Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for cstf1

Gene Name Gene ID Reads Annotation
cstf1 ENSDARG00000044820 1663 cleavage stimulation factor, 3' pre-RNA, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2958]










Genes with expression patterns similar to cstf1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. cstf1 ENSDARG00000044820 1663 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 cleavage stimulation factor, 3' pre-RNA, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2958]
2. nipblb ENSDARG00000061052 6109 2.283 - 0.831 - - - 0.747 0.705 - - nipped-B homolog b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-6070]
3. ube3b ENSDARG00000061960 978 1.851 - - - - - - - 0.916 0.935 ubiquitin protein ligase E3B [Source:ZFIN;Acc:ZDB-GENE-060526-231]
4. arhgap42a ENSDARG00000056619, ENSDARG00000116136 865 1.776 - - - - - - - 0.829 0.947 Rho GTPase activating protein 42a [Source:ZFIN;Acc:ZDB-GENE-030131-8077]
5. CR847925.1 CR847925.1 835 1.761 - - - - - - - 0.824 0.937
6. TMC6 TMC6 773 1.748 - 0.807 - - - - - - 0.941
7. E2F6 E2F6 1271 1.747 - - - - - - - 0.801 0.946
8. lamc3 ENSDARG00000093572 562 1.733 - 0.801 - - - - - - 0.932 laminin, gamma 3 [Source:ZFIN;Acc:ZDB-GENE-060531-121]
9. zgc:136439 ENSDARG00000009267 720 1.731 - - - - - - - 0.795 0.936 zgc:136439 [Source:ZFIN;Acc:ZDB-GENE-060421-2858]
10. narfl ENSDARG00000062216 768 1.729 - - - - - - 0.789 - 0.940 nuclear prelamin A recognition factor-like [Source:ZFIN;Acc:ZDB-GENE-070209-119]
11. nsd1a ENSDARG00000060016 2974 1.721 - - - - - - - 0.882 0.839 nuclear receptor binding SET domain protein 1a [Source:ZFIN;Acc:ZDB-GENE-080519-3]
12. LARS2 ENSDARG00000075337 181 1.712 0.776 - - - - - - - 0.936 leucyl-tRNA synthetase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-070928-3]
13. twistnb ENSDARG00000024416 1077 1.706 - - - - - 0.755 - - 0.951 TWIST neighbor [Source:ZFIN;Acc:ZDB-GENE-041007-3]
14. fam20c fam20c 603 1.698 - - - - - 0.746 - - 0.952
15. snap91 ENSDARG00000098809 844 1.673 - 0.726 - - - - - - 0.947 synaptosomal-associated protein 91 [Source:ZFIN;Acc:ZDB-GENE-100422-6]
16. PVRL4 1691 1.666 - - - - - - - 0.727 0.939 poliovirus receptor-related 4
17. il17rd ENSDARG00000098359 1153 1.659 - 0.716 - - - - - - 0.943 interleukin 17 receptor D [Source:ZFIN;Acc:ZDB-GENE-020320-5]
18. ephb4a ENSDARG00000100725 1749 1.651 - - - - - - - 0.705 0.946 eph receptor B4a [Source:ZFIN;Acc:ZDB-GENE-990415-62]
19. SVIL SVIL 2589 1.635 - - - - - - - 0.762 0.873
20. gstm gstm 4064 1.633 - - - - - - - 0.749 0.884
21. atf7ip ENSDARG00000069619 5495 1.632 - - - - - - - 0.900 0.732 activating transcription factor 7 interacting protein [Source:ZFIN;Acc:ZDB-GENE-061103-178]
22. zcchc10 ENSDARG00000091092 1333 1.619 - 0.792 - - - - - 0.827 - zinc finger, CCHC domain containing 10 [Source:ZFIN;Acc:ZDB-GENE-030131-6172]
23. actr1 ENSDARG00000011611 3879 1.617 - - - - - - - 0.725 0.892 ARP1 actin related protein 1, centractin [Source:ZFIN;Acc:ZDB-GENE-040426-2695]
24. KIF26A KIF26A 1077 1.617 0.881 0.736 - - - - - - -
25. dlx2b ENSDARG00000017174, ENSDARG00000116017 580 1.615 - - - - - 0.705 - - 0.910 distal-less homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-980526-18]
26. trim13 ENSDARG00000010010, ENSDARG00000110876, ENSDARG00000114862 767 1.604 - - - - - 0.789 - 0.815 - tripartite motif containing 13 [Source:ZFIN;Acc:ZDB-GENE-050522-516]
27. prmt1 ENSDARG00000010246 11311 1.597 - - 0.725 - - - - 0.872 - protein arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-693]
28. obfc1 obfc1 156 1.594 0.762 - - - - - - 0.832 -
29. zgc:162200 ENSDARG00000079934 1225 1.592 - 0.751 - - - - - 0.841 - zgc:162200 [Source:ZFIN;Acc:ZDB-GENE-030131-2989]
30. e2f4 ENSDARG00000101578, ENSDARG00000109320 1783 1.59 - - - - - 0.724 - 0.866 - E2F transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2773]
31. sh3gl3a ENSDARG00000013360 3602 1.584 - - - - - - - 0.795 0.789 SH3-domain GRB2-like 3a [Source:ZFIN;Acc:ZDB-GENE-070112-242]
32. CABZ01058048.1 CABZ01058048.1 268 1.58 - - - - - 0.763 - 0.817 -
33. RPS6KC1 ENSDARG00000104103 746 1.574 - - - - - 0.766 - 0.808 - ribosomal protein S6 kinase polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-081031-83]
34. ENSDARG00000035683 ENSDARG00000035683 219 1.572 0.825 - - - - 0.747 - - -
35. DAPK2 DAPK2 283 1.567 0.765 - - - - - - 0.802 -
36. AREL1 ENSDARG00000100359 260 1.563 - 0.747 - - - 0.816 - - - apoptosis resistant E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:20363]
37. C1H4orf27 C1H4orf27 1961 1.559 - - - - - - 0.704 0.855 -
38. sp3a ENSDARG00000001549 1994 1.558 0.800 - - - - 0.758 - - - sp3a transcription factor [Source:ZFIN;Acc:ZDB-GENE-070410-111]
39. slain2 ENSDARG00000032114 798 1.552 0.749 - - - - - - 0.803 - SLAIN motif family, member 2 [Source:ZFIN;Acc:ZDB-GENE-041014-251]
40. si:dkeyp-13a3.9 si:dkeyp-13a3.9 362 1.551 0.796 0.755 - - - - - - -
41. nup205 ENSDARG00000042530, ENSDARG00000114489 2255 1.549 - - - - - - 0.731 0.818 - nucleoporin 205 [Source:ZFIN;Acc:ZDB-GENE-040715-8]
42. ddx19 ENSDARG00000005699 4602 1.547 - - - 0.723 - - - 0.824 - DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-020419-30]
43. mcm7 ENSDARG00000101180 12417 1.546 - - - - - - 0.762 0.784 - minichromosome maintenance complex component 7 [Source:ZFIN;Acc:ZDB-GENE-020419-27]
44. athl1 athl1 172 1.541 0.718 - - - - 0.823 - - -
45. si:dkey-7f3.9 ENSDARG00000079008 318 1.534 - - - - - - 0.720 0.814 - si:dkey-7f3.9 [Source:ZFIN;Acc:ZDB-GENE-100922-197]
46. tcea1 ENSDARG00000003531 2912 1.533 - - - - - - 0.803 0.730 - transcription elongation factor A (SII), 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8049]
47. PTGFRN_1 ENSDARG00000075505 1447 1.533 0.774 - - - - 0.759 - - - prostaglandin F2 receptor inhibitor [Source:HGNC Symbol;Acc:HGNC:9601]
48. ireb2 ENSDARG00000021466 699 1.532 - - - - - - 0.703 0.829 - iron-responsive element binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-051205-1]
49. MAGI3 MAGI3 114 1.53 0.807 0.723 - - - - - - -
50. rbb4 rbb4 15541 1.53 - - 0.702 - - - - 0.828 -
51. si:dkey-12e7.1 ENSDARG00000069328, ENSDARG00000109272 239 1.529 - - - - - 0.718 - 0.811 - si:dkey-12e7.1 [Source:ZFIN;Acc:ZDB-GENE-050419-173]
52. dapk1 ENSDARG00000060093 351 1.527 - - - - - 0.770 - 0.757 - death-associated protein kinase 1 [Source:ZFIN;Acc:ZDB-GENE-060526-177]
53. ftr29 ENSDARG00000075355 172 1.519 0.713 - - - - - - 0.806 - finTRIM family, member 29 [Source:ZFIN;Acc:ZDB-GENE-050417-159]
54. zfand2a ENSDARG00000103511 829 1.518 0.760 - - - - 0.758 - - - zinc finger, AN1-type domain 2A [Source:ZFIN;Acc:ZDB-GENE-040426-1596]
55. si:ch211-281g2.4 si:ch211-281g2.4 121 1.512 0.806 - - - - 0.706 - - -
56. tmed4 ENSDARG00000024954 3476 1.503 - - - - - - - 0.751 0.752 transmembrane p24 trafficking protein 4 [Source:ZFIN;Acc:ZDB-GENE-040625-140]
57. tacc3 ENSDARG00000005454 2305 1.501 - - - 0.742 - - 0.759 - - transforming, acidic coiled-coil containing protein 3 [Source:ZFIN;Acc:ZDB-GENE-050522-327]
58. trabd ENSDARG00000010445 195 1.497 0.726 - - - - 0.771 - - - TraB domain containing [Source:ZFIN;Acc:ZDB-GENE-030131-1301]
59. vps4b ENSDARG00000069175 1922 1.496 0.727 - - - - 0.769 - - - vacuolar protein sorting 4b homolog B (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040426-1235]
60. irs1 ENSDARG00000054087 1809 1.484 0.763 - - - - 0.721 - - - insulin receptor substrate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-872]
61. SHF SHF 92 1.482 0.759 0.723 - - - - - - -
62. pim3 ENSDARG00000055129 1517 1.474 0.735 - - - - 0.739 - - - Pim-3 proto-oncogene, serine/threonine kinase [Source:ZFIN;Acc:ZDB-GENE-050809-111]
63. CABZ01064069.1 CABZ01064069.1 219 1.467 - 0.756 - - - 0.711 - - -
64. gmeb1 ENSDARG00000062060 456 1.463 0.752 - - - - 0.711 - - - glucocorticoid modulatory element binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-060503-35]
65. slc17a5 ENSDARG00000055190 857 1.457 - 0.734 - - - 0.723 - - - solute carrier family 17 (acidic sugar transporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-060929-1158]
66. ddx23 ENSDARG00000021945, ENSDARG00000116153 2265 1.452 - - - 0.747 - - 0.705 - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Source:ZFIN;Acc:ZDB-GENE-030131-6215]
67. usp10 ENSDARG00000103422 4247 1.437 - - - - - 0.732 0.705 - - ubiquitin specific peptidase 10 [Source:ZFIN;Acc:ZDB-GENE-030219-132]
68. tsr2 ENSDARG00000005772 1155 1.427 - 0.712 - - - - 0.715 - - TSR2, 20S rRNA accumulation, homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-021231-2]
69. WIZ_1 WIZ_1 378 1.42 - - 0.702 - - 0.718 - - -
70. ptrh2 ENSDARG00000077339, ENSDARG00000111027 211 1.414 0.711 0.703 - - - - - - - peptidyl-tRNA hydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-050522-163]
71. brms1la ENSDARG00000006235 2011 1.408 - 0.706 - - - - 0.702 - - BRMS1 like transcriptional repressor a [Source:ZFIN;Acc:ZDB-GENE-050913-49]
72. ube2j1 ENSDARG00000033489 497 1.407 0.705 - - - - - - 0.702 - ubiquitin-conjugating enzyme E2, J1 [Source:ZFIN;Acc:ZDB-GENE-040426-2853]
73. cep170a cep170a 652 0.967 - - - - - - - - 0.967
74. snrpa1 ENSDARG00000024651 3306 0.965 - - - - - - - - 0.965 small nuclear ribonucleoprotein polypeptide A' [Source:ZFIN;Acc:ZDB-GENE-041114-82]
75. sin3ab ENSDARG00000059812 2140 0.959 - - - - - - - - 0.959 SIN3 transcription regulator family member Ab [Source:ZFIN;Acc:ZDB-GENE-030131-2066]
76. ing2 ENSDARG00000104907 1336 0.957 - - - - - - - - 0.957 inhibitor of growth family, member 2 [Source:ZFIN;Acc:ZDB-GENE-040718-147]
77. MALSU1 MALSU1 1251 0.952 - - - - - - - - 0.952
78. PACS1_1 PACS1_1 1264 0.952 - - - - - - - - 0.952
79. pde4ba ENSDARG00000032868, ENSDARG00000110575 1024 0.951 - - - - - - - - 0.951 phosphodiesterase 4B, cAMP-specific a [Source:ZFIN;Acc:ZDB-GENE-030131-9570]
80. rbpja ENSDARG00000003398 1309 0.951 - - - - - - - - 0.951 recombination signal binding protein for immunoglobulin kappa J region a [Source:ZFIN;Acc:ZDB-GENE-031117-1]
81. nol7 ENSDARG00000075795 1559 0.95 - - - - - - - - 0.950 nucleolar protein 7 [Source:ZFIN;Acc:ZDB-GENE-030131-9100]
82. fam65b 557 0.949 - - - - - - - - 0.949 family with sequence similarity 65, member B, transcript variant X4
83. PDZD8 ENSDARG00000088699 844 0.949 - - - - - - - - 0.949 PDZ domain containing 8 [Source:ZFIN;Acc:ZDB-GENE-110310-2]
84. PGBD4_3 PGBD4_3 861 0.948 - - - - - - - - 0.948
85. coil ENSDARG00000040070 863 0.948 - - - - - - - - 0.948 coilin p80 [Source:ZFIN;Acc:ZDB-GENE-000330-8]
86. prc1a ENSDARG00000100918 1746 0.948 - - - - - - - - 0.948 protein regulator of cytokinesis 1a [Source:ZFIN;Acc:ZDB-GENE-020801-3]
87. CACUL1 ENSDARG00000021885 691 0.947 - - - - - - - - 0.947 CDK2 associated cullin domain 1 [Source:ZFIN;Acc:ZDB-GENE-170113-2]
88. ppp5c ENSDARG00000034313 8794 0.947 - - - - - - - - 0.947 protein phosphatase 5, catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-050327-75]
89. TSC22D1 ENSDARG00000038306 517 0.947 - - - - - - - - 0.947 TSC22 domain family, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7785]
90. RNF5 ENSDARG00000075606 1730 0.947 - - - - - - - - 0.947 ring finger protein 5 [Source:HGNC Symbol;Acc:HGNC:10068]
91. FBXO33 ENSDARG00000075400 1164 0.947 - - - - - - - - 0.947 F-box protein 33 [Source:ZFIN;Acc:ZDB-GENE-100618-2]
92. bmp2b ENSDARG00000041430, ENSDARG00000115191 894 0.947 - - - - - - - - 0.947 bone morphogenetic protein 2b [Source:ZFIN;Acc:ZDB-GENE-980526-474]
93. si:dkeyp-4f2.5 si:dkeyp-4f2.5 232 0.946 - - - - - - - - 0.946
94. NSMCE2 ENSDARG00000076379 2133 0.946 - - - - - - - - 0.946 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase [Source:ZFIN;Acc:ZDB-GENE-081022-128]
95. stmn4l ENSDARG00000043932 654 0.946 - - - - - - - - 0.946 stathmin-like 4, like [Source:ZFIN;Acc:ZDB-GENE-040718-301]
96. csrp1a ENSDARG00000006603 5188 0.946 - - - - - - - - 0.946 cysteine and glycine-rich protein 1a [Source:ZFIN;Acc:ZDB-GENE-030909-4]
97. hsd3b7 ENSDARG00000036966, ENSDARG00000111892, ENSDARG00000114115 797 0.945 - - - - - - - - 0.945 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase [Source:ZFIN;Acc:ZDB-GENE-030131-5673]
98. daam1a ENSDARG00000015059 1460 0.945 - - - - - - - - 0.945 dishevelled associated activator of morphogenesis 1a [Source:ZFIN;Acc:ZDB-GENE-030911-6]
99. MON1B_1 MON1B_1 697 0.945 - - - - - - - - 0.945
100. m6pr ENSDARG00000018432 1411 0.945 - - - - - - - - 0.945 mannose-6-phosphate receptor (cation dependent) [Source:ZFIN;Acc:ZDB-GENE-040426-2285]

There are 1424 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA