Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for cpsf1

Gene Name Gene ID Reads Annotation
cpsf1 ENSDARG00000034178 2036 cleavage and polyadenylation specific factor 1 [Source:ZFIN;Acc:ZDB-GENE-040709-2]










Genes with expression patterns similar to cpsf1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. cpsf1 ENSDARG00000034178 2036 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 cleavage and polyadenylation specific factor 1 [Source:ZFIN;Acc:ZDB-GENE-040709-2]
2. rad51 ENSDARG00000041411, ENSDARG00000111948 1056 2.803 - - 0.968 - - - 0.974 - 0.861 RAD51 recombinase [Source:ZFIN;Acc:ZDB-GENE-040426-2286]
3. zc3h18 ENSDARG00000062506 1676 2.693 - 0.748 0.959 - - - 0.986 - - zinc finger CCCH-type containing 18 [Source:ZFIN;Acc:ZDB-GENE-050419-13]
4. rybpb ENSDARG00000053459 1464 2.648 - - 0.957 0.710 - - 0.981 - - RING1 and YY1 binding protein b [Source:ZFIN;Acc:ZDB-GENE-061103-96]
5. phf10 ENSDARG00000070084 1210 2.636 - - 0.957 - - 0.793 - - 0.886 PHD finger protein 10 [Source:ZFIN;Acc:ZDB-GENE-040426-1573]
6. rimkla ENSDARG00000016830, ENSDARG00000112193 4111 2.589 - - 0.954 - - 0.763 - - 0.872 ribosomal modification protein rimK-like family member A [Source:ZFIN;Acc:ZDB-GENE-040912-20]
7. zgc:113348 ENSDARG00000103795 1351 2.58 - - 0.973 - - 0.708 - - 0.899 zgc:113348 [Source:ZFIN;Acc:ZDB-GENE-050227-10]
8. dhdds ENSDARG00000039851 1135 2.551 - 0.723 - - - - 0.979 - 0.849 dehydrodolichyl diphosphate synthase [Source:ZFIN;Acc:ZDB-GENE-040426-2236]
9. daxx ENSDARG00000000729 734 2.447 - - - 0.706 - 0.847 - - 0.894 death-domain associated protein [Source:ZFIN;Acc:ZDB-GENE-010110-3]
10. snrnp70 ENSDARG00000077126 5921 2.436 - - - - - 0.703 0.978 - 0.755 small nuclear ribonucleoprotein 70 (U1) [Source:ZFIN;Acc:ZDB-GENE-040825-2]
11. gstal gstal 1865 2.387 - 0.748 - - - - 0.905 - 0.734
12. kdm5c ENSDARG00000006124 4389 2.373 - - 0.858 - - 0.750 - - 0.765 lysine (K)-specific demethylase 5C [Source:ZFIN;Acc:ZDB-GENE-060810-94]
13. si:ch211-133l11.10 ENSDARG00000005626 381 2.321 - - - - - 0.769 - 0.706 0.846 si:ch211-133l11.10 [Source:ZFIN;Acc:ZDB-GENE-141219-14]
14. clk2a ENSDARG00000062954 1890 1.942 - - 0.967 - - - 0.975 - - CDC-like kinase 2a [Source:ZFIN;Acc:ZDB-GENE-030131-298]
15. srrm2 ENSDARG00000037965 1967 1.927 - - 0.949 - - - 0.978 - - serine/arginine repetitive matrix 2 [Source:ZFIN;Acc:ZDB-GENE-050522-399]
16. safb ENSDARG00000020467 5608 1.904 - - 0.946 - - - 0.958 - - scaffold attachment factor B [Source:ZFIN;Acc:ZDB-GENE-030131-698]
17. gigfy2 3194 1.896 - - 0.951 - - - 0.945 - - GRB10 interacting GYF protein 2, transcript variant X1
18. ifrd1 ENSDARG00000068708 2858 1.85 - - - - - - 0.927 - 0.923 interferon-related developmental regulator 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6132]
19. CABZ01087568.1 CABZ01087568.1 1487 1.85 - - 0.956 - - - - - 0.894
20. ik ENSDARG00000004161 3132 1.841 - - - - - - 0.975 - 0.866 IK cytokine [Source:ZFIN;Acc:ZDB-GENE-030131-960]
21. ttc1 ENSDARG00000044567 1141 1.836 - - - - - - 0.975 - 0.861 tetratricopeptide repeat domain 1 [Source:ZFIN;Acc:ZDB-GENE-041114-80]
22. rnd1l rnd1l 984 1.834 - - 0.961 - - 0.873 - - -
23. eya3 ENSDARG00000036100 1965 1.831 - - 0.955 - - - - - 0.876 EYA transcriptional coactivator and phosphatase 3 [Source:ZFIN;Acc:ZDB-GENE-060503-864]
24. HDX ENSDARG00000079382 513 1.826 - - 0.966 - - - - - 0.860 highly divergent homeobox [Source:ZFIN;Acc:ZDB-GENE-140106-165]
25. TAF2 ENSDARG00000102307 1401 1.823 - - - - - - 0.942 - 0.881 TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-030131-3207]
26. rnf121 ENSDARG00000060282 1809 1.814 - - 0.948 - - - - - 0.866 ring finger protein 121 [Source:ZFIN;Acc:ZDB-GENE-050809-3]
27. uhrf1 ENSDARG00000103409 3282 1.812 - - - - - - 0.988 - 0.824 ubiquitin-like with PHD and ring finger domains 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2039]
28. smg6 ENSDARG00000100481 493 1.812 - - 0.962 - - - - - 0.850 SMG6 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-081107-52]
29. ftsjd2 ftsjd2 2694 1.81 - - 0.956 - - - - - 0.854
30. mapta ENSDARG00000089314 2038 1.805 - - - - - 0.817 0.988 - - microtubule-associated protein tau a [Source:ZFIN;Acc:ZDB-GENE-081027-1]
31. arl6ip4 ENSDARG00000105036, ENSDARG00000110324, ENSDARG00000116805 1142 1.801 - - 0.964 - - 0.837 - - - ADP-ribosylation factor-like 6 interacting protein 4 [Source:ZFIN;Acc:ZDB-GENE-050522-405]
32. ubl3b ENSDARG00000021556 1210 1.798 - - 0.962 - - - - - 0.836 ubiquitin-like 3b [Source:ZFIN;Acc:ZDB-GENE-040630-4]
33. smurf1 ENSDARG00000016086 878 1.797 - - - - - - 0.978 - 0.819 SMAD specific E3 ubiquitin protein ligase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2744]
34. prkcda ENSDARG00000009208 1508 1.793 - - 0.950 - - - 0.843 - - protein kinase C, delta a [Source:ZFIN;Acc:ZDB-GENE-030131-6503]
35. pes ENSDARG00000018902 3286 1.778 - - - - - - 0.982 - 0.796 pescadillo [Source:ZFIN;Acc:ZDB-GENE-990415-206]
36. DLC1 ENSDARG00000079317 2149 1.762 - - 0.956 - - - - - 0.806 DLC1 Rho GTPase activating protein [Source:ZFIN;Acc:ZDB-GENE-130206-12]
37. kdm5ba ENSDARG00000057093, ENSDARG00000111539 3302 1.761 - - - - - 0.777 0.984 - - lysine (K)-specific demethylase 5Ba [Source:ZFIN;Acc:ZDB-GENE-030131-5379]
38. mmp16a 1128 1.754 - - - - - - 0.910 - 0.844 matrix metallopeptidase 16a (membrane-inserted)
39. ek1 ENSDARG00000020080 742 1.754 - - 0.966 - - 0.788 - - - eph-like kinase 1 [Source:ZFIN;Acc:ZDB-GENE-990415-58]
40. MSL1_1 MSL1_1 2365 1.754 - - 0.959 - - 0.795 - - -
41. BX323045.3 BX323045.3 1044 1.754 - - 0.963 0.791 - - - - -
42. rac3b ENSDARG00000020795 1523 1.751 - - - - - 0.768 0.983 - - Rac family small GTPase 3b [Source:ZFIN;Acc:ZDB-GENE-080220-21]
43. dut ENSDARG00000106529 3120 1.749 - - 0.930 - - - - - 0.819 deoxyuridine triphosphatase [Source:ZFIN;Acc:ZDB-GENE-041010-93]
44. CABZ01068263.1 CABZ01068263.1 712 1.745 - 0.756 - - - - 0.989 - -
45. hnrnpd ENSDARG00000059246, ENSDARG00000109297, ENSDARG00000113453 3440 1.744 - - 0.945 - - - - - 0.799 heterogeneous nuclear ribonucleoprotein D [Source:ZFIN;Acc:ZDB-GENE-070424-97]
46. chst13 chst13 669 1.742 - - 0.956 - - 0.786 - - -
47. mrps7 ENSDARG00000101622 889 1.738 - 0.752 - - - - 0.986 - - mitochondrial ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-050809-112]
48. kdm4b ENSDARG00000099675 2037 1.738 - - - - - 0.761 0.977 - - lysine (K)-specific demethylase 4B [Source:ZFIN;Acc:ZDB-GENE-060503-664]
49. ndc80 ENSDARG00000071694 1162 1.732 - - 0.964 - - 0.768 - - - NDC80 kinetochore complex component [Source:ZFIN;Acc:ZDB-GENE-030131-904]
50. inppl1a ENSDARG00000104222 6256 1.727 - - 0.888 - - - 0.839 - - inositol polyphosphate phosphatase-like 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3904]
51. nr2f1a ENSDARG00000052695 5037 1.727 - - 0.890 - - 0.837 - - - nuclear receptor subfamily 2, group F, member 1a [Source:ZFIN;Acc:ZDB-GENE-980526-115]
52. setd8a 2549 1.725 - 0.758 0.967 - - - - - - SET domain containing (lysine methyltransferase) 8a
53. gde1 ENSDARG00000055108, ENSDARG00000110855 1261 1.724 - - - - - - 0.920 - 0.804 glycerophosphodiester phosphodiesterase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-881]
54. EXO5 ENSDARG00000042727, ENSDARG00000111772 282 1.723 - - - - - 0.740 0.983 - - exonuclease 5 [Source:ZFIN;Acc:ZDB-GENE-051113-108]
55. ptpro ENSDARG00000100422, ENSDARG00000110470 1850 1.722 - - - - - 0.841 - - 0.881 protein tyrosine phosphatase, receptor type, O [Source:ZFIN;Acc:ZDB-GENE-070424-54]
56. CU638740.1 CU638740.1 398 1.72 - 0.745 - - - - 0.975 - -
57. CU929431.1 CU929431.1 2234 1.719 - - - - - 0.744 0.975 - -
58. ACTN2 ACTN2 343 1.717 - 0.737 - - - - 0.980 - -
59. eif2a ENSDARG00000101061 3800 1.712 - - - - - 0.741 0.971 - - eukaryotic translation initiation factor 2A [Source:ZFIN;Acc:ZDB-GENE-050626-52]
60. CT990561.1 ENSDARG00000058284 566 1.708 - - 0.958 - - 0.750 - - - EPH receptor A5 [Source:NCBI gene;Acc:797595]
61. xpr1 xpr1 840 1.708 - - - - - 0.886 - - 0.822
62. basp1 ENSDARG00000053358, ENSDARG00000110677 2590 1.705 - - - - - 0.714 0.991 - - brain abundant, membrane attached signal protein 1 [Source:ZFIN;Acc:ZDB-GENE-070424-158]
63. lsm7 ENSDARG00000058328 7191 1.704 - - 0.850 - - - 0.854 - - LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:ZFIN;Acc:ZDB-GENE-030131-8284]
64. pspc1 ENSDARG00000006621 966 1.703 - - - - - 0.835 - - 0.868 paraspeckle component 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9530]
65. her15.2 her15.2 1701 1.703 - - - - - 0.823 - - 0.880
66. kansl3 ENSDARG00000029556 2487 1.702 - - - - - 0.718 0.984 - - KAT8 regulatory NSL complex subunit 3 [Source:ZFIN;Acc:ZDB-GENE-050809-132]
67. exoc6 ENSDARG00000020521 1533 1.701 - - 0.967 - - 0.734 - - - exocyst complex component 6 [Source:ZFIN;Acc:ZDB-GENE-040426-2511]
68. tmem2 2572 1.701 - - 0.955 - - - - - 0.746 transmembrane protein 2, transcript variant X1
69. kif18a ENSDARG00000008022 546 1.7 - - - - - 0.796 - - 0.904 kinesin family member 18A [Source:ZFIN;Acc:ZDB-GENE-040426-862]
70. cdc42 ENSDARG00000044573 11795 1.7 - - 0.835 - - - 0.865 - - cell division cycle 42 [Source:ZFIN;Acc:ZDB-GENE-030131-8783]
71. hnrnpr ENSDARG00000014569 3423 1.698 - - 0.945 - - - - 0.753 - heterogeneous nuclear ribonucleoprotein R [Source:ZFIN;Acc:ZDB-GENE-040426-2766]
72. hes6 ENSDARG00000019335 4754 1.697 - - 0.935 - - 0.762 - - - hes family bHLH transcription factor 6 [Source:ZFIN;Acc:ZDB-GENE-030828-5]
73. RBM6 ENSDARG00000077060 3521 1.695 - - - - - 0.875 - - 0.820 RNA binding motif protein 6 [Source:ZFIN;Acc:ZDB-GENE-050309-79]
74. prr18 ENSDARG00000093768 409 1.694 - - 0.960 - - - - 0.734 - proline rich 18 [Source:ZFIN;Acc:ZDB-GENE-081107-6]
75. abl1 ENSDARG00000035187 3553 1.694 - - - - - - 0.960 - 0.734 c-abl oncogene 1, non-receptor tyrosine kinase [Source:ZFIN;Acc:ZDB-GENE-100812-9]
76. mob2b ENSDARG00000012005 395 1.694 - - - - - 0.712 0.982 - - MOB kinase activator 2b [Source:ZFIN;Acc:ZDB-GENE-060616-319]
77. cars ENSDARG00000036164 2019 1.691 - - 0.934 - - - - - 0.757 cysteinyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030328-29]
78. caly ENSDARG00000036008 1002 1.691 - - - - - 0.814 - - 0.877 calcyon neuron-specific vesicular protein [Source:ZFIN;Acc:ZDB-GENE-090313-405]
79. socs5a ENSDARG00000100717 6927 1.69 - - - - - - 0.965 0.725 - suppressor of cytokine signaling 5a [Source:ZFIN;Acc:ZDB-GENE-061013-408]
80. fam122b ENSDARG00000036500, ENSDARG00000116582 1408 1.69 - 0.801 - - - - - - 0.889 family with sequence similarity 122B [Source:ZFIN;Acc:ZDB-GENE-040801-204]
81. tial1 ENSDARG00000009525 1856 1.689 - - 0.967 - - 0.722 - - - TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1547]
82. fmnl2b ENSDARG00000075041 1744 1.689 - - 0.957 - - 0.732 - - - formin-like 2b [Source:ZFIN;Acc:ZDB-GENE-041111-182]
83. ndufa6 ENSDARG00000038028 2653 1.688 - - - - - - 0.930 - 0.758 NADH:ubiquinone oxidoreductase subunit A6 [Source:ZFIN;Acc:ZDB-GENE-040426-1124]
84. ddx41 666 1.686 - 0.821 - - - - - - 0.865 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
85. abcb7 ENSDARG00000062795 1404 1.682 - - - - - 0.741 0.941 - - ATP-binding cassette, sub-family B (MDR/TAP), member 7 [Source:ZFIN;Acc:ZDB-GENE-050517-10]
86. st8sia2 ENSDARG00000018788 2183 1.682 - - - - - 0.770 - - 0.912 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-020919-4]
87. irx5a ENSDARG00000034043 1694 1.681 - - - - - 0.771 - - 0.910 iroquois homeobox 5a [Source:ZFIN;Acc:ZDB-GENE-010716-2]
88. stxbp1a ENSDARG00000001994 5154 1.68 - - 0.921 - - 0.759 - - - syntaxin binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050626-106]
89. sgcg_1 ENSDARG00000038107 1998 1.68 - - - - - 0.713 0.967 - - sarcoglycan, gamma [Source:ZFIN;Acc:ZDB-GENE-030724-2]
90. hprt1l ENSDARG00000014866 696 1.68 - - - - - 0.841 - - 0.839 hypoxanthine phosphoribosyltransferase 1, like [Source:ZFIN;Acc:ZDB-GENE-040625-17]
91. chchd1 ENSDARG00000029100 2121 1.679 - - - 0.704 - - 0.975 - - coiled-coil-helix-coiled-coil-helix domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060810-176]
92. cd99l2 ENSDARG00000056722 5036 1.672 - - - - - 0.875 - - 0.797 CD99 molecule-like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1986]
93. lpar6a ENSDARG00000062552 1348 1.671 - - 0.951 - - 0.720 - - - lysophosphatidic acid receptor 6a [Source:ZFIN;Acc:ZDB-GENE-061013-343]
94. ankrd50l ENSDARG00000007077 1115 1.671 - - - 0.711 - - 0.960 - - ankyrin repeat domain 50-like [Source:ZFIN;Acc:ZDB-GENE-041008-117]
95. nadl1.2 695 1.666 - - - - - 0.831 - - 0.835 neural adhesion molecule L1.2, transcript variant X1
96. si:dkey-153k10.9 ENSDARG00000004386, ENSDARG00000109564, ENSDARG00000111507 319 1.664 - - - - - 0.805 - - 0.859 si:dkey-153k10.9 [Source:ZFIN;Acc:ZDB-GENE-030131-3893]
97. cnih cnih 8292 1.664 - - - - - 0.817 0.847 - -
98. hsd3b7 ENSDARG00000036966, ENSDARG00000111892, ENSDARG00000114115 797 1.662 - 0.756 - - - - 0.906 - - hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase [Source:ZFIN;Acc:ZDB-GENE-030131-5673]
99. pdlim5a ENSDARG00000101777 357 1.662 - - - - - 0.767 - - 0.895 PDZ and LIM domain 5a [Source:ZFIN;Acc:ZDB-GENE-040718-401]
100. melk ENSDARG00000030759 1150 1.661 - 0.809 - - - - - - 0.852 maternal embryonic leucine zipper kinase [Source:ZFIN;Acc:ZDB-GENE-990603-5]

There are 2316 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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