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Results for cpsf3

Gene Name Gene ID Reads Annotation
cpsf3 ENSDARG00000027649 6897 cleavage and polyadenylation specific factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3275]










Genes with expression patterns similar to cpsf3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. cpsf3 ENSDARG00000027649 6897 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 cleavage and polyadenylation specific factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3275]
2. arl14ep ENSDARG00000001210 3029 3.287 - - - 0.731 0.923 - 0.721 - 0.912 ADP-ribosylation factor-like 14 effector protein [Source:ZFIN;Acc:ZDB-GENE-060825-216]
3. IM:7163548 IM:7163548 6540 2.645 - 0.974 - 0.865 - - 0.806 - -
4. zgc:91910 ENSDARG00000035678 6172 2.589 - 0.968 - - - - 0.759 - 0.862 zgc:91910 [Source:ZFIN;Acc:ZDB-GENE-040808-48]
5. maf1 ENSDARG00000013122 3365 2.588 - - - - 0.913 - 0.798 - 0.877 MAF1 homolog, negative regulator of RNA polymerase III [Source:ZFIN;Acc:ZDB-GENE-040426-2788]
6. snrpe ENSDARG00000033175 7462 2.572 - - - - 0.946 - 0.772 - 0.854 small nuclear ribonucleoprotein polypeptide E [Source:ZFIN;Acc:ZDB-GENE-040426-1112]
7. psmb2 ENSDARG00000031511 4016 2.559 0.759 - - - 0.921 - - 0.879 - proteasome subunit beta 2 [Source:ZFIN;Acc:ZDB-GENE-040718-353]
8. hcfc1b ENSDARG00000012519 3633 2.551 - - - - 0.937 - 0.709 0.905 - host cell factor C1b [Source:ZFIN;Acc:ZDB-GENE-030131-2411]
9. pl10 pl10 10795 2.493 - - 0.878 - 0.781 - 0.834 - -
10. snrpd3l ENSDARG00000076283 7655 2.468 - 0.896 - - - - 0.705 0.867 - small nuclear ribonucleoprotein D3 polypeptide, like [Source:ZFIN;Acc:ZDB-GENE-030131-5219]
11. mllt4 mllt4 2939 2.457 - 0.971 - - - 0.716 0.770 - -
12. Sep-02 Sep-02 10074 2.452 - - - - 0.908 0.806 0.738 - -
13. col16a1 ENSDARG00000009194 5600 2.434 - - 0.720 - 0.895 - - - 0.819 collagen, type XVI, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-060503-351]
14. arpc1a ENSDARG00000008383 7353 2.417 - - - - 0.898 - 0.723 0.796 - actin related protein 2/3 complex, subunit 1A [Source:ZFIN;Acc:ZDB-GENE-040116-1]
15. paxip1 ENSDARG00000005606 1417 2.403 - - 0.827 - - - 0.711 0.865 - PAX interacting (with transcription-activation domain) protein 1 [Source:ZFIN;Acc:ZDB-GENE-041010-214]
16. tardbpl ENSDARG00000004452, ENSDARG00000116205 12160 2.395 - - - 0.710 0.939 - 0.746 - - TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB-GENE-031030-1]
17. ptenb ENSDARG00000056623 5783 2.36 - - - - - 0.728 0.760 - 0.872 phosphatase and tensin homolog B [Source:ZFIN;Acc:ZDB-GENE-030616-47]
18. ilf3b ENSDARG00000105177 9473 2.319 - 0.793 - 0.726 - - - - 0.800 interleukin enhancer binding factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-587]
19. akirin2 ENSDARG00000058729 13245 2.288 - - 0.803 - - 0.712 0.773 - - akirin 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2944]
20. slc1a5 ENSDARG00000099186 7580 2.275 - - 0.720 - - - - 0.793 0.762 solute carrier family 1 (neutral amino acid transporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-070501-4]
21. smarce1 ENSDARG00000016871 9628 2.274 - - 0.835 0.707 - - 0.732 - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-967]
22. sfpq ENSDARG00000011564, ENSDARG00000115611 15626 2.247 - - 0.769 0.717 - - 0.761 - - splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
23. DENND4B ENSDARG00000102914 1001 1.871 - 0.973 - - 0.898 - - - - DENN/MADD domain containing 4B [Source:ZFIN;Acc:ZDB-GENE-130530-684]
24. timm10 ENSDARG00000069116 4459 1.842 - - - - 0.907 - - - 0.935 translocase of inner mitochondrial membrane 10 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040718-427]
25. ppa1b ENSDARG00000030441 9027 1.841 - - - - 0.904 - - - 0.937 pyrophosphatase (inorganic) 1b [Source:ZFIN;Acc:ZDB-GENE-050417-375]
26. cyt1 ENSDARG00000092947 1717 1.834 - 0.974 - - - - - - 0.860 type I cytokeratin, enveloping layer [Source:ZFIN;Acc:ZDB-GENE-991008-6]
27. msi2b ENSDARG00000032614 3095 1.829 - 0.964 - - - - - 0.865 - musashi RNA-binding protein 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1268]
28. CCDC71 CCDC71 2442 1.821 - - - - 0.915 - - - 0.906
29. KANSL1_1 KANSL1_1 1809 1.82 - 0.916 - - - - - - 0.904
30. lztfl1 ENSDARG00000105010 1697 1.808 - 0.973 - - - - - 0.835 - leucine zipper transcription factor-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-945]
31. mllt10 ENSDARG00000045401 7557 1.802 - - - - 0.935 - 0.867 - - MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:ZFIN;Acc:ZDB-GENE-041114-176]
32. phb ENSDARG00000057414 9551 1.801 - 0.957 - - 0.844 - - - - prohibitin [Source:ZFIN;Acc:ZDB-GENE-030131-6577]
33. git2b ENSDARG00000042791, ENSDARG00000111846 1332 1.793 - - - - 0.903 - - - 0.890 G protein-coupled receptor kinase interacting ArfGAP 2b [Source:ZFIN;Acc:ZDB-GENE-070112-2192]
34. prmt1 ENSDARG00000010246 11311 1.791 - - - - - - 0.893 - 0.898 protein arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-693]
35. cltcb ENSDARG00000090716 5544 1.785 - - - - 0.921 - 0.864 - - clathrin, heavy chain b (Hc) [Source:ZFIN;Acc:ZDB-GENE-050227-12]
36. ash2l ENSDARG00000060392 4916 1.778 - - - - 0.937 - 0.841 - - ash2 like, histone lysine methyltransferase complex subunit [Source:ZFIN;Acc:ZDB-GENE-030131-494]
37. commd4 ENSDARG00000061946 3281 1.776 - - - - 0.896 - - - 0.880 COMM domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-060929-600]
38. atrx ENSDARG00000042236, ENSDARG00000112921, ENSDARG00000116878 7922 1.769 - 0.971 - 0.798 - - - - - alpha thalassemia/mental retardation syndrome X-linked homolog (human) [Source:ZFIN;Acc:ZDB-GENE-030912-11]
39. mapkapk2a ENSDARG00000002552, ENSDARG00000116786 4233 1.768 - 0.965 0.803 - - - - - - mitogen-activated protein kinase-activated protein kinase 2a [Source:ZFIN;Acc:ZDB-GENE-030131-5532]
40. epc1 epc1 1164 1.768 - - - - 0.897 - - 0.871 -
41. nufip2 ENSDARG00000069066 3965 1.76 - 0.969 - - - - - - 0.791 nuclear fragile X mental retardation protein interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-041111-7]
42. znf292a ENSDARG00000016763 2253 1.758 - - 0.868 - - - - 0.890 - zinc finger protein 292a [Source:ZFIN;Acc:ZDB-GENE-071004-18]
43. CABZ01076275.1 ENSDARG00000100753 5137 1.757 - 0.974 0.783 - - - - - - scavenger receptor class B, member 2b [Source:NCBI gene;Acc:564077]
44. scaf11 ENSDARG00000045885 3531 1.736 - - - - - - - 0.859 0.877 SR-related CTD-associated factor 11 [Source:ZFIN;Acc:ZDB-GENE-041210-22]
45. rnaseh2a ENSDARG00000018891 1979 1.735 - 0.973 - 0.762 - - - - - ribonuclease H2, subunit A [Source:ZFIN;Acc:ZDB-GENE-040426-976]
46. pabpn1 ENSDARG00000045373 4876 1.731 - - 0.891 - - - - 0.840 - poly(A) binding protein, nuclear 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2401]
47. WIPF2 WIPF2 3171 1.731 - 0.982 - - - 0.749 - - -
48. ss18 ENSDARG00000002970 2618 1.722 - - 0.857 - - - 0.865 - - synovial sarcoma translocation, chromosome 18 (H. sapiens) [Source:ZFIN;Acc:ZDB-GENE-030131-4867]
49. vgll4b ENSDARG00000103730 5266 1.719 - - - - 0.919 - 0.800 - - vestigial-like family member 4b [Source:ZFIN;Acc:ZDB-GENE-040426-2445]
50. calm1a ENSDARG00000021811 4791 1.712 - 0.970 - - - - - 0.742 - calmodulin 1a [Source:ZFIN;Acc:ZDB-GENE-030131-8308]
51. nr2f2 ENSDARG00000040926 5213 1.71 - - - - - - 0.787 - 0.923 nuclear receptor subfamily 2, group F, member 2 [Source:ZFIN;Acc:ZDB-GENE-990415-252]
52. pdap1a ENSDARG00000092546, ENSDARG00000116115 7617 1.709 - - 0.928 - - - 0.781 - - pdgfa associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1693]
53. urm1 ENSDARG00000091198, ENSDARG00000111234 1213 1.707 - 0.968 - - - - 0.739 - - ubiquitin related modifier 1 [Source:ZFIN;Acc:ZDB-GENE-091204-300]
54. ppp2r2d ENSDARG00000102009 5710 1.706 - - - 0.754 - - - - 0.952 protein phosphatase 2, regulatory subunit B, delta [Source:ZFIN;Acc:ZDB-GENE-040426-2086]
55. ppp1cab ENSDARG00000071566 4350 1.701 - - - - 0.920 - 0.781 - - protein phosphatase 1, catalytic subunit, alpha isozyme b [Source:ZFIN;Acc:ZDB-GENE-030131-5512]
56. zgc:63587 ENSDARG00000017140 8399 1.7 - 0.968 - - - - - - 0.732 zgc:63587 [Source:ZFIN;Acc:ZDB-GENE-040426-1175]
57. lbr ENSDARG00000014013 4835 1.694 - - 0.880 - - - 0.814 - - lamin B receptor [Source:ZFIN;Acc:ZDB-GENE-030804-11]
58. hsbp1b ENSDARG00000041921 6170 1.692 - - - - - - - 0.798 0.894 heat shock factor binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1721]
59. stag2b ENSDARG00000053668, ENSDARG00000109728 7193 1.69 - - - 0.826 - - - 0.864 - stromal antigen 2b [Source:ZFIN;Acc:ZDB-GENE-030131-2785]
60. atp6v1f ENSDARG00000045543 3445 1.688 - - - - - - - 0.798 0.890 ATPase H+ transporting V1 subunit F [Source:ZFIN;Acc:ZDB-GENE-040718-259]
61. eif3g ENSDARG00000016889 10367 1.688 - 0.943 0.745 - - - - - - eukaryotic translation initiation factor 3, subunit G [Source:ZFIN;Acc:ZDB-GENE-040426-1076]
62. dgcr2 ENSDARG00000042962, ENSDARG00000109230 2339 1.687 - - - - - - 0.845 0.842 - DiGeorge syndrome critical region gene 2 [Source:ZFIN;Acc:ZDB-GENE-040718-404]
63. si:dkey-193b15.6 si:dkey-193b15.6 1340 1.686 - - - - - - - 0.815 0.871
64. sema3fa ENSDARG00000011163 759 1.686 - - 0.787 - 0.899 - - - - sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa [Source:ZFIN;Acc:ZDB-GENE-050513-1]
65. rpl32 ENSDARG00000054818, ENSDARG00000110237, ENSDARG00000115707 37036 1.685 - 0.893 - - 0.792 - - - - ribosomal protein L32 [Source:ZFIN;Acc:ZDB-GENE-060331-105]
66. ptpn9a ENSDARG00000077495 2295 1.685 - - 0.794 - - - 0.891 - - protein tyrosine phosphatase, non-receptor type 9, a [Source:ZFIN;Acc:ZDB-GENE-101027-1]
67. ppig ENSDARG00000044431 3427 1.681 - - - - - - 0.762 - 0.919 peptidylprolyl isomerase G (cyclophilin G) [Source:ZFIN;Acc:ZDB-GENE-040426-2822]
68. cpla2 cpla2 1031 1.68 - - - - - - - 0.808 0.872
69. cuedc1b ENSDARG00000054748 1638 1.677 - - - - - - 0.831 0.846 - CUE domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-070424-29]
70. klf11a ENSDARG00000030844 3972 1.677 - - - - 0.900 0.777 - - - Kruppel-like factor 11a [Source:ZFIN;Acc:ZDB-GENE-030131-3568]
71. si:dkey-153m14.1 si:dkey-153m14.1 4591 1.676 - 0.972 - - - - 0.704 - -
72. asb12a ENSDARG00000017086, ENSDARG00000110715 4230 1.674 - 0.969 0.705 - - - - - - ankyrin repeat and SOCS box-containing 12a [Source:ZFIN;Acc:ZDB-GENE-030131-1647]
73. kifc1 ENSDARG00000001558 6658 1.673 - - 0.873 - - - 0.800 - - kinesin family member C1 [Source:ZFIN;Acc:ZDB-GENE-000208-21]
74. arl6ip1 ENSDARG00000054578, ENSDARG00000112340 11714 1.67 - - - - 0.926 - 0.744 - - ADP-ribosylation factor-like 6 interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1087]
75. ptpn13 ENSDARG00000103699 2866 1.667 - - 0.794 - - - - - 0.873 protein tyrosine phosphatase, non-receptor type 13 [Source:ZFIN;Acc:ZDB-GENE-070410-72]
76. slit1a ENSDARG00000044954 3810 1.664 - - - - - - - 0.792 0.872 slit homolog 1a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030722-3]
77. cmip ENSDARG00000062933 4521 1.664 - - 0.772 - - - - - 0.892 c-Maf inducing protein [Source:ZFIN;Acc:ZDB-GENE-050419-50]
78. zgc:85777 ENSDARG00000027009, ENSDARG00000112673 1499 1.664 - - 0.779 - - - - - 0.885 zgc:85777 [Source:ZFIN;Acc:ZDB-GENE-040426-2210]
79. nup188 ENSDARG00000030022 2398 1.663 - - - - - - 0.753 - 0.910 nucleoporin 188 [Source:ZFIN;Acc:ZDB-GENE-030131-7184]
80. ewsr1b ENSDARG00000020465, ENSDARG00000117011 10260 1.659 - - - 0.806 - - 0.853 - - EWS RNA-binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-1600]
81. tmpoa ENSDARG00000007315 3638 1.659 - - - 0.750 - - - - 0.909 thymopoietin a [Source:ZFIN;Acc:ZDB-GENE-030131-6003]
82. MAF1 ENSDARG00000013122 6899 1.658 0.712 - - - 0.946 - - - - MAF1 homolog, negative regulator of RNA polymerase III [Source:ZFIN;Acc:ZDB-GENE-040426-2788]
83. fkbp8 ENSDARG00000001734 1709 1.658 - - 0.771 - - - - - 0.887 FK506 binding protein 8 [Source:ZFIN;Acc:ZDB-GENE-040426-1849]
84. stau1 ENSDARG00000044182, ENSDARG00000115476 6121 1.655 - - - - 0.929 0.726 - - - staufen double-stranded RNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6372]
85. srebf2 ENSDARG00000063438 1982 1.652 - - - - - - - 0.822 0.830 sterol regulatory element binding transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-070410-8]
86. fkbp3 ENSDARG00000098059 5428 1.651 - - - - 0.920 - 0.731 - - FK506 binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-030616-419]
87. hnrnpk ENSDARG00000018914 8841 1.65 - - - - - - 0.738 - 0.912 heterogeneous nuclear ribonucleoprotein K [Source:ZFIN;Acc:ZDB-GENE-040426-1926]
88. aspm ENSDARG00000103754 5708 1.648 - - - - - 0.760 - - 0.888 abnormal spindle microtubule assembly [Source:ZFIN;Acc:ZDB-GENE-050208-620]
89. lman2 ENSDARG00000061854 6251 1.647 - - - - 0.761 - - - 0.886 lectin, mannose-binding 2 [Source:ZFIN;Acc:ZDB-GENE-070209-149]
90. ncl1 2835 1.644 - - - - - - 0.745 - 0.899 nicalin, transcript variant X3
91. pcnp ENSDARG00000037713 2754 1.644 - - 0.805 - - - - 0.839 - PEST proteolytic signal containing nuclear protein [Source:ZFIN;Acc:ZDB-GENE-041010-130]
92. yy1b ENSDARG00000027978 2669 1.643 - - 0.789 - - - - 0.854 - YY1 transcription factor b [Source:ZFIN;Acc:ZDB-GENE-040426-2127]
93. nup62l ENSDARG00000020527, ENSDARG00000111836, ENSDARG00000112620 3763 1.643 - - - 0.721 0.922 - - - - nucleoporin 62 like [Source:ZFIN;Acc:ZDB-GENE-030131-8491]
94. ptprfa ENSDARG00000103479 1250 1.643 - - - - - - 0.759 - 0.884 protein tyrosine phosphatase, receptor type, f, a [Source:ZFIN;Acc:ZDB-GENE-020107-2]
95. magi1b ENSDARG00000003169 2056 1.642 - - - - - - 0.732 - 0.910 membrane associated guanylate kinase, WW and PDZ domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-030131-5110]
96. rab11a ENSDARG00000041450, ENSDARG00000109465 7418 1.641 - - 0.797 - 0.844 - - - - RAB11a, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-041114-53]
97. arhgdia ENSDARG00000043795 14642 1.64 - 0.753 - - 0.887 - - - - Rho GDP dissociation inhibitor (GDI) alpha [Source:ZFIN;Acc:ZDB-GENE-040426-2816]
98. kansl1a ENSDARG00000090895 2593 1.638 - - - - - - 0.797 0.841 - KAT8 regulatory NSL complex subunit 1a [Source:ZFIN;Acc:ZDB-GENE-121219-5]
99. ppp2cb ENSDARG00000099241, ENSDARG00000111489 25466 1.638 - 0.864 - - - - 0.774 - - protein phosphatase 2, catalytic subunit, beta isozyme [Source:ZFIN;Acc:ZDB-GENE-040426-2487]
100. CCNA2 ENSDARG00000011094 3996 1.637 - - - 0.725 0.912 - - - - cyclin A2 [Source:ZFIN;Acc:ZDB-GENE-020418-1]

There are 1476 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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