Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for ddx23

Gene Name Gene ID Reads Annotation
ddx23 ENSDARG00000021945, ENSDARG00000116153 2265 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Source:ZFIN;Acc:ZDB-GENE-030131-6215]










Genes with expression patterns similar to ddx23

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ddx23 ENSDARG00000021945, ENSDARG00000116153 2265 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Source:ZFIN;Acc:ZDB-GENE-030131-6215]
2. syncripl ENSDARG00000026723 3889 2.567 - 0.870 - 0.848 - - - - 0.849 synaptotagmin binding, cytoplasmic RNA interacting protein, like [Source:ZFIN;Acc:ZDB-GENE-030131-3104]
3. txnl4a ENSDARG00000036190 2048 2.482 - - - - - - 0.815 0.797 0.870 thioredoxin-like 4A [Source:ZFIN;Acc:ZDB-GENE-041010-25]
4. prpf4bb ENSDARG00000040310 2260 2.459 - 0.721 - - - - - 0.889 0.849 pre-mRNA processing factor 4Bb [Source:ZFIN;Acc:ZDB-GENE-040426-2799]
5. gid8b ENSDARG00000037589 2121 2.391 - 0.718 - - - 0.869 - - 0.804 GID complex subunit 8 homolog b (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030515-4]
6. ctbp1 ENSDARG00000057007, ENSDARG00000115804 5795 2.207 - - 0.705 - - - 0.716 - 0.786 C-terminal binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-010130-1]
7. dbnlb ENSDARG00000016016 1412 1.871 - - - - - 0.895 - 0.976 - drebrin-like b [Source:ZFIN;Acc:ZDB-GENE-050522-293]
8. gnl3l ENSDARG00000020595, ENSDARG00000109309 3582 1.821 - - - - - 0.904 - 0.917 - guanine nucleotide binding protein-like 3 (nucleolar)-like [Source:ZFIN;Acc:ZDB-GENE-040723-1]
9. snrpd3 ENSDARG00000013800, ENSDARG00000112203 3334 1.785 - - - - - 0.905 - - 0.880 small nuclear ribonucleoprotein D3 polypeptide [Source:ZFIN;Acc:ZDB-GENE-040625-55]
10. irx5a ENSDARG00000034043 1694 1.779 - - - - - - - 0.904 0.875 iroquois homeobox 5a [Source:ZFIN;Acc:ZDB-GENE-010716-2]
11. phf10 ENSDARG00000070084 1210 1.776 - - - - - - - 0.922 0.854 PHD finger protein 10 [Source:ZFIN;Acc:ZDB-GENE-040426-1573]
12. vps36 ENSDARG00000057021 636 1.773 - - - - - 0.846 - 0.927 - vacuolar protein sorting 36 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-7753]
13. tmx1 ENSDARG00000019487 1129 1.758 - 0.835 - - - - - 0.923 - thioredoxin-related transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2327]
14. krt1-19d ENSDARG00000023082 902 1.752 - - - - - 0.829 - 0.923 - keratin, type 1, gene 19d [Source:ZFIN;Acc:ZDB-GENE-060316-1]
15. psmb6 ENSDARG00000002240 8015 1.751 - - - - - 0.888 - 0.863 - proteasome subunit beta 6 [Source:ZFIN;Acc:ZDB-GENE-990415-216]
16. cks2 ENSDARG00000071410, ENSDARG00000116198 966 1.743 - - - - - - - 0.931 0.812 CDC28 protein kinase regulatory subunit 2 [Source:ZFIN;Acc:ZDB-GENE-050208-508]
17. clk4b ENSDARG00000005908 915 1.743 - - - - - 0.850 - 0.893 - CDC-like kinase 4b [Source:ZFIN;Acc:ZDB-GENE-050227-19]
18. PROSER1 ENSDARG00000086302 1935 1.736 - - - - - - - 0.935 0.801 proline and serine rich 1 [Source:ZFIN;Acc:ZDB-GENE-111003-1]
19. ik ENSDARG00000004161 3132 1.733 - - - - - 0.898 - - 0.835 IK cytokine [Source:ZFIN;Acc:ZDB-GENE-030131-960]
20. rbm34 ENSDARG00000101877 1573 1.728 - - - - - 0.900 - - 0.828 RNA binding motif protein 34 [Source:ZFIN;Acc:ZDB-GENE-040718-77]
21. sumo3b ENSDARG00000035993 3414 1.727 - - - - - - - 0.801 0.926 small ubiquitin-like modifier 3b [Source:ZFIN;Acc:ZDB-GENE-040718-426]
22. bbip1 ENSDARG00000071046, ENSDARG00000112897, ENSDARG00000116522 1062 1.726 - - - - - - - 0.881 0.845 BBSome interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-050208-445]
23. abhd17c ENSDARG00000058452, ENSDARG00000111161 1698 1.722 - - - - - 0.879 - - 0.843 abhydrolase domain containing 17C [Source:ZFIN;Acc:ZDB-GENE-040426-714]
24. palm1b ENSDARG00000007818 2128 1.715 - - - - - - - 0.921 0.794 paralemmin 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1147]
25. UBL4A UBL4A 1115 1.712 - - - - - - - 0.891 0.821
26. cdc34b ENSDARG00000012627 3879 1.712 - - - - - 0.863 - - 0.849 cell division cycle 34 homolog (S. cerevisiae) b [Source:ZFIN;Acc:ZDB-GENE-040718-439]
27. RSF1_2 RSF1_2 1343 1.711 - - - 0.858 - - - 0.853 -
28. rwdd ENSDARG00000068256 964 1.707 - - - - - 0.894 - - 0.813 RWD domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041010-61]
29. dhrs13a.2 ENSDARG00000111240 491 1.705 - - - - - 0.882 - - 0.823 dehydrogenase/reductase (SDR family) member 13a, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-040912-69]
30. fbxo11a ENSDARG00000061631, ENSDARG00000102294, ENSDARG00000112746 1129 1.704 - - - 0.775 - - - 0.929 - F-box protein 11a [Source:ZFIN;Acc:ZDB-GENE-061103-70]
31. ngly1 ENSDARG00000003205 733 1.702 - - - - - 0.884 - - 0.818 N-glycanase 1 [Source:ZFIN;Acc:ZDB-GENE-050522-535]
32. hnrnpd ENSDARG00000059246, ENSDARG00000109297, ENSDARG00000113453 3440 1.7 - - - - - 0.881 - - 0.819 heterogeneous nuclear ribonucleoprotein D [Source:ZFIN;Acc:ZDB-GENE-070424-97]
33. apopt1 ENSDARG00000092473 682 1.699 - - - - - - - 0.883 0.816 apoptogenic 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-090313-66]
34. srek1ip1 ENSDARG00000043728 985 1.698 - - - - - 0.883 - - 0.815 SREK1-interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-051030-24]
35. gtf2e2 ENSDARG00000012672, ENSDARG00000109689, ENSDARG00000115211 1677 1.69 - - - - - 0.878 0.812 - - general transcription factor IIE, polypeptide 2, beta [Source:ZFIN;Acc:ZDB-GENE-030131-6794]
36. SCML2 ENSDARG00000012949 1310 1.684 - - - - - - 0.730 0.954 - Scm polycomb group protein like 2 [Source:ZFIN;Acc:ZDB-GENE-130530-546]
37. ptrhd1 ENSDARG00000016122 2705 1.682 - - - - - 0.781 - 0.901 - peptidyl-tRNA hydrolase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-081110-2]
38. TRIP10 TRIP10 1079 1.681 - - - - - 0.868 - - 0.813
39. supt16h ENSDARG00000079949 4755 1.678 - - - - - - 0.785 - 0.893 SPT16 homolog, facilitates chromatin remodeling subunit [Source:ZFIN;Acc:ZDB-GENE-031118-96]
40. nod2 ENSDARG00000010756 294 1.676 - - - - - 0.862 - - 0.814 nucleotide-binding oligomerization domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-061108-4]
41. pex13 ENSDARG00000071037 738 1.666 - - - - - 0.863 - - 0.803 peroxisomal biogenesis factor 13 [Source:ZFIN;Acc:ZDB-GENE-040426-1544]
42. tpst1 ENSDARG00000073872 2490 1.662 - - - - - - - 0.838 0.824 tyrosylprotein sulfotransferase 1 [Source:ZFIN;Acc:ZDB-GENE-000210-10]
43. ppp1r12a ENSDARG00000010784 4333 1.66 - - - - - 0.883 - - 0.777 protein phosphatase 1, regulatory subunit 12A [Source:ZFIN;Acc:ZDB-GENE-041011-3]
44. gpr143 ENSDARG00000034572 559 1.656 - - - - - 0.853 - - 0.803 G protein-coupled receptor 143 [Source:ZFIN;Acc:ZDB-GENE-040426-1476]
45. u2af2b ENSDARG00000011740 6946 1.652 - - - - - - 0.778 - 0.874 U2 small nuclear RNA auxiliary factor 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1881]
46. dnm1l ENSDARG00000015006 1729 1.65 - 0.769 - - - - - 0.881 - dynamin 1-like [Source:ZFIN;Acc:ZDB-GENE-040426-1556]
47. rnf121 ENSDARG00000060282 1809 1.646 - 0.819 - - - - - - 0.827 ring finger protein 121 [Source:ZFIN;Acc:ZDB-GENE-050809-3]
48. mrpl3 ENSDARG00000103318 2308 1.645 - - - - - 0.849 - - 0.796 mitochondrial ribosomal protein L3 [Source:ZFIN;Acc:ZDB-GENE-030131-8227]
49. pank1b ENSDARG00000010098 3202 1.645 - - - - - - 0.788 0.857 - pantothenate kinase 1b [Source:ZFIN;Acc:ZDB-GENE-070209-259]
50. sult4a1 ENSDARG00000101967 205 1.643 - - - - - - 0.711 0.932 - sulfotransferase family 4A, member 1 [Source:ZFIN;Acc:ZDB-GENE-060421-2705]
51. fam76b ENSDARG00000012432 2722 1.64 - - - - - - 0.741 0.899 - family with sequence similarity 76, member B [Source:ZFIN;Acc:ZDB-GENE-030131-6955]
52. oafa ENSDARG00000075851 2015 1.636 - 0.781 - - - 0.855 - - - OAF homolog a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-090917-1]
53. hoxa3a ENSDARG00000103862 2239 1.636 - - - - - - 0.756 0.880 - homeobox A3a [Source:ZFIN;Acc:ZDB-GENE-000823-3]
54. siah1 ENSDARG00000030871 1590 1.634 - - - - - 0.739 - 0.895 - siah E3 ubiquitin protein ligase 1 [Source:ZFIN;Acc:ZDB-GENE-010319-31]
55. ndufs4 ENSDARG00000052840, ENSDARG00000110036 3441 1.633 - 0.798 - - - - - 0.835 - NADH:ubiquinone oxidoreductase subunit S4 [Source:ZFIN;Acc:ZDB-GENE-050522-421]
56. bcas2 ENSDARG00000043631 1971 1.627 - - - - - 0.825 0.802 - - BCAS2, pre-mRNA processing factor [Source:ZFIN;Acc:ZDB-GENE-030408-5]
57. phc2a ENSDARG00000056695, ENSDARG00000110253 1726 1.624 - - - 0.727 - - - - 0.897 polyhomeotic homolog 2a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-020312-1]
58. tmem59l ENSDARG00000003655 1536 1.623 - - - - - - 0.755 - 0.868 transmembrane protein 59-like [Source:ZFIN;Acc:ZDB-GENE-040426-2651]
59. pvrl1b 1645 1.616 - - - - - 0.854 - - 0.762 poliovirus receptor-related 1b
60. smx5 ENSDARG00000070867, ENSDARG00000111500, ENSDARG00000113078, ENSDARG00000113975 3132 1.614 - 0.807 - - - - - 0.807 - smx5 [Source:ZFIN;Acc:ZDB-GENE-000616-10]
61. pik3r2 ENSDARG00000018060, ENSDARG00000112255 3899 1.614 0.810 - - - - 0.804 - - - phosphoinositide-3-kinase, regulatory subunit 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-040309-1]
62. taz ENSDARG00000041421 985 1.613 - - - - - 0.770 - - 0.843 tafazzin [Source:ZFIN;Acc:ZDB-GENE-030131-684]
63. cdc20 ENSDARG00000100741 3264 1.611 - 0.721 - - - 0.890 - - - cell division cycle 20 homolog [Source:ZFIN;Acc:ZDB-GENE-040426-2044]
64. kifc1 ENSDARG00000001558 6658 1.611 - - - - - - 0.725 - 0.886 kinesin family member C1 [Source:ZFIN;Acc:ZDB-GENE-000208-21]
65. ap2b1 ENSDARG00000035152 2912 1.609 - - - 0.718 - - - 0.891 - adaptor related protein complex 2 subunit beta 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6564]
66. snrnp200 ENSDARG00000077536, ENSDARG00000114486 4981 1.599 - - - - - 0.877 0.722 - - small nuclear ribonucleoprotein 200 (U5) [Source:ZFIN;Acc:ZDB-GENE-081105-64]
67. ythdc1 ENSDARG00000051953, ENSDARG00000114892 4752 1.598 - - - - - - - 0.850 0.748 YTH domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041114-114]
68. samm50l ENSDARG00000039681 2465 1.597 - - - - - 0.782 - - 0.815 sorting and assembly machinery component 50 homolog, like [Source:ZFIN;Acc:ZDB-GENE-041114-30]
69. prpf4ba ENSDARG00000008784 936 1.597 - - - - - - 0.736 - 0.861 pre-mRNA processing factor 4Ba [Source:ZFIN;Acc:ZDB-GENE-040426-947]
70. JHDM1D JHDM1D 2277 1.596 - - - - - - - 0.817 0.779
71. dcaf13 ENSDARG00000002267 2435 1.595 - - - - - - - 0.765 0.830 ddb1 and cul4 associated factor 13 [Source:ZFIN;Acc:ZDB-GENE-040426-703]
72. cyth1a ENSDARG00000005159, ENSDARG00000076742 2796 1.595 - 0.823 - - - 0.772 - - - cytohesin 1a [Source:ZFIN;Acc:ZDB-GENE-030131-657]
73. her15.2 her15.2 1701 1.594 - - - - - - - 0.789 0.805
74. supt5h ENSDARG00000042724, ENSDARG00000111598 6419 1.593 - 0.774 - - - - - - 0.819 SPT5 homolog, DSIF elongation factor subunit [Source:ZFIN;Acc:ZDB-GENE-001207-1]
75. CU571336.2 CU571336.2 2690 1.589 - 0.881 0.708 - - - - - -
76. tom1 ENSDARG00000104581 1457 1.584 - - - - - 0.810 - - 0.774 target of myb1 membrane trafficking protein [Source:ZFIN;Acc:ZDB-GENE-060721-1]
77. ppp1r14ab ENSDARG00000017710, ENSDARG00000110779 3296 1.58 - - - - - - 0.827 - 0.753 protein phosphatase 1, regulatory (inhibitor) subunit 14Ab [Source:ZFIN;Acc:ZDB-GENE-040426-1783]
78. nup155 ENSDARG00000001777 3417 1.577 - - - - - - 0.704 0.873 - nucleoporin 155 [Source:ZFIN;Acc:ZDB-GENE-040426-711]
79. cnot3a ENSDARG00000007135 3084 1.577 - - - 0.719 - - - - 0.858 CCR4-NOT transcription complex, subunit 3a [Source:ZFIN;Acc:ZDB-GENE-040927-6]
80. vta1 ENSDARG00000013732 6072 1.576 - - - - - 0.824 - 0.752 - vesicle (multivesicular body) trafficking 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2154]
81. TNRC6C_2 TNRC6C_2 2444 1.576 - - - - - - 0.729 0.847 -
82. eif4e2rs1 ENSDARG00000015835 589 1.575 - - - - - 0.836 0.739 - - eukaryotic translation initiation factor 4E family member 2 related sequence 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1728]
83. PHB2 PHB2 3755 1.567 - - - - - - - 0.861 0.706
84. cse1l ENSDARG00000006963 3261 1.563 - - - - 0.713 - - 0.850 - CSE1 chromosome segregation 1-like (yeast) [Source:ZFIN;Acc:ZDB-GENE-990603-1]
85. setd8b 2528 1.561 - 0.729 - - - 0.832 - - - SET domain containing (lysine methyltransferase) 8b
86. zdhhc17 ENSDARG00000070441 1073 1.561 - - - - - - 0.704 - 0.857 zinc finger, DHHC-type containing 17 [Source:ZFIN;Acc:ZDB-GENE-070424-194]
87. kif18a ENSDARG00000008022 546 1.559 - - - 0.724 - - - - 0.835 kinesin family member 18A [Source:ZFIN;Acc:ZDB-GENE-040426-862]
88. C21H18orf25 C21H18orf25 800 1.558 - - - 0.720 - - - - 0.838
89. tcf7l1a ENSDARG00000038159 2288 1.557 - - - 0.834 - - 0.723 - - transcription factor 7 like 1a [Source:ZFIN;Acc:ZDB-GENE-980605-30]
90. ranbp9 ENSDARG00000061048 2687 1.55 - - - - - - 0.744 - 0.806 RAN binding protein 9 [Source:ZFIN;Acc:ZDB-GENE-021030-5]
91. ATP6AP1L_1 ATP6AP1L_1 508 1.55 - - - 0.710 - - - - 0.840
92. kcnj13 ENSDARG00000043443 700 1.547 - 0.742 - - - 0.805 - - - potassium inwardly-rectifying channel, subfamily J, member 13 [Source:ZFIN;Acc:ZDB-GENE-070129-1]
93. nrm ENSDARG00000063690 1371 1.547 - - - - - 0.812 - - 0.735 nurim [Source:ZFIN;Acc:ZDB-GENE-060503-445]
94. rab5c ENSDARG00000026712 4733 1.542 - - - - - 0.707 - 0.835 - RAB5C, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-031118-30]
95. KDM6B KDM6B 10265 1.542 - - - - - - 0.720 - 0.822
96. ngdn ENSDARG00000045372 782 1.542 - - 0.702 - - - - 0.840 - neuroguidin, EIF4E binding protein [Source:ZFIN;Acc:ZDB-GENE-031030-13]
97. spred2a ENSDARG00000052435 1624 1.539 - 0.704 - - - - - - 0.835 sprouty-related, EVH1 domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-110830-2]
98. itgb4 ENSDARG00000028507 2568 1.536 - 0.714 - - - 0.822 - - - integrin, beta 4 [Source:ZFIN;Acc:ZDB-GENE-030131-7209]
99. hmgb1b ENSDARG00000030479 10398 1.533 - 0.811 - - - - 0.722 - - high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]
100. dohh ENSDARG00000003564, ENSDARG00000116423 1117 1.533 - 0.719 - - - - - - 0.814 deoxyhypusine hydroxylase/monooxygenase [Source:ZFIN;Acc:ZDB-GENE-030131-451]

There are 1707 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA