Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for ddx56

Gene Name Gene ID Reads Annotation
ddx56 ENSDARG00000020913 1070 DEAD (Asp-Glu-Ala-Asp) box helicase 56 [Source:ZFIN;Acc:ZDB-GENE-040825-3]










Genes with expression patterns similar to ddx56

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ddx56 ENSDARG00000020913 1070 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 DEAD (Asp-Glu-Ala-Asp) box helicase 56 [Source:ZFIN;Acc:ZDB-GENE-040825-3]
2. chchd1 ENSDARG00000029100 2121 2.278 - 0.771 0.738 0.769 - - - - - coiled-coil-helix-coiled-coil-helix domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060810-176]
3. tmem161b ENSDARG00000055989 680 1.703 - 0.791 - - - - - 0.912 - transmembrane protein 161B [Source:ZFIN;Acc:ZDB-GENE-040426-2693]
4. POLDIP3 ENSDARG00000099375 832 1.674 - 0.850 - - - 0.824 - - - polymerase (DNA-directed), delta interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-120201-2]
5. HYKK HYKK 261 1.664 - - - - - - 0.739 0.925 -
6. commd1 ENSDARG00000031203 340 1.647 - - - - - - 0.718 0.929 - copper metabolism (Murr1) domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060512-329]
7. ctdspla ENSDARG00000071673 1447 1.639 - 0.752 - - - - - 0.887 - CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like a [Source:ZFIN;Acc:ZDB-GENE-060825-333]
8. pcdh10a ENSDARG00000099729 2214 1.635 - 0.841 - - - - - 0.794 - protocadherin 10a [Source:ZFIN;Acc:ZDB-GENE-020731-1]
9. ada ENSDARG00000003113 228 1.634 - - - - - 0.765 - 0.869 - adenosine deaminase [Source:ZFIN;Acc:ZDB-GENE-040718-393]
10. setx ENSDARG00000022996 385 1.632 - - - 0.721 - - - 0.911 - senataxin [Source:ZFIN;Acc:ZDB-GENE-070402-1]
11. si:dkey-14k9.3 ENSDARG00000045595 256 1.622 - - - 0.771 - - - 0.851 - si:dkey-14k9.3 [Source:ZFIN;Acc:ZDB-GENE-030131-2893]
12. hccs hccs 1758 1.611 - - - 0.752 - - - 0.859 -
13. mrpl37 ENSDARG00000062916 1600 1.601 - - - - - 0.815 - 0.786 - mitochondrial ribosomal protein L37 [Source:ZFIN;Acc:ZDB-GENE-050309-20]
14. endog ENSDARG00000058865 679 1.601 - 0.794 - - - - - 0.807 - endonuclease G [Source:ZFIN;Acc:ZDB-GENE-050522-402]
15. C22H6orf89 C22H6orf89 1076 1.596 - 0.745 - - - - - 0.851 -
16. uchl5 ENSDARG00000103404, ENSDARG00000110434 4029 1.584 - 0.837 - - - - - - 0.747 ubiquitin carboxyl-terminal hydrolase L5 [Source:ZFIN;Acc:ZDB-GENE-040426-2051]
17. casp7 ENSDARG00000091836 657 1.567 - 0.751 - - - - - 0.816 - caspase 7, apoptosis-related cysteine peptidase [Source:ZFIN;Acc:ZDB-GENE-050522-506]
18. dnajc18 ENSDARG00000056005 8084 1.563 0.741 - - - - - - 0.822 - DnaJ (Hsp40) homolog, subfamily C, member 18 [Source:ZFIN;Acc:ZDB-GENE-030131-8019]
19. pgm3 ENSDARG00000024654 366 1.554 - - - - - 0.800 - 0.754 - phosphoglucomutase 3 [Source:ZFIN;Acc:ZDB-GENE-041024-13]
20. aldh16a1 ENSDARG00000037935 617 1.553 - 0.719 - - - - 0.834 - - aldehyde dehydrogenase 16 family, member A1 [Source:ZFIN;Acc:ZDB-GENE-070112-2062]
21. ZNF70_2 ZNF70_2 1866 1.549 - 0.776 - - - - 0.773 - -
22. eapp ENSDARG00000017272 404 1.548 - - - 0.743 - - - 0.805 - e2f-associated phosphoprotein [Source:ZFIN;Acc:ZDB-GENE-030131-5529]
23. CABZ01080590.2 CABZ01080590.2 2038 1.537 - 0.797 - - - - - 0.740 -
24. mrps25 ENSDARG00000041306 3654 1.537 - 0.812 - - - - - 0.725 - mitochondrial ribosomal protein S25 [Source:ZFIN;Acc:ZDB-GENE-050417-52]
25. pgd ENSDARG00000015343, ENSDARG00000117150 2512 1.53 - 0.778 - 0.752 - - - - - phosphogluconate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-040426-2807]
26. NTAN1 ENSDARG00000105182 844 1.53 - 0.746 - - - - - 0.784 - N-terminal asparagine amidase [Source:ZFIN;Acc:ZDB-GENE-040426-1896]
27. srfa ENSDARG00000053918 1773 1.52 0.736 - - - - - - 0.784 - serum response factor a [Source:ZFIN;Acc:ZDB-GENE-990714-29]
28. RAC1 RAC1 2008 1.519 0.723 - - 0.796 - - - - -
29. usf2 ENSDARG00000020228 2667 1.514 - 0.761 - - - - - 0.753 - upstream transcription factor 2, c-fos interacting [Source:ZFIN;Acc:ZDB-GENE-030131-8475]
30. atxn2l ENSDARG00000011597, ENSDARG00000112336 2104 1.514 - 0.747 - - - - 0.767 - - ataxin 2-like [Source:ZFIN;Acc:ZDB-GENE-030131-3246]
31. mmgt1 ENSDARG00000010553, ENSDARG00000109407 2992 1.513 - 0.784 - - - - - 0.729 - membrane magnesium transporter 1 [Source:ZFIN;Acc:ZDB-GENE-040801-65]
32. sox7 ENSDARG00000030125 806 1.512 0.706 0.806 - - - - - - - SRY (sex determining region Y)-box 7 [Source:ZFIN;Acc:ZDB-GENE-040109-4]
33. tgfbr3 ENSDARG00000099979, ENSDARG00000113424, ENSDARG00000115111 910 1.505 - - - - - 0.734 - 0.771 - transforming growth factor, beta receptor III [Source:ZFIN;Acc:ZDB-GENE-120215-125]
34. creld2 ENSDARG00000029071, ENSDARG00000116264 333 1.504 - 0.725 - 0.779 - - - - - cysteine-rich with EGF-like domains 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1626]
35. C11H9orf89 C11H9orf89 477 1.503 - 0.767 - - - 0.736 - - -
36. ankrd50l ENSDARG00000007077 1115 1.499 - 0.724 - 0.775 - - - - - ankyrin repeat domain 50-like [Source:ZFIN;Acc:ZDB-GENE-041008-117]
37. si:ch211-120e1.6 si:ch211-120e1.6 292 1.496 - 0.723 - 0.773 - - - - -
38. map2k2a ENSDARG00000006609 856 1.494 - 0.765 - - - 0.729 - - - mitogen-activated protein kinase kinase 2a [Source:ZFIN;Acc:ZDB-GENE-041027-1]
39. rassf1 ENSDARG00000004840 1248 1.493 - - - - - 0.753 - 0.740 - Ras association (RalGDS/AF-6) domain family 1 [Source:ZFIN;Acc:ZDB-GENE-040912-14]
40. si:dkey-176f19.6 si:dkey-176f19.6 373 1.492 - - - 0.739 - - 0.753 - -
41. cnot3b ENSDARG00000019842 838 1.487 - - - - - 0.728 - 0.759 - CCR4-NOT transcription complex, subunit 3b [Source:ZFIN;Acc:ZDB-GENE-030131-5838]
42. ck2a2a ck2a2a 1695 1.486 - - - - - 0.748 - 0.738 -
43. si:dkey-153m14.1 si:dkey-153m14.1 4591 1.479 - - - - - - 0.715 0.764 -
44. smad3b ENSDARG00000010207 951 1.465 - - - 0.761 - - - 0.704 - SMAD family member 3b [Source:ZFIN;Acc:ZDB-GENE-030128-4]
45. klf15 ENSDARG00000091127 1037 1.459 - 0.707 - - - - - 0.752 - Kruppel-like factor 15 [Source:ZFIN;Acc:ZDB-GENE-030131-7844]
46. snrka ENSDARG00000070832 1366 1.459 - 0.759 - - - - - 0.700 - SNF related kinase a [Source:ZFIN;Acc:ZDB-GENE-040718-84]
47. TSSC4 ENSDARG00000036144 1994 1.458 - 0.755 - - - - 0.703 - - tumor suppressing subtransferable candidate 4 [Source:ZFIN;Acc:ZDB-GENE-060825-263]
48. csde1_1 ENSDARG00000074758 2759 1.456 - - - 0.711 - - 0.745 - - cold shock domain containing E1, RNA-binding [Source:ZFIN;Acc:ZDB-GENE-030131-8623]
49. ostf1_1 ENSDARG00000091555, ENSDARG00000114550 75 1.456 - 0.725 - - - 0.731 - - - osteoclast stimulating factor 1 [Source:ZFIN;Acc:ZDB-GENE-040625-157]
50. FRMD4A ENSDARG00000042249 2883 1.453 - 0.734 - - - - 0.719 - - FERM domain containing 4A [Source:HGNC Symbol;Acc:HGNC:25491]
51. TRIM35_10 TRIM35_10 484 1.439 - 0.720 - - - 0.719 - - -
52. casc3 ENSDARG00000029911 1174 1.425 - 0.701 - 0.724 - - - - - casc3, exon junction complex subunit [Source:ZFIN;Acc:ZDB-GENE-040308-2]
53. atrip ENSDARG00000063076 385 1.415 - - - 0.715 - - 0.700 - - ATR interacting protein [Source:ZFIN;Acc:ZDB-GENE-050208-331]
54. NHSL2 ENSDARG00000089066 374 0.956 - - - - - - - 0.956 - NHS-like 2 [Source:ZFIN;Acc:ZDB-GENE-130530-951]
55. dachd ENSDARG00000069440 271 0.943 - - - - - - - 0.943 - dachshund d [Source:ZFIN;Acc:ZDB-GENE-070427-2]
56. si:ch211-216l23.2 ENSDARG00000069122, ENSDARG00000115838 1365 0.94 - - - - - - - 0.940 - si:ch211-216l23.2 [Source:ZFIN;Acc:ZDB-GENE-030131-3806]
57. zgc:174877 ENSDARG00000079278 143 0.939 - - - - - - - 0.939 - zgc:174877 [Source:ZFIN;Acc:ZDB-GENE-041008-66]
58. CR381544.1 ENSDARG00000088187 821 0.937 - - - - - - - 0.937 -
59. git2a ENSDARG00000061915 884 0.937 - - - - - - - 0.937 - G protein-coupled receptor kinase interacting ArfGAP 2a [Source:ZFIN;Acc:ZDB-GENE-060526-267]
60. POLQ ENSDARG00000044622, ENSDARG00000110374 94 0.937 - - - - - - - 0.937 - polymerase (DNA directed), theta [Source:ZFIN;Acc:ZDB-GENE-040724-232]
61. nrxn2b ENSDARG00000063150 343 0.937 - - - - - - - 0.937 - neurexin 2b [Source:ZFIN;Acc:ZDB-GENE-070206-7]
62. pdxka ENSDARG00000088959 217 0.936 - - - - - - - 0.936 - pyridoxal (pyridoxine, vitamin B6) kinase a [Source:ZFIN;Acc:ZDB-GENE-030131-8376]
63. mea1 ENSDARG00000039820 589 0.936 - - - - - - - 0.936 - male-enhanced antigen 1 [Source:ZFIN;Acc:ZDB-GENE-070424-117]
64. dclk1a ENSDARG00000018856 177 0.936 - - - - - - - 0.936 - doublecortin-like kinase 1a [Source:ZFIN;Acc:ZDB-GENE-061013-124]
65. TTF1_4 TTF1_4 504 0.936 - - - - - - - 0.936 -
66. CIT CIT 212 0.935 - - - - - - - 0.935 -
67. SHANK1 ENSDARG00000060539 102 0.935 - - - - - - - 0.935 - SH3 and multiple ankyrin repeat domains 1 [Source:ZFIN;Acc:ZDB-GENE-130530-691]
68. CABZ01080599.2 CABZ01080599.2 192 0.934 - - - - - - - 0.934 -
69. si:dkey-17e6.2 si:dkey-17e6.2 72 0.933 - - - - - - - 0.933 -
70. TFPT ENSDARG00000089572, ENSDARG00000111694 112 0.933 - - - - - - - 0.933 - TCF3 (E2A) fusion partner [Source:ZFIN;Acc:ZDB-GENE-140106-241]
71. ncoa6 ENSDARG00000071272 759 0.933 - - - - - - - 0.933 - nuclear receptor coactivator 6 [Source:ZFIN;Acc:ZDB-GENE-080403-12]
72. nrp2b ENSDARG00000038446 783 0.933 - - - - - - - 0.933 - neuropilin 2b [Source:ZFIN;Acc:ZDB-GENE-040611-3]
73. mir130b 180 0.932 - - - - - - - 0.932 - microRNA 130b
74. pars2 ENSDARG00000044404, ENSDARG00000109425 271 0.931 - - - - - - - 0.931 - prolyl-tRNA synthetase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-030131-4219]
75. si:ch73-387e10.3 si:ch73-387e10.3 517 0.931 - - - - - - - 0.931 -
76. b3galtla b3galtla 111 0.93 - - - - - - - 0.930 -
77. pnn ENSDARG00000015851 1269 0.93 - - - - - - - 0.930 - pinin, desmosome associated protein [Source:ZFIN;Acc:ZDB-GENE-060519-3]
78. ptpdc1 ptpdc1 281 0.93 - - - - - - - 0.930 -
79. slc6a6a ENSDARG00000012534 183 0.93 - - - - - - - 0.930 - solute carrier family 6 (neurotransmitter transporter), member 6a [Source:ZFIN;Acc:ZDB-GENE-081104-1]
80. jam3a ENSDARG00000114589 630 0.929 - - - - - - - 0.929 - junctional adhesion molecule 3a [Source:ZFIN;Acc:ZDB-GENE-070424-177]
81. usp4 ENSDARG00000014770 1684 0.929 - - - - - - - 0.929 - ubiquitin specific peptidase 4 (proto-oncogene) [Source:ZFIN;Acc:ZDB-GENE-041008-187]
82. GDPD4_1 GDPD4_1 190 0.928 - - - - - - - 0.928 -
83. si:ch73-167f18.3 si:ch73-167f18.3 78 0.928 - - - - - - - 0.928 -
84. xrcc6bp1 662 0.928 - - - - - - - 0.928 - XRCC6 binding protein 1
85. hn1a hn1a 115 0.928 - - - - - - - 0.928 -
86. pus7 ENSDARG00000031774 195 0.928 - - - - - - - 0.928 - pseudouridylate synthase 7 [Source:ZFIN;Acc:ZDB-GENE-060620-1]
87. hoxa4a 37 0.928 - - - - - - - 0.928 - homeobox A4a, transcript variant X4
88. adcyap1a ENSDARG00000004015 67 0.928 - - - - - - - 0.928 - adenylate cyclase activating polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-020809-4]
89. IKZF4 ENSDARG00000037068 36 0.928 - - - - - - - 0.928 - IKAROS family zinc finger 4 [Source:ZFIN;Acc:ZDB-GENE-180319-1]
90. pde6b ENSDARG00000011671 44 0.927 - - - - - - - 0.927 - phosphodiesterase 6B, cGMP-specific, rod, beta [Source:ZFIN;Acc:ZDB-GENE-090421-2]
91. C18H11orf58 C18H11orf58 1293 0.927 - - - - - - - 0.927 -
92. pex5la ENSDARG00000022518, ENSDARG00000109971, ENSDARG00000110029, ENSDARG00000112628 28 0.927 - - - - - - - 0.927 - peroxisomal biogenesis factor 5-like a [Source:ZFIN;Acc:ZDB-GENE-070705-298]
93. pard3 pard3 161 0.927 - - - - - - - 0.927 -
94. rpgra ENSDARG00000056617 77 0.927 - - - - - - - 0.927 - retinitis pigmentosa GTPase regulator a [Source:ZFIN;Acc:ZDB-GENE-070912-423]
95. si:dkey-100h21.2 si:dkey-100h21.2 30 0.927 - - - - - - - 0.927 -
96. rwdd2b ENSDARG00000055426 294 0.926 - - - - - - - 0.926 - RWD domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-041001-119]
97. si:dkey-157e10.7 si:dkey-157e10.7 105 0.926 - - - - - - - 0.926 -
98. cyp4v8 ENSDARG00000062132, ENSDARG00000111608 92 0.926 - - - - - - - 0.926 - cytochrome P450, family 4, subfamily V, polypeptide 8 [Source:ZFIN;Acc:ZDB-GENE-061103-601]
99. aatkb ENSDARG00000104442 392 0.925 - - - - - - - 0.925 - apoptosis-associated tyrosine kinase b [Source:ZFIN;Acc:ZDB-GENE-100812-6]
100. zgc:162948 ENSDARG00000053695 301 0.925 - - - - - - - 0.925 - zgc:162948 [Source:ZFIN;Acc:ZDB-GENE-070424-46]

There are 1282 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA