2.285 0.778 - - - - 0.724 0.783 - - kelch-like family member 14 [Source:ZFIN;Acc:ZDB-GENE-091204-223]
84. sox2 ENSDARG00000070913 2763 2.267 0.842 - - - - 0.717 0.708 - - SRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
85. cspg5a ENSDARG00000069981 1699 2.264 0.720 - - - - 0.704 0.840 - - chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
86. slc35g2b ENSDARG00000045447 378 2.255 0.753 - - - - 0.730 0.772 - - solute carrier family 35, member G2b [Source:ZFIN;Acc:ZDB-GENE-050320-142]
87. DTX4 ENSDARG00000076302 2642 2.182 0.726 - - - - 0.744 0.712 - - deltex E3 ubiquitin ligase 4 [Source:HGNC Symbol;Acc:HGNC:29151]
88. stmn4l ENSDARG00000043932 654 1.971 - - - - - 0.988 0.983 - - stathmin-like 4, like [Source:ZFIN;Acc:ZDB-GENE-040718-301]
89. SV2B SV2B 208 1.951 - - - - - 0.978 0.973 - -
90. slc6a5_1 ENSDARG00000067964, ENSDARG00000111378 1111 1.921 - - - - - 0.946 0.975 - - solute carrier family 6 (neurotransmitter transporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-050105-2]
91. sncgb ENSDARG00000109715 1014 1.918 - - - - - 0.950 0.968 - - synuclein, gamma b (breast cancer-specific protein 1) [Source:ZFIN;Acc:ZDB-GENE-050522-235]
92. SNORD18_1 SNORD18_1 5 1.913 - 0.946 - - - - 0.967 - -
93. scrt1b ENSDARG00000040214, ENSDARG00000110984 533 1.893 - - - - - 0.928 0.965 - - scratch family zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-050327-72]
94. cadm3 ENSDARG00000057013 1545 1.888 - - - - - 0.919 0.969 - - cell adhesion molecule 3 [Source:ZFIN;Acc:ZDB-GENE-060512-196]
95. nkx1.2lb ENSDARG00000099427 220 1.888 - - - - - 0.889 0.999 - - NK1 transcription factor related 2-like,b [Source:ZFIN;Acc:ZDB-GENE-040615-2]
96. otpa ENSDARG00000014201 2290 1.884 - - - - - 0.926 0.958 - - orthopedia homeobox a [Source:ZFIN;Acc:ZDB-GENE-070216-1]
97. atp2b3a ENSDARG00000043474, ENSDARG00000112865 914 1.879 - - - - - 0.987 0.892 - - ATPase plasma membrane Ca2+ transporting 3a [Source:ZFIN;Acc:ZDB-GENE-040718-174]
98. sh3gl2 sh3gl2 1305 1.878 - - - - - 0.942 0.936 - -
99. fsd1 ENSDARG00000062017 207 1.874 0.945 - - - - - 0.929 - - fibronectin type III and SPRY domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060503-218]
100. calb2a ENSDARG00000041062, ENSDARG00000110220 459 1.864 - - - - - 0.928 0.936 - - calbindin 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1677]

There are 1899 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA