Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for commd1

Gene Name Gene ID Reads Annotation
commd1 ENSDARG00000031203 340 copper metabolism (Murr1) domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060512-329]










Genes with expression patterns similar to commd1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. commd1 ENSDARG00000031203 340 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 copper metabolism (Murr1) domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060512-329]
2. ANGPT4 ENSDARG00000076787 140 2.379 0.717 0.704 - - - - - 0.958 - angiopoietin 4 [Source:ZFIN;Acc:ZDB-GENE-110104-1]
3. rwdd2b ENSDARG00000055426 294 1.86 0.888 - - - - - - 0.972 - RWD domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-041001-119]
4. HYKK HYKK 261 1.795 - - - - - - 0.830 0.965 -
5. enosf1 ENSDARG00000038359 209 1.763 - - - - - 0.788 - 0.975 - enolase superfamily member 1 [Source:ZFIN;Acc:ZDB-GENE-060929-780]
6. si:ch73-73d17.3 si:ch73-73d17.3 925 1.75 - - - - - - 0.791 0.959 -
7. nfybb ENSDARG00000045611, ENSDARG00000110926 350 1.743 0.837 - - - - - 0.906 - - nuclear transcription factor Y, beta b [Source:ZFIN;Acc:ZDB-GENE-050306-25]
8. adam9 ENSDARG00000010070 192 1.731 - - - - - - 0.824 0.907 - ADAM metallopeptidase domain 9 [Source:ZFIN;Acc:ZDB-GENE-040912-127]
9. rps6ka3b ENSDARG00000057927, ENSDARG00000109970 812 1.73 - - - - - - 0.865 0.865 - ribosomal protein S6 kinase, polypeptide 3b [Source:ZFIN;Acc:ZDB-GENE-070209-74]
10. pitpnaa ENSDARG00000039490 1096 1.712 - - - - - - 0.796 0.916 - phosphatidylinositol transfer protein, alpha a [Source:ZFIN;Acc:ZDB-GENE-040426-744]
11. rassf7a ENSDARG00000079917 162 1.707 - - - - - 0.853 0.854 - - Ras association (RalGDS/AF-6) domain family (N-terminal) member 7a [Source:ZFIN;Acc:ZDB-GENE-091013-3]
12. EPS8L2 ENSDARG00000058108 484 1.696 - - - - - 0.784 - 0.912 - EPS8 like 2 [Source:ZFIN;Acc:ZDB-GENE-131121-340]
13. gpd1c ENSDARG00000036942 869 1.68 - - - - - 0.823 0.857 - - glycerol-3-phosphate dehydrogenase 1c [Source:ZFIN;Acc:ZDB-GENE-040426-2576]
14. reep3l reep3l 608 1.669 - 0.735 - - - - - 0.934 -
15. twf1b ENSDARG00000011661 630 1.657 0.739 - - - - - 0.918 - - twinfilin actin-binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-040711-3]
16. ddx56 ENSDARG00000020913 1070 1.647 - - - - - - 0.718 0.929 - DEAD (Asp-Glu-Ala-Asp) box helicase 56 [Source:ZFIN;Acc:ZDB-GENE-040825-3]
17. creb3l3l ENSDARG00000020926, ENSDARG00000116217 1458 1.635 - 0.708 - - - - 0.927 - - cAMP responsive element binding protein 3-like 3 like [Source:ZFIN;Acc:ZDB-GENE-040426-2942]
18. CNNM2 CNNM2 225 1.63 - 0.763 - - - - 0.867 - -
19. tbc1d22a ENSDARG00000045510 363 1.622 0.807 - - - - - 0.815 - - TBC1 domain family, member 22a [Source:ZFIN;Acc:ZDB-GENE-041114-144]
20. PARP8 ENSDARG00000059789 264 1.619 0.855 - - - - 0.764 - - - poly (ADP-ribose) polymerase family, member 8 [Source:ZFIN;Acc:ZDB-GENE-060929-432]
21. casp7 ENSDARG00000091836 657 1.611 - - - - - - 0.732 0.879 - caspase 7, apoptosis-related cysteine peptidase [Source:ZFIN;Acc:ZDB-GENE-050522-506]
22. bmp3 ENSDARG00000060526, ENSDARG00000109238 54 1.611 0.826 - - - - - 0.785 - - bone morphogenetic protein 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7192]
23. plekha8 ENSDARG00000040698 431 1.605 - - - - - 0.806 0.799 - - pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 [Source:ZFIN;Acc:ZDB-GENE-041114-69]
24. ZBTB7B ENSDARG00000021891 843 1.604 - - - - - 0.752 - 0.852 - zinc finger and BTB domain containing 7B [Source:ZFIN;Acc:ZDB-GENE-040426-1134]
25. C12H10orf2 C12H10orf2 245 1.599 0.746 - - - - 0.853 - - -
26. pigl ENSDARG00000067752, ENSDARG00000116105 282 1.593 0.873 - - - - 0.720 - - - phosphatidylinositol glycan anchor biosynthesis, class L [Source:ZFIN;Acc:ZDB-GENE-050506-60]
27. PRR5 PRR5 630 1.592 - - - - - 0.850 - 0.742 -
28. si:dkey-95p16.2 ENSDARG00000093484 3413 1.592 - - - - - 0.758 0.834 - - si:dkey-95p16.2 [Source:ZFIN;Acc:ZDB-GENE-081105-65]
29. si:ch211-166e11.5 ENSDARG00000100407 576 1.588 - - - - - 0.762 0.826 - - si:ch211-166e11.5 [Source:ZFIN;Acc:ZDB-GENE-070912-142]
30. rgp1 ENSDARG00000006545 790 1.584 - - - - - - 0.709 0.875 - GP1 homolog, RAB6A GEF complex partner 1 [Source:ZFIN;Acc:ZDB-GENE-040718-352]
31. dynll2b ENSDARG00000005172 935 1.581 - 0.773 - - - - 0.808 - - dynein, light chain, LC8-type 2b [Source:ZFIN;Acc:ZDB-GENE-050320-132]
32. ssh2b ENSDARG00000098955 614 1.579 - - - - - 0.814 0.765 - - slingshot protein phosphatase 2b [Source:ZFIN;Acc:ZDB-GENE-081205-4]
33. nhej1 ENSDARG00000058893 172 1.572 0.802 0.770 - - - - - - - nonhomologous end-joining factor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2515]
34. yaf2 ENSDARG00000015966 1905 1.566 0.798 - - - - - 0.768 - - YY1 associated factor 2 [Source:ZFIN;Acc:ZDB-GENE-041210-115]
35. COX19 ENSDARG00000063882 419 1.565 - - - - - - 0.752 0.813 - cytochrome c oxidase assembly factor COX19 [Source:ZFIN;Acc:ZDB-GENE-070410-29]
36. pgm3 ENSDARG00000024654 366 1.564 0.777 - - - - - - 0.787 - phosphoglucomutase 3 [Source:ZFIN;Acc:ZDB-GENE-041024-13]
37. ak4 ENSDARG00000006546 1528 1.553 - - - - - 0.712 - 0.841 - adenylate kinase 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2505]
38. nup35 ENSDARG00000012222 1212 1.536 - - - - - 0.816 0.720 - - nucleoporin 35 [Source:ZFIN;Acc:ZDB-GENE-030131-9407]
39. lpar2b ENSDARG00000042561 1086 1.535 - - - - - 0.740 0.795 - - lysophosphatidic acid receptor 2b [Source:ZFIN;Acc:ZDB-GENE-051120-99]
40. trim71 ENSDARG00000075593 2750 1.531 - - - - - 0.780 0.751 - - tripartite motif containing 71, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-040128-1]
41. dvl3a ENSDARG00000015707 1132 1.531 0.817 - - - - 0.714 - - - dishevelled segment polarity protein 3a [Source:ZFIN;Acc:ZDB-GENE-010319-1]
42. cetn3 ENSDARG00000011825 1087 1.526 - - - - - 0.804 0.722 - - centrin 3 [Source:ZFIN;Acc:ZDB-GENE-050522-152]
43. SLC41A2 SLC41A2 202 1.522 - 0.708 - - - - - 0.814 -
44. umps ENSDARG00000012215 4564 1.514 - - - - - 0.789 - 0.725 - uridine monophosphate synthetase [Source:ZFIN;Acc:ZDB-GENE-040426-785]
45. si:dkey-153m14.1 si:dkey-153m14.1 4591 1.508 - - - - - - 0.773 0.735 -
46. dgcr2 ENSDARG00000042962, ENSDARG00000109230 2339 1.505 - 0.748 - - - - 0.757 - - DiGeorge syndrome critical region gene 2 [Source:ZFIN;Acc:ZDB-GENE-040718-404]
47. ak5l ENSDARG00000017739 1058 1.499 - - - - - - 0.758 0.741 - adenylate kinase 5, like [Source:ZFIN;Acc:ZDB-GENE-050410-2]
48. mmadhc ENSDARG00000005870 1298 1.497 - - - - - 0.779 - 0.718 - methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria [Source:ZFIN;Acc:ZDB-GENE-040704-50]
49. u2af2a ENSDARG00000012505 2920 1.496 - 0.706 - - - - 0.790 - - U2 small nuclear RNA auxiliary factor 2a [Source:ZFIN;Acc:ZDB-GENE-050706-131]
50. mettl2a ENSDARG00000008105, ENSDARG00000113100 1036 1.494 - - - - - - 0.750 0.744 - methyltransferase like 2A [Source:ZFIN;Acc:ZDB-GENE-050417-462]
51. nr1i2 ENSDARG00000029766 458 1.488 - 0.780 - - - 0.708 - - - nuclear receptor subfamily 1, group I, member 2 [Source:ZFIN;Acc:ZDB-GENE-030903-3]
52. bod1 ENSDARG00000103922 1126 1.478 0.730 - - - - - - 0.748 - biorientation of chromosomes in cell division 1 [Source:ZFIN;Acc:ZDB-GENE-060810-163]
53. rab9a ENSDARG00000045027 201 1.472 0.700 - - - - - 0.772 - - RAB9A, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-060825-293]
54. si:dkey-43f9.4 si:dkey-43f9.4 180 1.47 0.718 - - - - - 0.752 - -
55. fgf8a ENSDARG00000003399 580 1.448 - - - - - 0.707 0.741 - - fibroblast growth factor 8a [Source:ZFIN;Acc:ZDB-GENE-990415-72]
56. pex5la ENSDARG00000022518, ENSDARG00000109971, ENSDARG00000110029, ENSDARG00000112628 28 0.985 - - - - - - - 0.985 - peroxisomal biogenesis factor 5-like a [Source:ZFIN;Acc:ZDB-GENE-070705-298]
57. pde6b ENSDARG00000011671 44 0.985 - - - - - - - 0.985 - phosphodiesterase 6B, cGMP-specific, rod, beta [Source:ZFIN;Acc:ZDB-GENE-090421-2]
58. GDPD4_1 GDPD4_1 190 0.985 - - - - - - - 0.985 -
59. si:dkey-100h21.2 si:dkey-100h21.2 30 0.985 - - - - - - - 0.985 -
60. adcyap1a ENSDARG00000004015 67 0.985 - - - - - - - 0.985 - adenylate cyclase activating polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-020809-4]
61. si:ch73-167f18.3 si:ch73-167f18.3 78 0.985 - - - - - - - 0.985 -
62. POLQ ENSDARG00000044622, ENSDARG00000110374 94 0.984 - - - - - - - 0.984 - polymerase (DNA directed), theta [Source:ZFIN;Acc:ZDB-GENE-040724-232]
63. IKZF4 ENSDARG00000037068 36 0.984 - - - - - - - 0.984 - IKAROS family zinc finger 4 [Source:ZFIN;Acc:ZDB-GENE-180319-1]
64. jam3a ENSDARG00000114589 630 0.984 - - - - - - - 0.984 - junctional adhesion molecule 3a [Source:ZFIN;Acc:ZDB-GENE-070424-177]
65. spef2 ENSDARG00000098330 59 0.984 - - - - - - - 0.984 - sperm flagellar 2 [Source:ZFIN;Acc:ZDB-GENE-060526-47]
66. mir130b 180 0.984 - - - - - - - 0.984 - microRNA 130b
67. si:dkey-157e10.7 si:dkey-157e10.7 105 0.983 - - - - - - - 0.983 -
68. VDAC3 ENSDARG00000003695 34 0.983 - - - - - - - 0.983 - voltage-dependent anion channel 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2380]
69. prkag3b ENSDARG00000000369 1945 0.983 - - - - - - - 0.983 - protein kinase, AMP-activated, gamma 3b non-catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-060421-6938]
70. b3galtla b3galtla 111 0.983 - - - - - - - 0.983 -
71. mea1 ENSDARG00000039820 589 0.983 - - - - - - - 0.983 - male-enhanced antigen 1 [Source:ZFIN;Acc:ZDB-GENE-070424-117]
72. TFPT ENSDARG00000089572, ENSDARG00000111694 112 0.982 - - - - - - - 0.982 - TCF3 (E2A) fusion partner [Source:ZFIN;Acc:ZDB-GENE-140106-241]
73. pus7 ENSDARG00000031774 195 0.982 - - - - - - - 0.982 - pseudouridylate synthase 7 [Source:ZFIN;Acc:ZDB-GENE-060620-1]
74. hoxa4a 37 0.981 - - - - - - - 0.981 - homeobox A4a, transcript variant X4
75. MAP7 MAP7 98 0.981 - - - - - - - 0.981 -
76. slc6a6a ENSDARG00000012534 183 0.981 - - - - - - - 0.981 - solute carrier family 6 (neurotransmitter transporter), member 6a [Source:ZFIN;Acc:ZDB-GENE-081104-1]
77. BX511021.1 ENSDARG00000073936 647 0.981 - - - - - - - 0.981 - ferritin, middle subunit-like [Source:NCBI gene;Acc:100006428]
78. ankdd1b ENSDARG00000025866 51 0.981 - - - - - - - 0.981 - ankyrin repeat and death domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-060526-136]
79. TTF1_4 TTF1_4 504 0.98 - - - - - - - 0.980 -
80. ly75 ENSDARG00000053113 196 0.98 - - - - - - - 0.980 - lymphocyte antigen 75 [Source:ZFIN;Acc:ZDB-GENE-050309-166]
81. si:ch211-283g2.2 ENSDARG00000108340, ENSDARG00000108953 59 0.979 - - - - - - - 0.979 - si:ch211-283g2.2 [Source:ZFIN;Acc:ZDB-GENE-060526-151]
82. CABZ01045230.1 CABZ01045230.1 158 0.979 - - - - - - - 0.979 -
83. KBTBD13_1 KBTBD13_1 116 0.979 - - - - - - - 0.979 -
84. rpgra ENSDARG00000056617 77 0.979 - - - - - - - 0.979 - retinitis pigmentosa GTPase regulator a [Source:ZFIN;Acc:ZDB-GENE-070912-423]
85. hn1a hn1a 115 0.977 - - - - - - - 0.977 -
86. zgc:174877 ENSDARG00000079278 143 0.976 - - - - - - - 0.976 - zgc:174877 [Source:ZFIN;Acc:ZDB-GENE-041008-66]
87. si:dkey-17e6.2 si:dkey-17e6.2 72 0.976 - - - - - - - 0.976 -
88. tarsl2 ENSDARG00000092774 505 0.976 - - - - - - - 0.976 - threonyl-tRNA synthetase-like 2 [Source:ZFIN;Acc:ZDB-GENE-081104-490]
89. BX005410.2 BX005410.2 44 0.975 - - - - - - - 0.975 -
90. CIT CIT 212 0.974 - - - - - - - 0.974 -
91. zgc:174688 zgc:174688 170 0.974 - - - - - - - 0.974 -
92. pard3 pard3 161 0.974 - - - - - - - 0.974 -
93. pars2 ENSDARG00000044404, ENSDARG00000109425 271 0.973 - - - - - - - 0.973 - prolyl-tRNA synthetase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-030131-4219]
94. nrxn2b ENSDARG00000063150 343 0.973 - - - - - - - 0.973 - neurexin 2b [Source:ZFIN;Acc:ZDB-GENE-070206-7]
95. smarcd2 ENSDARG00000088877 416 0.972 - - - - - - - 0.972 - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 [Source:ZFIN;Acc:ZDB-GENE-080215-1]
96. SHANK1 ENSDARG00000060539 102 0.972 - - - - - - - 0.972 - SH3 and multiple ankyrin repeat domains 1 [Source:ZFIN;Acc:ZDB-GENE-130530-691]
97. CR381544.1 ENSDARG00000088187 821 0.969 - - - - - - - 0.969 -
98. aatkb ENSDARG00000104442 392 0.969 - - - - - - - 0.969 - apoptosis-associated tyrosine kinase b [Source:ZFIN;Acc:ZDB-GENE-100812-6]
99. camk2d1 ENSDARG00000043010 669 0.968 - - - - - - - 0.968 - calcium/calmodulin-dependent protein kinase (CaM kinase) II delta 1 [Source:ZFIN;Acc:ZDB-GENE-040801-121]
100. pdlim3b ENSDARG00000014248, ENSDARG00000111275 708 0.968 - - - - - - - 0.968 - PDZ and LIM domain 3b [Source:ZFIN;Acc:ZDB-GENE-060130-104]

There are 1425 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA