Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for ddx39b

Gene Name Gene ID Reads Annotation
ddx39b ENSDARG00000036069 1151 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:ZFIN;Acc:ZDB-GENE-040426-1259]










Genes with expression patterns similar to ddx39b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ddx39b ENSDARG00000036069 1151 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:ZFIN;Acc:ZDB-GENE-040426-1259]
2. nol6 ENSDARG00000059711, ENSDARG00000115621 853 1.746 - 0.915 - - - 0.831 - - - nucleolar protein 6 (RNA-associated) [Source:ZFIN;Acc:ZDB-GENE-030131-6294]
3. gcdh gcdh 1390 1.669 - 0.907 - - - - - 0.762 -
4. nrp2b ENSDARG00000038446 783 1.648 - 0.808 - - - - - 0.840 - neuropilin 2b [Source:ZFIN;Acc:ZDB-GENE-040611-3]
5. usp4 ENSDARG00000014770 1684 1.62 - - - - - - 0.756 0.864 - ubiquitin specific peptidase 4 (proto-oncogene) [Source:ZFIN;Acc:ZDB-GENE-041008-187]
6. ccdc22 ENSDARG00000052379 2276 1.607 - 0.733 - - - - - 0.874 - coiled-coil domain containing 22 [Source:ZFIN;Acc:ZDB-GENE-050913-93]
7. reep3l reep3l 608 1.605 - - - - - 0.757 - 0.848 -
8. ptbp2b ENSDARG00000015901 2458 1.602 - 0.844 - - - - 0.758 - - polypyrimidine tract binding protein 2b [Source:ZFIN;Acc:ZDB-GENE-060810-49]
9. syncripl ENSDARG00000026723 3889 1.602 - 0.888 - - - - 0.714 - - synaptotagmin binding, cytoplasmic RNA interacting protein, like [Source:ZFIN;Acc:ZDB-GENE-030131-3104]
10. orc6 ENSDARG00000075682 1382 1.6 - - - - - 0.760 - 0.840 - origin recognition complex, subunit 6 [Source:ZFIN;Acc:ZDB-GENE-030131-2976]
11. ck2a2a ck2a2a 1695 1.591 - 0.851 - - - - - 0.740 -
12. pemt ENSDARG00000103614 474 1.582 - - - - - 0.744 - 0.838 - phosphatidylethanolamine N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-040426-719]
13. ly75 ENSDARG00000053113 196 1.582 - - - - - 0.760 - 0.822 - lymphocyte antigen 75 [Source:ZFIN;Acc:ZDB-GENE-050309-166]
14. ATP5J 343 1.58 - 0.846 - - - - - 0.734 - ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6, transcript variant X2
15. jkamp ENSDARG00000028581 893 1.577 - 0.722 - - - 0.855 - - - jnk1/mapk8 associated membrane protein [Source:ZFIN;Acc:ZDB-GENE-040718-382]
16. pex16 ENSDARG00000058202 486 1.574 - 0.704 - - - - - 0.870 - peroxisomal biogenesis factor 16 [Source:ZFIN;Acc:ZDB-GENE-050626-49]
17. xrcc6 ENSDARG00000071551, ENSDARG00000111115, ENSDARG00000114945 724 1.568 - 0.707 - - - 0.861 - - - X-ray repair complementing defective repair in Chinese hamster cells 6 [Source:ZFIN;Acc:ZDB-GENE-030131-6420]
18. tom1l2 ENSDARG00000009217, ENSDARG00000111492 1639 1.556 - 0.713 - - - 0.843 - - - target of myb1 like 2 membrane trafficking protein [Source:ZFIN;Acc:ZDB-GENE-061013-3]
19. heatr3 ENSDARG00000036076 944 1.552 - 0.817 - - - - - 0.735 - HEAT repeat containing 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1876]
20. ercc4 ENSDARG00000014161 2167 1.544 - - - - - - 0.762 0.782 - excision repair cross-complementation group 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5533]
21. COX20 ENSDARG00000099997 1451 1.543 - 0.735 - - - - - 0.808 - cytochrome c oxidase assembly factor COX20 [Source:ZFIN;Acc:ZDB-GENE-040718-467]
22. p2rx3b ENSDARG00000029718 105 1.535 - - - - - - 0.701 0.834 - purinergic receptor P2X, ligand-gated ion channel, 3b [Source:ZFIN;Acc:ZDB-GENE-030319-3]
23. rbm15b ENSDARG00000078966, ENSDARG00000112832 1888 1.534 - 0.821 - - - - - 0.713 - RNA binding motif protein 15B [Source:ZFIN;Acc:ZDB-GENE-080204-91]
24. NIPBL NIPBL 871 1.533 - 0.785 - - - 0.748 - - -
25. TTF1_4 TTF1_4 504 1.53 - - - - - - 0.702 0.828 -
26. tmem161b ENSDARG00000055989 680 1.525 - - - - - 0.709 - 0.816 - transmembrane protein 161B [Source:ZFIN;Acc:ZDB-GENE-040426-2693]
27. mrps25 ENSDARG00000041306 3654 1.524 - - - - - 0.782 - 0.742 - mitochondrial ribosomal protein S25 [Source:ZFIN;Acc:ZDB-GENE-050417-52]
28. rhoua ENSDARG00000019709 1506 1.524 - 0.725 - - - 0.799 - - - ras homolog family member Ua [Source:ZFIN;Acc:ZDB-GENE-040618-3]
29. sap30l ENSDARG00000030213 5795 1.523 - 0.731 - - - - - 0.792 - sap30-like [Source:ZFIN;Acc:ZDB-GENE-030131-5287]
30. zgc:65772 zgc:65772 2092 1.517 - 0.719 - - - 0.798 - - -
31. kcnj13 ENSDARG00000043443 700 1.51 - 0.770 - - - - - 0.740 - potassium inwardly-rectifying channel, subfamily J, member 13 [Source:ZFIN;Acc:ZDB-GENE-070129-1]
32. C22H6orf89 C22H6orf89 1076 1.509 - - - - - 0.718 - 0.791 -
33. HIP1R HIP1R 490 1.49 - 0.739 - - - 0.751 - - -
34. SPAG5 SPAG5 1117 1.486 - - - - - 0.760 0.726 - -
35. SNCAIP ENSDARG00000100198 522 1.485 - - - - - 0.760 0.725 - - synuclein, alpha interacting protein [Source:ZFIN;Acc:ZDB-GENE-080204-71]
36. polb ENSDARG00000003749 2049 1.467 - 0.719 - - - - 0.748 - - polymerase (DNA directed), beta [Source:ZFIN;Acc:ZDB-GENE-040830-1]
37. EIF4G1 EIF4G1 19676 1.437 0.721 - - - - 0.716 - - -
38. oafa ENSDARG00000075851 2015 1.43 0.706 0.724 - - - - - - - OAF homolog a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-090917-1]
39. kif5ba ENSDARG00000074131, ENSDARG00000103394 5232 1.427 - 0.704 - - - - - 0.723 - kinesin family member 5B, a [Source:ZFIN;Acc:ZDB-GENE-070629-2]
40. ZMAT1 ZMAT1 219 1.421 - - - - - 0.719 0.702 - -
41. ddx51 ENSDARG00000025854 691 0.93 - 0.930 - - - - - - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Source:ZFIN;Acc:ZDB-GENE-040927-28]
42. C1H4orf27 C1H4orf27 1961 0.919 - - - - - 0.919 - - -
43. C5HXorf56 C5HXorf56 880 0.917 - 0.917 - - - - - - -
44. zfr2 ENSDARG00000071683 780 0.896 - 0.896 - - - - - - - zinc finger RNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070705-184]
45. hnrnpa1 hnrnpa1 1302 0.895 - 0.895 - - - - - - -
46. dlat ENSDARG00000015918 657 0.895 - 0.895 - - - - - - - dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex) [Source:ZFIN;Acc:ZDB-GENE-030131-2921]
47. emilin1b ENSDARG00000026166 1530 0.893 - 0.893 - - - - - - - elastin microfibril interfacer 1b [Source:ZFIN;Acc:ZDB-GENE-060818-36]
48. FRRS1_1 FRRS1_1 831 0.891 - 0.891 - - - - - - -
49. pcnx 689 0.889 - 0.889 - - - - - - - pecanex homolog (Drosophila), transcript variant X5
50. FAM126B 588 0.888 - 0.888 - - - - - - - family with sequence similarity 126 member B
51. nfu1 ENSDARG00000068125 1743 0.888 - 0.888 - - - - - - - NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050417-365]
52. cdca5 ENSDARG00000044437 2041 0.883 - 0.883 - - - - - - - cell division cycle associated 5 [Source:ZFIN;Acc:ZDB-GENE-030131-235]
53. ACKR3 ACKR3 235 0.882 - 0.882 - - - - - - -
54. ppme1 ENSDARG00000009771 1697 0.882 - 0.882 - - - - - - - protein phosphatase methylesterase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7064]
55. mcmbp ENSDARG00000055314 731 0.878 - - - - - - - 0.878 - minichromosome maintenance complex binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-9676]
56. wdr76 ENSDARG00000053554, ENSDARG00000115151 813 0.872 - 0.872 - - - - - - - WD repeat domain 76 [Source:ZFIN;Acc:ZDB-GENE-030131-4513]
57. fam173b ENSDARG00000033451 513 0.871 - - - - - - - 0.871 - family with sequence similarity 173, member B [Source:ZFIN;Acc:ZDB-GENE-041114-90]
58. si:ch73-387e10.3 si:ch73-387e10.3 517 0.871 - - - - - - - 0.871 -
59. dnajc1 ENSDARG00000001940 2848 0.87 - 0.870 - - - - - - - DnaJ (Hsp40) homolog, subfamily C, member 1 [Source:ZFIN;Acc:ZDB-GENE-061103-529]
60. gbp ENSDARG00000040059 1939 0.869 - - - - - 0.869 - - - glycogen synthase kinase binding protein [Source:ZFIN;Acc:ZDB-GENE-990714-7]
61. tspan2 tspan2 948 0.869 - 0.869 - - - - - - -
62. sgcg_1 ENSDARG00000038107 1998 0.868 - 0.868 - - - - - - - sarcoglycan, gamma [Source:ZFIN;Acc:ZDB-GENE-030724-2]
63. stk11 ENSDARG00000046074 506 0.868 - 0.868 - - - - - - - serine/threonine kinase 11 [Source:ZFIN;Acc:ZDB-GENE-050417-383]
64. dclk1a ENSDARG00000018856 177 0.867 - - - - - - - 0.867 - doublecortin-like kinase 1a [Source:ZFIN;Acc:ZDB-GENE-061013-124]
65. hoxc6a ENSDARG00000070343 2839 0.866 - 0.866 - - - - - - - homeobox C6a [Source:ZFIN;Acc:ZDB-GENE-990415-113]
66. coil ENSDARG00000040070 863 0.865 - 0.865 - - - - - - - coilin p80 [Source:ZFIN;Acc:ZDB-GENE-000330-8]
67. ptges3b_1 ENSDARG00000089626 1670 0.864 - 0.864 - - - - - - - prostaglandin E synthase 3b (cytosolic) [Source:ZFIN;Acc:ZDB-GENE-040625-144]
68. rhbdd2 ENSDARG00000092463 937 0.863 - - - - - - - 0.863 - rhomboid domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-091204-359]
69. si:ch211-216l23.2 ENSDARG00000069122, ENSDARG00000115838 1365 0.862 - - - - - - - 0.862 - si:ch211-216l23.2 [Source:ZFIN;Acc:ZDB-GENE-030131-3806]
70. HYKK HYKK 261 0.862 - - - - - - - 0.862 -
71. apool ENSDARG00000039374, ENSDARG00000111985 482 0.862 - 0.862 - - - - - - - apolipoprotein O-like [Source:ZFIN;Acc:ZDB-GENE-050327-76]
72. csgalnact2 ENSDARG00000061400 741 0.861 - 0.861 - - - - - - - chondroitin sulfate N-acetylgalactosaminyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5186]
73. tmem150a tmem150a 543 0.86 - 0.860 - - - - - - -
74. rilpl2 ENSDARG00000024818, ENSDARG00000112872, ENSDARG00000114989 343 0.86 - - - - - 0.860 - - - Rab interacting lysosomal protein-like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6682]
75. cbx6a ENSDARG00000071051 379 0.86 - - - - - 0.860 - - - chromobox homolog 6a [Source:ZFIN;Acc:ZDB-GENE-040808-26]
76. spock3 ENSDARG00000070266, ENSDARG00000110158 934 0.859 - 0.859 - - - - - - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 [Source:ZFIN;Acc:ZDB-GENE-090311-24]
77. pigo ENSDARG00000011743 928 0.858 - - - - - 0.858 - - - phosphatidylinositol glycan anchor biosynthesis, class O [Source:ZFIN;Acc:ZDB-GENE-091204-80]
78. slc25a11 ENSDARG00000035741 3377 0.857 - 0.857 - - - - - - - solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 [Source:ZFIN;Acc:ZDB-GENE-040625-79]
79. SRPK2 446 0.857 - - - - - - - 0.857 - SRSF protein kinase 2, transcript variant X4
80. fkbp7 ENSDARG00000010962 2986 0.857 - 0.857 - - - - - - - FK506 binding protein 7 [Source:ZFIN;Acc:ZDB-GENE-030616-182]
81. gpam ENSDARG00000074169 488 0.857 - 0.857 - - - - - - - glycerol-3-phosphate acyltransferase, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-101026-1]
82. eva1ba ENSDARG00000102701 1480 0.856 - 0.856 - - - - - - - eva-1 homolog Ba (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-030131-8941]
83. CWC15 ENSDARG00000013382 8969 0.856 - 0.856 - - - - - - - CWC15 spliceosome-associated protein homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040625-10]
84. tex261 ENSDARG00000044584 513 0.856 - 0.856 - - - - - - - testis expressed 261 [Source:ZFIN;Acc:ZDB-GENE-050522-400]
85. rab33ba ENSDARG00000052290 914 0.856 - 0.856 - - - - - - - RAB33B, member RAS oncogene family a [Source:ZFIN;Acc:ZDB-GENE-050809-122]
86. sh3pxd2aa ENSDARG00000060148 913 0.855 - 0.855 - - - - - - - SH3 and PX domains 2Aa [Source:ZFIN;Acc:ZDB-GENE-060503-271]
87. CR381544.1 ENSDARG00000088187 821 0.854 - - - - - - - 0.854 -
88. uhrf1 ENSDARG00000103409 3282 0.854 - 0.854 - - - - - - - ubiquitin-like with PHD and ring finger domains 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2039]
89. commd1 ENSDARG00000031203 340 0.853 - - - - - - - 0.853 - copper metabolism (Murr1) domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060512-329]
90. egfl7 ENSDARG00000100657 776 0.853 - 0.853 - - - - - - - EGF-like-domain, multiple 7 [Source:ZFIN;Acc:ZDB-GENE-040429-2]
91. prpf4bb ENSDARG00000040310 2260 0.853 - 0.853 - - - - - - - pre-mRNA processing factor 4Bb [Source:ZFIN;Acc:ZDB-GENE-040426-2799]
92. insra ENSDARG00000011948 1258 0.853 - 0.853 - - - - - - - insulin receptor a [Source:ZFIN;Acc:ZDB-GENE-020503-3]
93. casp2 ENSDARG00000062052 559 0.853 - 0.853 - - - - - - - caspase 2, apoptosis-related cysteine peptidase [Source:ZFIN;Acc:ZDB-GENE-030825-3]
94. eif2d ENSDARG00000012929 2624 0.853 - 0.853 - - - - - - - eukaryotic translation initiation factor 2D [Source:ZFIN;Acc:ZDB-GENE-040426-1226]
95. NHSL2 ENSDARG00000089066 374 0.852 - - - - - - - 0.852 - NHS-like 2 [Source:ZFIN;Acc:ZDB-GENE-130530-951]
96. bcar3 ENSDARG00000016981 714 0.852 - - - - - 0.852 - - - BCAR3, NSP family adaptor protein [Source:ZFIN;Acc:ZDB-GENE-080513-4]
97. rhogd ENSDARG00000030608, ENSDARG00000112157 599 0.852 - 0.852 - - - - - - - ras homolog gene family, member Gd [Source:ZFIN;Acc:ZDB-GENE-040426-1504]
98. hccs hccs 1758 0.85 - - - - - - - 0.850 -
99. rpa3 ENSDARG00000002613 2923 0.85 - 0.850 - - - - - - - replication protein A3 [Source:ZFIN;Acc:ZDB-GENE-040426-977]
100. tmem165 ENSDARG00000034600 1174 0.85 - 0.850 - - - - - - - transmembrane protein 165 [Source:ZFIN;Acc:ZDB-GENE-030131-3222]

There are 948 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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