Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for ddx55

Gene Name Gene ID Reads Annotation
ddx55 ENSDARG00000009864 415 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Source:ZFIN;Acc:ZDB-GENE-021212-1]










Genes with expression patterns similar to ddx55

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ddx55 ENSDARG00000009864 415 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Source:ZFIN;Acc:ZDB-GENE-021212-1]
2. enah ENSDARG00000032049 1526 2.277 - 0.735 - 0.811 - - 0.731 - - enabled homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010323-11]
3. klc3 ENSDARG00000055965 116 2.236 - 0.726 - 0.722 - - 0.788 - - kinesin light chain 3 [Source:ZFIN;Acc:ZDB-GENE-060929-772]
4. ankrd1a ENSDARG00000075263, ENSDARG00000110628, ENSDARG00000114111 252 1.797 - - - - - 0.942 0.855 - - ankyrin repeat domain 1a (cardiac muscle) [Source:ZFIN;Acc:ZDB-GENE-100405-1]
5. ppp2r3a ENSDARG00000077722 7 1.701 - 0.797 - - - 0.904 - - - protein phosphatase 2, regulatory subunit B'', alpha [Source:ZFIN;Acc:ZDB-GENE-070912-646]
6. creg1 ENSDARG00000105154 843 1.662 - - - 0.792 - 0.870 - - - cellular repressor of E1A-stimulated genes 1 [Source:ZFIN;Acc:ZDB-GENE-070112-2042]
7. asb2b ENSDARG00000102490 311 1.65 - - - - - 0.848 0.802 - - ankyrin repeat and SOCS box containing 2b [Source:ZFIN;Acc:ZDB-GENE-040426-20]
8. ube2d4 ENSDARG00000015057 1089 1.639 - 0.744 - - - - 0.895 - - ubiquitin-conjugating enzyme E2D 4 (putative) [Source:ZFIN;Acc:ZDB-GENE-070424-86]
9. myo5aa ENSDARG00000061635, ENSDARG00000116722 280 1.638 - - - - - 0.855 0.783 - - myosin VAa [Source:ZFIN;Acc:ZDB-GENE-041027-2]
10. LIMD1_1 LIMD1_1 348 1.637 - 0.767 - - - - 0.870 - -
11. commd9 ENSDARG00000094258, ENSDARG00000111031 49 1.617 - 0.715 - - - 0.902 - - - COMM domain containing 9 [Source:ZFIN;Acc:ZDB-GENE-070424-139]
12. pvalb7 ENSDARG00000034705, ENSDARG00000109277 221 1.604 - - - - - 0.874 0.730 - - parvalbumin 7 [Source:ZFIN;Acc:ZDB-GENE-040718-285]
13. jagn1a ENSDARG00000041071, ENSDARG00000109427 397 1.604 - 0.879 - - - - 0.725 - - jagunal homolog 1a [Source:ZFIN;Acc:ZDB-GENE-041010-80]
14. PBX1A ENSDARG00000100494 704 1.594 - 0.778 - - - - 0.816 - - pre-B-cell leukemia homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-000405-1]
15. prx ENSDARG00000017246 6183 1.588 - 0.861 - - - - 0.727 - - periaxin [Source:ZFIN;Acc:ZDB-GENE-030131-5790]
16. smarcd3a ENSDARG00000038786 2894 1.583 - 0.705 - - - - 0.878 - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3a [Source:ZFIN;Acc:ZDB-GENE-070912-491]
17. CRAT CRAT 521 1.582 - 0.820 - - - - 0.762 - -
18. CCDC84 ENSDARG00000059606 65 1.578 - 0.860 - - - - 0.718 - - coiled-coil domain containing 84 [Source:ZFIN;Acc:ZDB-GENE-060929-1174]
19. pvrl4 155 1.574 - 0.704 - - - 0.870 - - - poliovirus receptor-related 4
20. speg speg 334 1.564 - - - - - 0.767 0.797 - -
21. foxd1 ENSDARG00000029179 726 1.563 - 0.743 - - - - 0.820 - - forkhead box D1 [Source:ZFIN;Acc:ZDB-GENE-040426-2094]
22. pebp1 ENSDARG00000042069 6651 1.556 - 0.724 - - - - 0.832 - - phosphatidylethanolamine binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2621]
23. ckmt2 ckmt2 768 1.554 - 0.788 - - - - 0.766 - -
24. hsd17b7 ENSDARG00000088140 185 1.55 - 0.749 - - - 0.801 - - - hydroxysteroid (17-beta) dehydrogenase 7 [Source:ZFIN;Acc:ZDB-GENE-061013-378]
25. casq1b ENSDARG00000018105 2643 1.548 - 0.795 - - - - 0.753 - - calsequestrin 1b [Source:ZFIN;Acc:ZDB-GENE-060929-1070]
26. CT573433.2 CT573433.2 115 1.545 - 0.704 - - - - 0.841 - -
27. CABZ01030107.1 ENSDARG00000058631 52 1.545 - 0.704 - - - - 0.841 - -
28. cacnb1 ENSDARG00000002167 1402 1.533 - 0.794 - - - - 0.739 - - calcium channel, voltage-dependent, beta 1 subunit [Source:ZFIN;Acc:ZDB-GENE-040718-399]
29. camk2a ENSDARG00000053617 950 1.531 - 0.738 - - - - 0.793 - - calcium/calmodulin-dependent protein kinase II alpha [Source:ZFIN;Acc:ZDB-GENE-051113-72]
30. ift81 ENSDARG00000007444 97 1.528 - 0.776 - - - - 0.752 - - intraflagellar transport 81 homolog [Source:ZFIN;Acc:ZDB-GENE-040714-3]
31. NRAP ENSDARG00000009341 3565 1.527 - 0.726 - - - - 0.801 - - nebulin-related anchoring protein [Source:ZFIN;Acc:ZDB-GENE-060616-224]
32. zgc:173702 ENSDARG00000110229 411 1.522 - 0.731 - - - - 0.791 - - zgc:173702 [Source:ZFIN;Acc:ZDB-GENE-080208-3]
33. xirp2a ENSDARG00000071113 7113 1.52 - 0.741 - - - - 0.779 - - xin actin binding repeat containing 2a [Source:ZFIN;Acc:ZDB-GENE-040108-7]
34. fgf13a ENSDARG00000035056 752 1.52 - 0.727 - - - - 0.793 - - fibroblast growth factor 13a [Source:ZFIN;Acc:ZDB-GENE-041114-101]
35. synpo2b ENSDARG00000077157 1009 1.514 - 0.723 - - - - 0.791 - - synaptopodin 2b [Source:ZFIN;Acc:ZDB-GENE-101230-1]
36. phex ENSDARG00000062363 1413 1.512 - 0.763 - - - - 0.749 - - phosphate regulating endopeptidase homolog, X-linked [Source:ZFIN;Acc:ZDB-GENE-030103-2]
37. si:ch211-141e20.2 ENSDARG00000093349 61 1.511 - 0.704 - - - 0.807 - - - si:ch211-141e20.2 [Source:ZFIN;Acc:ZDB-GENE-070912-75]
38. HSPA4L ENSDARG00000053544 363 1.501 - 0.722 - - - 0.779 - - - heat shock protein 4 like [Source:ZFIN;Acc:ZDB-GENE-030131-2412]
39. nos1apb ENSDARG00000058701 148 1.493 - - - 0.721 - - 0.772 - - nitric oxide synthase 1 (neuronal) adaptor protein b [Source:ZFIN;Acc:ZDB-GENE-100824-1]
40. rd3 ENSDARG00000031600 1085 1.491 - 0.730 - - - - 0.761 - - retinal degeneration 3, GUCY2D regulator [Source:ZFIN;Acc:ZDB-GENE-040724-103]
41. si:dkey-66n24.2 si:dkey-66n24.2 69 1.489 - - - - - 0.731 0.758 - -
42. myhc4 ENSDARG00000035438 1322 1.486 - 0.715 - - - - 0.771 - - myosin heavy chain 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6206]
43. BX294434.1 ENSDARG00000061272 6493 1.48 - 0.771 - - - - 0.709 - - solute carrier family 41 member 1 [Source:NCBI gene;Acc:564564]
44. rbm24b ENSDARG00000031809, ENSDARG00000110167 2404 1.479 - - - - - 0.777 0.702 - - RNA binding motif protein 24b [Source:ZFIN;Acc:ZDB-GENE-060312-43]
45. tnw 16679 1.478 - 0.718 - - - - 0.760 - - tenascin W, transcript variant X2
46. palm1a ENSDARG00000026882, ENSDARG00000115356 3425 1.471 - 0.745 - - - - 0.726 - - paralemmin 1a [Source:ZFIN;Acc:ZDB-GENE-050417-409]
47. si:ch211-14c7.2 ENSDARG00000094522 369 1.464 - 0.711 - - - - 0.753 - - si:ch211-14c7.2 [Source:ZFIN;Acc:ZDB-GENE-060503-856]
48. nmrk2 ENSDARG00000067848 10293 1.463 - 0.735 - - - - 0.728 - - nicotinamide riboside kinase 2 [Source:ZFIN;Acc:ZDB-GENE-040912-44]
49. cldn5b ENSDARG00000014059 654 1.463 - 0.749 - - - - 0.714 - - claudin 5b [Source:ZFIN;Acc:ZDB-GENE-041010-140]
50. COL22A1 COL22A1 4473 1.446 - 0.725 - - - - 0.721 - -
51. xkr8.2 ENSDARG00000076820 51 1.428 - 0.704 - 0.724 - - - - - XK, Kell blood group complex subunit-related family, member 8, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-110106-2]
52. pygma ENSDARG00000055518 15972 1.428 - 0.713 - - - - 0.715 - - phosphorylase, glycogen, muscle A [Source:ZFIN;Acc:ZDB-GENE-050522-482]
53. TUBB2A TUBB2A 142 1.423 - 0.704 - - - - 0.719 - -
54. NTRK3 NTRK3 163 1.422 - 0.704 - - - - 0.718 - -
55. klhl22 ENSDARG00000088807 324 1.411 - - - 0.705 - - 0.706 - - kelch-like family member 22 [Source:ZFIN;Acc:ZDB-GENE-081104-154]
56. neurod4 ENSDARG00000003469, ENSDARG00000117149 1732 0.965 - 0.965 - - - - - - - neuronal differentiation 4 [Source:ZFIN;Acc:ZDB-GENE-030730-1]
57. tnni3k ENSDARG00000086933 37 0.935 - - - - - 0.935 - - - TNNI3 interacting kinase [Source:ZFIN;Acc:ZDB-GENE-081104-399]
58. C3H17orf75 C3H17orf75 432 0.935 - 0.935 - - - - - - -
59. RPS11 ENSDARG00000053058 32 0.93 - - - - - 0.930 - - - ribosomal protein S11 [Source:ZFIN;Acc:ZDB-GENE-040426-2701]
60. C12H10orf90 C12H10orf90 143 0.93 - 0.930 - - - - - - -
61. six4b ENSDARG00000031983 265 0.928 - - - - - - 0.928 - - SIX homeobox 4b [Source:ZFIN;Acc:ZDB-GENE-010201-1]
62. ints7 ENSDARG00000019300 273 0.926 - - - - - 0.926 - - - integrator complex subunit 7 [Source:ZFIN;Acc:ZDB-GENE-021220-6]
63. si:dkey-254e13.6 ENSDARG00000088301 191 0.924 - - - - - 0.924 - - - si:dkey-254e13.6 [Source:ZFIN;Acc:ZDB-GENE-070705-420]
64. rhoq ENSDARG00000025953 674 0.922 - 0.922 - - - - - - - ras homolog family member Q [Source:ZFIN;Acc:ZDB-GENE-030131-5721]
65. si:dkey-240h12.4 ENSDARG00000034210 114 0.919 - - - - - 0.919 - - - si:dkey-240h12.4 [Source:ZFIN;Acc:ZDB-GENE-070705-406]
66. CR933820.2 CR933820.2 152 0.919 - - - - - 0.919 - - -
67. fscn2b ENSDARG00000074396 177 0.917 - - - - - 0.917 - - - fascin actin-bundling protein 2b, retinal [Source:ZFIN;Acc:ZDB-GENE-040426-1740]
68. scn8aa ENSDARG00000005775 792 0.917 - 0.917 - - - - - - - sodium channel, voltage gated, type VIII, alpha subunit a [Source:ZFIN;Acc:ZDB-GENE-000828-1]
69. ndel1a ENSDARG00000010953 292 0.914 - - - - - 0.914 - - - nudE neurodevelopment protein 1-like 1a [Source:ZFIN;Acc:ZDB-GENE-040115-2]
70. GFRAL ENSDARG00000089709 167 0.914 - - - - - 0.914 - - - GDNF family receptor alpha like [Source:ZFIN;Acc:ZDB-GENE-110607-2]
71. hpse ENSDARG00000063634, ENSDARG00000112827 35 0.914 - - - - - 0.914 - - - heparanase [Source:ZFIN;Acc:ZDB-GENE-041111-200]
72. pcsk1nl ENSDARG00000076170 1232 0.912 - 0.912 - - - - - - - proprotein convertase subtilisin/kexin type 1 inhibitor, like [Source:ZFIN;Acc:ZDB-GENE-090427-2]
73. mvk ENSDARG00000004130 105 0.912 - 0.912 - - - - - - - mevalonate kinase [Source:ZFIN;Acc:ZDB-GENE-041114-37]
74. MXRA5 MXRA5 58 0.912 - - - - - 0.912 - - -
75. CHL1 CHL1 1553 0.908 - 0.908 - - - - - - -
76. CABZ01059415.2 CABZ01059415.2 195 0.908 - - - - - 0.908 - - -
77. GAB3 GAB3 72 0.907 - - - - - 0.907 - - -
78. arpc5lb ENSDARG00000035433 726 0.907 - - - 0.907 - - - - - actin related protein 2/3 complex, subunit 5-like, b [Source:ZFIN;Acc:ZDB-GENE-060531-161]
79. ebp ENSDARG00000046098 502 0.904 - - - - - 0.904 - - - EBP, cholestenol delta-isomerase [Source:ZFIN;Acc:ZDB-GENE-040718-12]
80. ssbp3a ENSDARG00000058237 87 0.904 - - - - - 0.904 - - - single stranded DNA binding protein 3a [Source:ZFIN;Acc:ZDB-GENE-070705-484]
81. slc1a2b ENSDARG00000102453 3136 0.904 - 0.904 - - - - - - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
82. notum2 ENSDARG00000088411 823 0.902 - 0.902 - - - - - - - notum pectinacetylesterase 2 [Source:ZFIN;Acc:ZDB-GENE-120215-77]
83. RNF207 RNF207 9 0.902 - - - - - 0.902 - - -
84. zgc:153911 ENSDARG00000002509 110 0.901 - - - - - 0.901 - - - zgc:153911 [Source:ZFIN;Acc:ZDB-GENE-061013-174]
85. prrg2 ENSDARG00000087193 15 0.901 - - - - - 0.901 - - - proline rich Gla (G-carboxyglutamic acid) 2 [Source:ZFIN;Acc:ZDB-GENE-130625-1]
86. TULP2 TULP2 38 0.899 - - - - - 0.899 - - -
87. ache ENSDARG00000031796 1985 0.899 - - - - - - 0.899 - - acetylcholinesterase [Source:ZFIN;Acc:ZDB-GENE-010906-1]
88. vars2 ENSDARG00000056717 283 0.899 - - - - - - 0.899 - - valyl-tRNA synthetase 2, mitochondrial (putative) [Source:ZFIN;Acc:ZDB-GENE-060503-575]
89. CAMKV CAMKV 11 0.899 - - - - - 0.899 - - -
90. slc18a3a ENSDARG00000006356 1285 0.898 - 0.898 - - - - - - - solute carrier family 18 (vesicular acetylcholine transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-060929-990]
91. FBXO40_1 FBXO40_1 59 0.898 - - - - - - 0.898 - -
92. exd3 ENSDARG00000063140 119 0.898 - - - - - 0.898 - - - exonuclease 3'-5' domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-091204-349]
93. tmeff2b ENSDARG00000058699 82 0.897 - - - - - 0.897 - - - transmembrane protein with EGF-like and two follistatin-like domains 2b [Source:ZFIN;Acc:ZDB-GENE-101001-4]
94. nadl1.1 1200 0.896 - 0.896 - - - - - - - neural adhesion molecule L1.1, transcript variant X1
95. polg2 ENSDARG00000074933 117 0.896 - - - - - 0.896 - - - polymerase (DNA directed), gamma 2, accessory subunit [Source:ZFIN;Acc:ZDB-GENE-060810-116]
96. chgb ENSDARG00000076500 42 0.896 - - - - - 0.896 - - - chromogranin B [Source:ZFIN;Acc:ZDB-GENE-070705-268]
97. CU929408.1 CU929408.1 714 0.896 - - - - - 0.896 - - -
98. CU855821.2 CU855821.2 21 0.893 - - - - - 0.893 - - -
99. stx1b ENSDARG00000000503 2724 0.893 - 0.893 - - - - - - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
100. mir133b_1 671 0.892 - - - - - - 0.892 - - microRNA 133b

There are 1391 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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