Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for ddx28

Gene Name Gene ID Reads Annotation
ddx28 ENSDARG00000060411, ENSDARG00000111974 108 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 [Source:ZFIN;Acc:ZDB-GENE-061013-64]










Genes with expression patterns similar to ddx28

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ddx28 ENSDARG00000060411, ENSDARG00000111974 108 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 [Source:ZFIN;Acc:ZDB-GENE-061013-64]
2. ARMCX3 ARMCX3 328 1.655 - 0.820 - - - 0.835 - - -
3. si:dkey-79c1.1 ENSDARG00000093179 11 1.604 - 0.861 - - - - - 0.743 - si:dkey-79c1.1 [Source:ZFIN;Acc:ZDB-GENE-060531-153]
4. fastkd3 ENSDARG00000100440 144 1.554 0.824 - - 0.730 - - - - - FAST kinase domains 3 [Source:ZFIN;Acc:ZDB-GENE-050208-273]
5. ADRA1B ADRA1B 319 1.55 - 0.712 - - - - 0.838 - -
6. itgb6 ENSDARG00000002494 559 1.543 - - - - - 0.793 0.750 - - integrin, beta 6 [Source:ZFIN;Acc:ZDB-GENE-100812-2]
7. si:dkey-3d4.3 ENSDARG00000074079 365 1.44 - 0.716 - - - - 0.724 - - si:dkey-3d4.3 [Source:ZFIN;Acc:ZDB-GENE-070912-527]
8. tbcd ENSDARG00000098749 128 0.959 - 0.959 - - - - - - - tubulin folding cofactor D [Source:ZFIN;Acc:ZDB-GENE-060823-1]
9. brd1a ENSDARG00000013596, ENSDARG00000116694 547 0.939 - 0.939 - - - - - - - bromodomain containing 1a [Source:ZFIN;Acc:ZDB-GENE-041008-168]
10. zgc:113425 ENSDARG00000026616 29 0.928 - - - - - - 0.928 - - zgc:113425 [Source:ZFIN;Acc:ZDB-GENE-050320-128]
11. RNH1_2 RNH1_2 12 0.926 - - - - - 0.926 - - -
12. TTC37 ENSDARG00000074314 356 0.912 - 0.912 - - - - - - - tetratricopeptide repeat domain 37 [Source:ZFIN;Acc:ZDB-GENE-110125-2]
13. SIMC1 SIMC1 103 0.911 - - - - - 0.911 - - -
14. slc7a2 ENSDARG00000037097, ENSDARG00000109424 122 0.905 - - - - - 0.905 - - - solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 [Source:ZFIN;Acc:ZDB-GENE-041212-5]
15. CABZ01078431.1 CABZ01078431.1 183 0.897 - 0.897 - - - - - - -
16. dcaf12 ENSDARG00000063155 697 0.89 - 0.890 - - - - - - - DDB1 and CUL4 associated factor 12 [Source:ZFIN;Acc:ZDB-GENE-061013-363]
17. ELMO2 ENSDARG00000063527 301 0.886 - - - - - - 0.886 - - engulfment and cell motility 2 [Source:ZFIN;Acc:ZDB-GENE-140106-84]
18. si:dkey-102c8.1 si:dkey-102c8.1 85 0.883 - 0.883 - - - - - - -
19. TMEM218 ENSDARG00000027129 716 0.881 - 0.881 - - - - - - - transmembrane protein 218 [Source:ZFIN;Acc:ZDB-GENE-040426-1232]
20. rbmx2 ENSDARG00000044380, ENSDARG00000115698 2528 0.878 - - - - - 0.878 - - - RNA binding motif protein X-linked 2 [Source:ZFIN;Acc:ZDB-GENE-050626-88]
21. rhot1b ENSDARG00000103313, ENSDARG00000109702, ENSDARG00000114871 44 0.876 - 0.876 - - - - - - - ras homolog family member T1 [Source:ZFIN;Acc:ZDB-GENE-061009-52]
22. NEFH NEFH 101 0.876 - 0.876 - - - - - - -
23. dvl1b ENSDARG00000055552 146 0.873 - 0.873 - - - - - - - dishevelled segment polarity protein 1b [Source:ZFIN;Acc:ZDB-GENE-071004-1]
24. TDRD15 TDRD15 46 0.873 - 0.873 - - - - - - -
25. CR759791.1 ENSDARG00000088591 160 0.872 - - - - - 0.872 - - - beta-1,3-galactosyltransferase 2-like [Source:NCBI gene;Acc:100537407]
26. slc16a6a ENSDARG00000102793 60 0.871 - - - - - 0.871 - - - solute carrier family 16, member 6a [Source:ZFIN;Acc:ZDB-GENE-110208-1]
27. dpp6b ENSDARG00000024744 234 0.865 - 0.865 - - - - - - - dipeptidyl-peptidase 6b [Source:ZFIN;Acc:ZDB-GENE-070705-88]
28. myo18ab ENSDARG00000061862 124 0.865 - 0.865 - - - - - - - myosin XVIIIAb [Source:ZFIN;Acc:ZDB-GENE-080423-1]
29. trip4 ENSDARG00000098074 79 0.861 - 0.861 - - - - - - - thyroid hormone receptor interactor 4 [Source:ZFIN;Acc:ZDB-GENE-040724-92]
30. MICU3 MICU3 231 0.861 - 0.861 - - - - - - -
31. zgc:77938 ENSDARG00000088366 74 0.861 - 0.861 - - - - - - - zgc:77938 [Source:ZFIN;Acc:ZDB-GENE-040426-1910]
32. CABZ01020188.1 CABZ01020188.1 61 0.861 - 0.861 - - - - - - -
33. LRFN5_1 LRFN5_1 96 0.861 - 0.861 - - - - - - -
34. rbp1b rbp1b 36 0.861 - 0.861 - - - - - - -
35. odf3b ENSDARG00000114397, ENSDARG00000116899 21 0.861 - 0.861 - - - - - - - outer dense fiber of sperm tails 3B [Source:ZFIN;Acc:ZDB-GENE-030131-7464]
36. edn1 ENSDARG00000036912 74 0.861 - 0.861 - - - - - - - endothelin 1 [Source:ZFIN;Acc:ZDB-GENE-000920-1]
37. nhlrc2 ENSDARG00000089581, ENSDARG00000113639 40 0.861 - 0.861 - - - - - - - NHL repeat containing 2 [Source:ZFIN;Acc:ZDB-GENE-100318-2]
38. slx4 ENSDARG00000061414, ENSDARG00000093798 44 0.861 - 0.861 - - - - - - - SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050208-359]
39. zgc:174654 zgc:174654 54 0.861 - 0.861 - - - - - - -
40. syt5b ENSDARG00000011640 70 0.861 - 0.861 - - - - - - - synaptotagmin Vb [Source:ZFIN;Acc:ZDB-GENE-050522-134]
41. extl2 ENSDARG00000063191 118 0.861 - 0.861 - - - - - - - exostosin-like glycosyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-060929-1122]
42. zmiz1b ENSDARG00000102279 26 0.861 - 0.861 - - - - - - - zinc finger, MIZ-type containing 1b [Source:ZFIN;Acc:ZDB-GENE-120206-3]
43. si:ch211-283l16.1 ENSDARG00000112586 131 0.861 - 0.861 - - - - - - - si:ch211-283l16.1 [Source:ZFIN;Acc:ZDB-GENE-110913-44]
44. Metazoa_SRP_6 Metazoa_SRP_6 7 0.861 - 0.861 - - - - - - -
45. FAM200A FAM200A 19 0.861 - 0.861 - - - - - - -
46. ndst2b ENSDARG00000060678 453 0.861 - 0.861 - - - - - - - N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2b [Source:ZFIN;Acc:ZDB-GENE-100430-2]
47. GSG1 GSG1 10 0.86 - 0.860 - - - - - - -
48. PLD1 PLD1 158 0.857 - - - - - 0.857 - - -
49. CSMD3 CSMD3 0 0.855 - - - - - 0.855 - - -
50. adck5 ENSDARG00000075405 270 0.851 - 0.851 - - - - - - - aarF domain containing kinase 5 [Source:ZFIN;Acc:ZDB-GENE-081104-149]
51. FP017294.1 FP017294.1 77 0.85 - 0.850 - - - - - - -
52. FP017169.3 FP017169.3 216 0.85 - 0.850 - - - - - - -
53. socs3a ENSDARG00000025428 349 0.85 0.850 - - - - - - - - suppressor of cytokine signaling 3a [Source:ZFIN;Acc:ZDB-GENE-030131-7349]
54. nphp3 ENSDARG00000078261 110 0.846 - 0.846 - - - - - - - nephronophthisis 3 [Source:ZFIN;Acc:ZDB-GENE-091204-117]
55. ddrgk1_1 ENSDARG00000037172 1563 0.843 - - - - - 0.843 - - - DDRGK domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1050]
56. CABZ01045617.2 CABZ01045617.2 13 0.843 - 0.843 - - - - - - -
57. gpr63 ENSDARG00000074540 242 0.841 - 0.841 - - - - - - - G protein-coupled receptor 63 [Source:ZFIN;Acc:ZDB-GENE-110411-183]
58. si:dkey-149i7.2 si:dkey-149i7.2 176 0.84 - - - - - 0.840 - - -
59. si:ch211-212o2.6 si:ch211-212o2.6 61 0.836 - 0.836 - - - - - - -
60. swt1 ENSDARG00000094010 472 0.833 - - - - - 0.833 - - - SWT1 RNA endoribonuclease homolog [Source:ZFIN;Acc:ZDB-GENE-041015-373]
61. pfkfb1 ENSDARG00000037140 182 0.831 - - - - - 0.831 - - - 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5664]
62. RNF222 24 0.83 0.830 - - - - - - - - ring finger protein 222
63. zgc:110366 ENSDARG00000004167 314 0.829 - 0.829 - - - - - - - zgc:110366 [Source:ZFIN;Acc:ZDB-GENE-050417-302]
64. fam212aa 1132 0.829 - 0.829 - - - - - - - family with sequence similarity 212, member Aa, transcript variant X1
65. phc2b_1 ENSDARG00000013224 1316 0.829 - 0.829 - - - - - - - polyhomeotic homolog 2b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-1113]
66. si:ch73-369o7.3 si:ch73-369o7.3 20 0.829 - 0.829 - - - - - - -
67. FAM65C 127 0.829 - 0.829 - - - - - - - family with sequence similarity 65, member C, transcript variant X2
68. gpr158 gpr158 52 0.828 - 0.828 - - - - - - -
69. zgc:113372 ENSDARG00000053263 178 0.828 - 0.828 - - - - - - - zgc:113372 [Source:ZFIN;Acc:ZDB-GENE-050913-150]
70. eif4ebp3 ENSDARG00000054916 583 0.828 0.828 - - - - - - - - eukaryotic translation initiation factor 4E binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-041114-44]
71. itprip ENSDARG00000015576 62 0.828 - 0.828 - - - - - - - inositol 1,4,5-trisphosphate receptor interacting protein [Source:ZFIN;Acc:ZDB-GENE-050417-422]
72. ENDOD1_7 ENDOD1_7 33 0.826 - 0.826 - - - - - - -
73. TIMM21 ENSDARG00000071594 722 0.826 - - - - - - 0.826 - - translocase of inner mitochondrial membrane 21 [Source:HGNC Symbol;Acc:HGNC:25010]
74. acacb ENSDARG00000061994 1886 0.824 - - - - - 0.824 - - - acetyl-CoA carboxylase beta [Source:ZFIN;Acc:ZDB-GENE-060526-132]
75. zgc:113060 zgc:113060 63 0.823 - 0.823 - - - - - - -
76. FIBCD1 ENSDARG00000074640 56 0.822 - 0.822 - - - - - - - fibrinogen C domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25922]
77. noc3l ENSDARG00000002487 230 0.822 - 0.822 - - - - - - - NOC3-like DNA replication regulator [Source:ZFIN;Acc:ZDB-GENE-030131-9878]
78. BX465841.1 BX465841.1 47 0.822 - 0.822 - - - - - - -
79. qrsl1 ENSDARG00000032704 200 0.82 - - - - - 0.820 - - - glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5540]
80. GIGYF1_2 GIGYF1_2 22 0.82 - 0.820 - - - - - - -
81. zbtb12.2 ENSDARG00000070658 55 0.819 - 0.819 - - - - - - - zinc finger and BTB domain containing 12, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060503-27]
82. ap4m1 ENSDARG00000056871 160 0.817 - 0.817 - - - - - - - adaptor related protein complex 4 subunit mu 1 [Source:ZFIN;Acc:ZDB-GENE-040718-421]
83. timm50 ENSDARG00000031098, ENSDARG00000109900 988 0.817 0.817 - - - - - - - - translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040426-1618]
84. zgc:113279 ENSDARG00000099533 156 0.816 - 0.816 - - - - - - - zgc:113279 [Source:ZFIN;Acc:ZDB-GENE-050522-529]
85. MYADML2 ENSDARG00000053953 810 0.815 - - - - - - 0.815 - - myeloid-associated differentiation marker-like 2 [Source:ZFIN;Acc:ZDB-GENE-120807-3]
86. si:dkey-261e22.5 si:dkey-261e22.5 68 0.815 - 0.815 - - - - - - -
87. CU571081.1 ENSDARG00000113329 171 0.815 - - - - - 0.815 - - - C3a anaphylatoxin chemotactic receptor-like [Source:NCBI gene;Acc:101885604]
88. scarb1 ENSDARG00000101557 503 0.813 - - - - - 0.813 - - - scavenger receptor class B, member 1 [Source:ZFIN;Acc:ZDB-GENE-031126-1]
89. si:ch211-244b2.3 ENSDARG00000069244 19 0.811 - 0.811 - - - - - - - si:ch211-244b2.3 [Source:ZFIN;Acc:ZDB-GENE-030131-4737]
90. ST7 ENSDARG00000039960, ENSDARG00000112691 2020 0.811 - - - - - - 0.811 - - suppression of tumorigenicity 7 [Source:ZFIN;Acc:ZDB-GENE-060421-2807]
91. CHCHD4 CHCHD4 185 0.809 - 0.809 - - - - - - -
92. trmt2b ENSDARG00000033967 127 0.809 - 0.809 - - - - - - - tRNA methyltransferase 2 homolog B [Source:ZFIN;Acc:ZDB-GENE-050809-101]
93. si:ch73-22o12.1 ENSDARG00000062831 251 0.806 - - - - - 0.806 - - - si:ch73-22o12.1 [Source:ZFIN;Acc:ZDB-GENE-110411-27]
94. CU633775.1 ENSDARG00000113543 319 0.806 - - - - - 0.806 - - -
95. pde6d ENSDARG00000074892, ENSDARG00000115562, ENSDARG00000115620 506 0.805 - 0.805 - - - - - - - phosphodiesterase 6D, cGMP-specific, rod, delta [Source:ZFIN;Acc:ZDB-GENE-040718-463]
96. vgll2b ENSDARG00000053773 444 0.804 - - - - - - 0.804 - - vestigial-like family member 2b [Source:ZFIN;Acc:ZDB-GENE-050809-113]
97. cry2b cry2b 517 0.803 - - - - - - 0.803 - -
98. spop ENSDARG00000100519 177 0.802 - - - - - 0.802 - - - speckle-type POZ protein [Source:ZFIN;Acc:ZDB-GENE-040426-1378]
99. BOD1L2 BOD1L2 32 0.801 - 0.801 - - - - - - -
100. itga2.1 ENSDARG00000069390 6 0.801 - 0.801 - - - - - - - integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-111011-4]

There are 536 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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