Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for ctcf

Gene Name Gene ID Reads Annotation
ctcf ENSDARG00000056621, ENSDARG00000113285 1750 CCCTC-binding factor (zinc finger protein) [Source:ZFIN;Acc:ZDB-GENE-040624-5]










Genes with expression patterns similar to ctcf

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ctcf ENSDARG00000056621, ENSDARG00000113285 1750 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 CCCTC-binding factor (zinc finger protein) [Source:ZFIN;Acc:ZDB-GENE-040624-5]
2. LDLRAD4 LDLRAD4 1237 2.631 - - - 0.853 - - - 0.975 0.803
3. mfap1 ENSDARG00000018241 833 2.479 - 0.790 - 0.759 - - - 0.930 - microfibril associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1075]
4. ssrp1a ENSDARG00000037397, ENSDARG00000116441 3999 2.452 - - - 0.785 - - - 0.900 0.767 structure specific recognition protein 1a [Source:ZFIN;Acc:ZDB-GENE-031118-9]
5. fzd3a ENSDARG00000021664 1958 2.42 - - - 0.774 - - - 0.914 0.732 frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
6. max ENSDARG00000024844 6035 2.379 - - - 0.826 - - - 0.832 0.721 myc associated factor X [Source:ZFIN;Acc:ZDB-GENE-990415-152]
7. eef1a1a ENSDARG00000039502 234 1.86 - - - 0.879 - - - 0.981 - eukaryotic translation elongation factor 1 alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-8278]
8. irf2a ENSDARG00000007387 915 1.85 - - - 0.868 - - - 0.982 - interferon regulatory factor 2a [Source:ZFIN;Acc:ZDB-GENE-030131-4135]
9. gipc1 ENSDARG00000104483 2913 1.839 - - - 0.876 - - - 0.963 - GIPC PDZ domain containing family, member 1 [Source:ZFIN;Acc:ZDB-GENE-060726-1]
10. FBXL3 FBXL3 1769 1.838 - - - 0.882 - - - 0.956 -
11. tdp2b ENSDARG00000035954, ENSDARG00000109349 478 1.834 - - - 0.853 - - - 0.981 - tyrosyl-DNA phosphodiesterase 2b [Source:ZFIN;Acc:ZDB-GENE-050816-1]
12. ube2z ENSDARG00000029215 1059 1.818 - - - 0.871 - - - 0.947 - ubiquitin-conjugating enzyme E2Z [Source:ZFIN;Acc:ZDB-GENE-040718-15]
13. klc2 3058 1.769 - - - 0.820 - - - 0.949 - kinesin light chain 2
14. si:ch211-113e8.11 ENSDARG00000076585 721 1.765 - - - 0.791 - - - 0.974 - si:ch211-113e8.11 [Source:ZFIN;Acc:ZDB-GENE-090313-12]
15. lmo3 ENSDARG00000008720, ENSDARG00000114518 4773 1.764 - - - 0.801 - - - 0.963 - LIM domain only 3 [Source:ZFIN;Acc:ZDB-GENE-050522-201]
16. C2H6orf52 C2H6orf52 2847 1.76 - - - - - 0.830 - 0.930 -
17. AP3B2 1874 1.751 - - - - - - - 0.960 0.791 adaptor related protein complex 3 beta 2 subunit, transcript variant X2
18. prkag1 ENSDARG00000003818 2800 1.744 - - - 0.766 - - - 0.978 - protein kinase, AMP-activated, gamma 1 non-catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-040426-2188]
19. CCDC50 ENSDARG00000105136 1695 1.741 - - - - - 0.802 - 0.939 - coiled-coil domain containing 50 [Source:ZFIN;Acc:ZDB-GENE-150115-1]
20. zmym4 ENSDARG00000035823 347 1.736 - - - 0.891 - 0.845 - - - zinc finger, MYM-type 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5459]
21. ptpn23a ENSDARG00000070124 1206 1.733 - - - 0.842 - 0.891 - - - protein tyrosine phosphatase, non-receptor type 23, a [Source:ZFIN;Acc:ZDB-GENE-100921-24]
22. CABZ01073424.1 ENSDARG00000107858 688 1.731 - - - 0.753 - - - 0.978 -
23. top2a ENSDARG00000024488 4273 1.725 - - - - - - - 0.954 0.771 DNA topoisomerase II alpha [Source:ZFIN;Acc:ZDB-GENE-030131-2453]
24. vamp2 ENSDARG00000056877 2158 1.719 - - - - - - - 0.960 0.759 vesicle-associated membrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8225]
25. TDG TDG 1191 1.712 - - - 0.742 - - - 0.970 -
26. ccz1 ENSDARG00000056559, ENSDARG00000109877 2629 1.707 - - - - - 0.738 - 0.969 - CCZ1 homolog, vacuolar protein trafficking and biogenesis associated [Source:ZFIN;Acc:ZDB-GENE-040426-698]
27. maf1 ENSDARG00000013122 3365 1.706 - - - 0.823 - - - 0.883 - MAF1 homolog, negative regulator of RNA polymerase III [Source:ZFIN;Acc:ZDB-GENE-040426-2788]
28. Sep-06 Sep-06 5465 1.704 - - - - - - - 0.959 0.745
29. nlk1 ENSDARG00000006566 1123 1.695 - 0.739 - - - - - 0.956 - nemo-like kinase, type 1 [Source:ZFIN;Acc:ZDB-GENE-040701-1]
30. arl4aa ENSDARG00000099918 1391 1.693 - - - - - 0.726 - 0.967 - ADP-ribosylation factor-like 4aa [Source:ZFIN;Acc:ZDB-GENE-040426-1878]
31. suco ENSDARG00000016532 1609 1.692 - - - 0.718 - - - 0.974 - SUN domain containing ossification factor [Source:ZFIN;Acc:ZDB-GENE-030131-2941]
32. GATAD2B ENSDARG00000005834 3855 1.69 - - - - - - - 0.929 0.761 GATA zinc finger domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-060503-655]
33. atrx ENSDARG00000042236, ENSDARG00000112921, ENSDARG00000116878 7922 1.69 - - - - - 0.792 - 0.898 - alpha thalassemia/mental retardation syndrome X-linked homolog (human) [Source:ZFIN;Acc:ZDB-GENE-030912-11]
34. prps1b ENSDARG00000037506, ENSDARG00000110507 4170 1.688 - - - - - - - 0.938 0.750 phosphoribosyl pyrophosphate synthetase 1B [Source:ZFIN;Acc:ZDB-GENE-030131-4011]
35. rexo1 ENSDARG00000026986 770 1.684 - - - 0.896 - - - - 0.788 REX1, RNA exonuclease 1 homolog [Source:ZFIN;Acc:ZDB-GENE-030131-1650]
36. foxp1b ENSDARG00000014181 2594 1.675 - - - 0.733 - - - 0.942 - forkhead box P1b [Source:ZFIN;Acc:ZDB-GENE-041203-1]
37. nadl1.1 1200 1.673 - - - - - - - 0.961 0.712 neural adhesion molecule L1.1, transcript variant X1
38. marcksa ENSDARG00000004049 2518 1.665 - - - 0.895 - - - - 0.770 myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
39. myef2 ENSDARG00000059398 6050 1.663 - - - - - - - 0.898 0.765 myelin expression factor 2 [Source:ZFIN;Acc:ZDB-GENE-051120-114]
40. CREM CREM 1333 1.661 - 0.814 - 0.847 - - - - -
41. gpm6bb ENSDARG00000001676 2005 1.659 - - - 0.900 - - - - 0.759 glycoprotein M6Bb [Source:ZFIN;Acc:ZDB-GENE-030710-10]
42. creb3l3l ENSDARG00000020926, ENSDARG00000116217 1458 1.649 - 0.739 - - - - - 0.910 - cAMP responsive element binding protein 3-like 3 like [Source:ZFIN;Acc:ZDB-GENE-040426-2942]
43. fmnl2b ENSDARG00000075041 1744 1.648 - - - 0.863 - - - - 0.785 formin-like 2b [Source:ZFIN;Acc:ZDB-GENE-041111-182]
44. thrap3b ENSDARG00000098228 4396 1.641 - - - - - - - 0.940 0.701 thyroid hormone receptor associated protein 3b [Source:ZFIN;Acc:ZDB-GENE-040516-9]
45. ccdc173 ENSDARG00000077928 260 1.64 - - - 0.861 - 0.779 - - - coiled-coil domain containing 173 [Source:ZFIN;Acc:ZDB-GENE-081104-457]
46. tnfaip3 ENSDARG00000027777 1066 1.639 - - - - - - - 0.929 0.710 tumor necrosis factor, alpha-induced protein 3 [Source:ZFIN;Acc:ZDB-GENE-100212-2]
47. ppp6r3 ENSDARG00000013379 2912 1.638 - - - - - - - 0.935 0.703 protein phosphatase 6, regulatory subunit 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3251]
48. ccnk ENSDARG00000034146 1255 1.637 - - - 0.764 - 0.873 - - - cyclin K [Source:ZFIN;Acc:ZDB-GENE-030131-5126]
49. cmtm6 ENSDARG00000099631 641 1.631 - - - 0.881 - - 0.750 - - CKLF-like MARVEL transmembrane domain containing 6 [Source:ZFIN;Acc:ZDB-GENE-030729-15]
50. her4.2_1 ENSDARG00000056729, ENSDARG00000094426 2383 1.63 - - - - - - - 0.880 0.750 hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
51. mctp2a ENSDARG00000001414 307 1.63 - - - 0.879 - 0.751 - - - multiple C2 domains, transmembrane 2a [Source:ZFIN;Acc:ZDB-GENE-040724-63]
52. AGAP3 ENSDARG00000087822 4128 1.629 - - - 0.801 - 0.828 - - - ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 [Source:ZFIN;Acc:ZDB-GENE-110927-1]
53. INO80B ENSDARG00000062749 844 1.629 - - - 0.852 - 0.777 - - - INO80 complex subunit B [Source:ZFIN;Acc:ZDB-GENE-061013-69]
54. RBM26 ENSDARG00000104130 1012 1.622 - - - 0.856 - - - - 0.766 RNA binding motif protein 26 [Source:ZFIN;Acc:ZDB-GENE-050706-50]
55. cdc34b ENSDARG00000012627 3879 1.621 - 0.750 - - - 0.871 - - - cell division cycle 34 homolog (S. cerevisiae) b [Source:ZFIN;Acc:ZDB-GENE-040718-439]
56. KPNA6 ENSDARG00000044980 543 1.614 - - - 0.876 - 0.738 - - - karyopherin alpha 6 (importin alpha 7) [Source:ZFIN;Acc:ZDB-GENE-130530-626]
57. anapc7 ENSDARG00000063005 1139 1.614 - - - 0.894 - - - - 0.720 anaphase promoting complex subunit 7 [Source:ZFIN;Acc:ZDB-GENE-081104-113]
58. st18 663 1.606 - - - 0.865 - - - - 0.741 suppression of tumorigenicity 18, zinc finger
59. hmgb3a ENSDARG00000056725 15668 1.605 - - - - - - - 0.904 0.701 high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
60. capn8 ENSDARG00000055715, ENSDARG00000111228 497 1.602 - - - - - 0.787 0.815 - - calpain 8 [Source:ZFIN;Acc:ZDB-GENE-050522-279]
61. srrm2 ENSDARG00000037965 1967 1.598 - - - 0.878 - - - - 0.720 serine/arginine repetitive matrix 2 [Source:ZFIN;Acc:ZDB-GENE-050522-399]
62. eif4h ENSDARG00000042252 6742 1.595 - - - 0.789 - - - - 0.806 eukaryotic translation initiation factor 4h [Source:ZFIN;Acc:ZDB-GENE-010328-19]
63. smc2 ENSDARG00000017744, ENSDARG00000114076 2271 1.594 - - - 0.878 - - - - 0.716 structural maintenance of chromosomes 2 [Source:ZFIN;Acc:ZDB-GENE-030131-105]
64. si:ch211-161h7.4 ENSDARG00000087238 4399 1.584 - 0.737 - - - - - 0.847 - si:ch211-161h7.4 [Source:ZFIN;Acc:ZDB-GENE-091118-108]
65. rbmx2 ENSDARG00000044380, ENSDARG00000115698 2528 1.584 - 0.710 - 0.874 - - - - - RNA binding motif protein X-linked 2 [Source:ZFIN;Acc:ZDB-GENE-050626-88]
66. safb ENSDARG00000020467 5608 1.58 - - - - - 0.822 - - 0.758 scaffold attachment factor B [Source:ZFIN;Acc:ZDB-GENE-030131-698]
67. adhfe1 ENSDARG00000053518 499 1.579 - 0.727 - - - 0.852 - - - alcohol dehydrogenase, iron containing, 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2070]
68. efnb1 ENSDARG00000007723, ENSDARG00000116351 1595 1.575 - - - - - 0.846 - - 0.729 ephrin-B1 [Source:ZFIN;Acc:ZDB-GENE-010618-2]
69. cnot8 ENSDARG00000020043 866 1.571 - - - 0.785 - 0.786 - - - CCR4-NOT transcription complex, subunit 8 [Source:ZFIN;Acc:ZDB-GENE-040426-2845]
70. txnl1 ENSDARG00000011921 692 1.565 - - - 0.832 - 0.733 - - - thioredoxin-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-701]
71. dnaja2l ENSDARG00000010745 2367 1.563 - - - - - - - 0.851 0.712 DnaJ (Hsp40) homolog, subfamily A, member 2, like [Source:ZFIN;Acc:ZDB-GENE-030131-2884]
72. dhx9 ENSDARG00000079725 1241 1.561 - - - 0.852 - - - - 0.709 DEAH (Asp-Glu-Ala-His) box helicase 9 [Source:ZFIN;Acc:ZDB-GENE-070912-171]
73. kita ENSDARG00000043317 1091 1.556 - 0.724 - - - - 0.832 - - v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog a [Source:ZFIN;Acc:ZDB-GENE-980526-464]
74. IL17RD ENSDARG00000098359 2309 1.555 - - - - - 0.767 0.788 - - interleukin 17 receptor D [Source:ZFIN;Acc:ZDB-GENE-020320-5]
75. psmg2 ENSDARG00000035987 1938 1.546 - - - 0.773 - 0.773 - - - proteasome (prosome, macropain) assembly chaperone 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1972]
76. setd8b 2528 1.545 - - - - - 0.771 0.774 - - SET domain containing (lysine methyltransferase) 8b
77. pdap1a ENSDARG00000092546, ENSDARG00000116115 7617 1.541 - - - - - 0.774 - - 0.767 pdgfa associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1693]
78. SEC24B ENSDARG00000071906 1018 1.54 - - - 0.763 - 0.777 - - - SEC24 homolog B, COPII coat complex component [Source:ZFIN;Acc:ZDB-GENE-030131-6565]
79. brd1b ENSDARG00000051798 1712 1.539 - - - - - 0.803 - - 0.736 bromodomain containing 1b [Source:ZFIN;Acc:ZDB-GENE-070209-98]
80. casc5 1487 1.537 - - - - - 0.800 - - 0.737 cancer susceptibility candidate 5, transcript variant X3
81. lppr3a lppr3a 1294 1.534 - - - 0.833 - - - - 0.701
82. nus1 ENSDARG00000027813 1417 1.532 - 0.751 - - - 0.781 - - - NUS1, dehydrodolichyl diphosphate synthase subunit [Source:ZFIN;Acc:ZDB-GENE-040718-48]
83. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 1.531 - - - 0.796 - - - - 0.735 POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
84. peli1b ENSDARG00000044083, ENSDARG00000112797 3801 1.522 - - - 0.752 - - - - 0.770 pellino E3 ubiquitin protein ligase 1b [Source:ZFIN;Acc:ZDB-GENE-061027-372]
85. pip5k1aa ENSDARG00000100396 1644 1.52 - - - 0.759 - 0.761 - - - phosphatidylinositol-4-phosphate 5-kinase, type I, alpha, a [Source:ZFIN;Acc:ZDB-GENE-050522-517]
86. znf750 ENSDARG00000102267 327 1.517 - - - - - 0.788 0.729 - - zinc finger protein 750 [Source:ZFIN;Acc:ZDB-GENE-050417-313]
87. actl6a ENSDARG00000070828, ENSDARG00000115348 1961 1.517 - - - - - - 0.795 - 0.722 actin-like 6A [Source:ZFIN;Acc:ZDB-GENE-020419-36]
88. FAM171A2 FAM171A2 707 1.515 - - - - - 0.789 - - 0.726
89. sp4 ENSDARG00000005186 2904 1.512 - - - - - 0.788 - - 0.724 sp4 transcription factor [Source:ZFIN;Acc:ZDB-GENE-031202-3]
90. sgce ENSDARG00000012138 912 1.512 0.732 - - 0.780 - - - - - sarcoglycan, epsilon [Source:ZFIN;Acc:ZDB-GENE-030724-1]
91. rbpjb ENSDARG00000052091 3122 1.511 - - 0.736 - - - - - 0.775 recombination signal binding protein for immunoglobulin kappa J region b [Source:ZFIN;Acc:ZDB-GENE-070319-1]
92. gnpnat1 ENSDARG00000039892 709 1.509 - - - 0.752 - 0.757 - - - glucosamine-phosphate N-acetyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-050522-450]
93. rprd2a ENSDARG00000058089 743 1.509 - - - 0.720 - 0.789 - - - regulation of nuclear pre-mRNA domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-030131-6641]
94. bcl2_1 bcl2_1 1185 1.505 - - - 0.775 - 0.730 - - -
95. mcm6 ENSDARG00000057683, ENSDARG00000113317 6591 1.504 - - - 0.716 - - - - 0.788 minichromosome maintenance complex component 6 [Source:ZFIN;Acc:ZDB-GENE-030909-6]
96. u2af2a ENSDARG00000012505 2920 1.504 - 0.750 - 0.754 - - - - - U2 small nuclear RNA auxiliary factor 2a [Source:ZFIN;Acc:ZDB-GENE-050706-131]
97. sde2 ENSDARG00000024124, ENSDARG00000109881 2342 1.5 - - - 0.798 - - 0.702 - - SDE2 telomere maintenance homolog (S. pombe) [Source:ZFIN;Acc:ZDB-GENE-050417-270]
98. SV2A ENSDARG00000059945 1278 1.499 - - - 0.743 - - - - 0.756 synaptic vesicle glycoprotein 2A [Source:ZFIN;Acc:ZDB-GENE-131001-1]
99. dnajc5aa ENSDARG00000042948 2885 1.497 - - - - - - - 0.792 0.705 DnaJ (Hsp40) homolog, subfamily C, member 5aa [Source:ZFIN;Acc:ZDB-GENE-031113-20]
100. parp1 ENSDARG00000019529 6787 1.495 - - 0.746 - - - - - 0.749 poly (ADP-ribose) polymerase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3955]

There are 1655 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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