Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for col5a3a

Gene Name Gene ID Reads Annotation
col5a3a ENSDARG00000098294 1004 collagen, type V, alpha 3a [Source:ZFIN;Acc:ZDB-GENE-030131-968]










Genes with expression patterns similar to col5a3a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. col5a3a ENSDARG00000098294 1004 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 collagen, type V, alpha 3a [Source:ZFIN;Acc:ZDB-GENE-030131-968]
2. MDC1 ENSDARG00000086764 1851 1.723 0.780 - - - 0.943 - - - - mediator of DNA damage checkpoint 1 [Source:ZFIN;Acc:ZDB-GENE-060810-185]
3. fbxl5 ENSDARG00000043046 1403 1.694 - - - 0.775 0.919 - - - - F-box and leucine-rich repeat protein 5 [Source:ZFIN;Acc:ZDB-GENE-030131-900]
4. pwp2h ENSDARG00000037109 1395 1.669 - - - - 0.914 - 0.755 - - PWP2 periodic tryptophan protein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-021031-3]
5. hoxc4a ENSDARG00000070338 1382 1.63 0.701 - - - 0.929 - - - - homeobox C4a [Source:ZFIN;Acc:ZDB-GENE-990415-112]
6. CBFA2T3 ENSDARG00000079012 6799 1.483 - 0.716 - - 0.767 - - - - core-binding factor, runt domain, alpha subunit 2; translocated to, 3 [Source:ZFIN;Acc:ZDB-GENE-070209-2]
7. megf8_1 ENSDARG00000079751, ENSDARG00000103934 722 1.482 - 0.764 - - - 0.718 - - - multiple EGF-like-domains 8 [Source:ZFIN;Acc:ZDB-GENE-090730-1]
8. cln8 ENSDARG00000075525, ENSDARG00000113042 601 1.475 - - - - - 0.739 0.736 - - CLN8, transmembrane ER and ERGIC protein [Source:ZFIN;Acc:ZDB-GENE-060906-3]
9. palm1a ENSDARG00000026882, ENSDARG00000115356 3425 1.457 0.756 - - - - - 0.701 - - paralemmin 1a [Source:ZFIN;Acc:ZDB-GENE-050417-409]
10. mn1b ENSDARG00000079248 882 1.432 - 0.705 - - - - 0.727 - - meningioma 1b [Source:ZFIN;Acc:ZDB-GENE-080917-23]
11. tuft1b ENSDARG00000071010 909 0.966 - - - - 0.966 - - - - tuftelin 1b [Source:ZFIN;Acc:ZDB-GENE-060503-150]
12. znf143a ENSDARG00000012887 1393 0.959 - - - - 0.959 - - - - zinc finger protein 143a [Source:ZFIN;Acc:ZDB-GENE-041114-154]
13. bnc2 ENSDARG00000069989 757 0.959 - - - - 0.959 - - - - basonuclin 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5784]
14. zcchc17 ENSDARG00000018936 1577 0.956 - - - - 0.956 - - - - zinc finger, CCHC domain containing 17 [Source:ZFIN;Acc:ZDB-GENE-040325-2]
15. gsto2 ENSDARG00000033285 583 0.955 - - - - 0.955 - - - - glutathione S-transferase omega 2 [Source:ZFIN;Acc:ZDB-GENE-041114-67]
16. ccnb1 ENSDARG00000051923 3226 0.955 - - - - 0.955 - - - - cyclin B1 [Source:ZFIN;Acc:ZDB-GENE-000406-10]
17. lrrfip2 ENSDARG00000010400 2633 0.955 - - - - 0.955 - - - - leucine rich repeat (in FLII) interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7781]
18. pole3 ENSDARG00000008551, ENSDARG00000111677, ENSDARG00000114995 485 0.955 - - - - 0.955 - - - - polymerase (DNA directed), epsilon 3 (p17 subunit) [Source:ZFIN;Acc:ZDB-GENE-040426-1773]
19. cdc14ab ENSDARG00000057016 1016 0.954 - - - - 0.954 - - - - cell division cycle 14Ab [Source:ZFIN;Acc:ZDB-GENE-070705-309]
20. frem1b ENSDARG00000062402 750 0.954 - - - - 0.954 - - - - Fras1 related extracellular matrix 1b [Source:ZFIN;Acc:ZDB-GENE-050208-783]
21. CASKIN2_1 CASKIN2_1 2299 0.954 - - - - 0.954 - - - -
22. myo9al1 myo9al1 1194 0.953 - - - - 0.953 - - - -
23. CHD6 ENSDARG00000017244 219 0.953 - - - - 0.953 - - - - chromodomain helicase DNA binding protein 6 [Source:ZFIN;Acc:ZDB-GENE-130530-559]
24. adi1 ENSDARG00000020448 1402 0.952 - - - - 0.952 - - - - acireductone dioxygenase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2799]
25. paqr3b ENSDARG00000044253, ENSDARG00000110049 381 0.952 - - - - 0.952 - - - - progestin and adipoQ receptor family member IIIb [Source:ZFIN;Acc:ZDB-GENE-050913-128]
26. BX548000.3 BX548000.3 241 0.952 - - - - 0.952 - - - -
27. sepsecs ENSDARG00000033861 478 0.952 - - - - 0.952 - - - - Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase [Source:ZFIN;Acc:ZDB-GENE-040426-859]
28. CR933820.2 CR933820.2 152 0.951 - - - - 0.951 - - - -
29. rassf10a 417 0.951 - - - - 0.951 - - - - Ras association (RalGDS/AF-6) domain family (N-terminal) member 10a
30. tmem62 ENSDARG00000053890 1233 0.951 - - - - 0.951 - - - - transmembrane protein 62 [Source:ZFIN;Acc:ZDB-GENE-040426-1837]
31. si:ch211-282k23.2 ENSDARG00000093591 447 0.951 - - - - 0.951 - - - - si:ch211-282k23.2 [Source:ZFIN;Acc:ZDB-GENE-050420-314]
32. utp3 ENSDARG00000056720 922 0.951 - - - - 0.951 - - - - UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040912-163]
33. C8H1orf174 C8H1orf174 372 0.951 - - - - 0.951 - - - -
34. aldh18a1 ENSDARG00000099579 2185 0.951 - - - - 0.951 - - - - aldehyde dehydrogenase 18 family, member A1 [Source:ZFIN;Acc:ZDB-GENE-030131-5602]
35. tbx19 ENSDARG00000079187 133 0.951 - - - - 0.951 - - - - T-box 19 [Source:ZFIN;Acc:ZDB-GENE-110411-5]
36. tmem135 ENSDARG00000069157 918 0.951 - - - - 0.951 - - - - transmembrane protein 135 [Source:ZFIN;Acc:ZDB-GENE-070424-70]
37. alpl ENSDARG00000015546 334 0.951 - - - - 0.951 - - - - alkaline phosphatase, liver/bone/kidney [Source:ZFIN;Acc:ZDB-GENE-040420-1]
38. Mar-01 Mar-01 176 0.951 - - - - 0.951 - - - -
39. zgc:171759_5 ENSDARG00000100259, ENSDARG00000109737, ENSDARG00000111964, ENSDARG00000114195, ENSDARG00000115938 274 0.95 - - - - 0.950 - - - - zgc:171759 [Source:ZFIN;Acc:ZDB-GENE-071004-32]
40. wfikkn2a ENSDARG00000013460 859 0.95 - - - - 0.950 - - - - info WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-120914-1]
41. fam129ba ENSDARG00000062970 1578 0.95 - - - - 0.950 - - - - family with sequence similarity 129, member Ba [Source:ZFIN;Acc:ZDB-GENE-070112-1222]
42. KIF1A KIF1A 1686 0.95 - - - - 0.950 - - - -
43. gcfc2 ENSDARG00000079020 479 0.949 - - - - 0.949 - - - - GC-rich sequence DNA-binding factor 2 [Source:ZFIN;Acc:ZDB-GENE-080204-19]
44. arhgef1b ENSDARG00000055837 2330 0.949 - - - - 0.949 - - - - Rho guanine nucleotide exchange factor (GEF) 1b [Source:ZFIN;Acc:ZDB-GENE-060616-136]
45. dusp11 ENSDARG00000038156 2490 0.949 - - - - 0.949 - - - - dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) [Source:ZFIN;Acc:ZDB-GENE-050417-226]
46. pdcd2l ENSDARG00000002754 417 0.949 - - - - 0.949 - - - - programmed cell death 2-like [Source:ZFIN;Acc:ZDB-GENE-040426-967]
47. slc39a13 ENSDARG00000000442 1367 0.949 - - - - 0.949 - - - - solute carrier family 39 (zinc transporter), member 13 [Source:ZFIN;Acc:ZDB-GENE-030616-17]
48. smurf2 ENSDARG00000038067 2057 0.949 - - - - 0.949 - - - - SMAD specific E3 ubiquitin protein ligase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1830]
49. farp1 ENSDARG00000074381 406 0.949 - - - - 0.949 - - - - FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) [Source:ZFIN;Acc:ZDB-GENE-070424-163]
50. aatkb ENSDARG00000104442 392 0.949 - - - - 0.949 - - - - apoptosis-associated tyrosine kinase b [Source:ZFIN;Acc:ZDB-GENE-100812-6]
51. espn ENSDARG00000076414 343 0.949 - - - - 0.949 - - - - espin [Source:ZFIN;Acc:ZDB-GENE-081105-173]
52. minpp1a ENSDARG00000057058, ENSDARG00000110567, ENSDARG00000116432 496 0.949 - - - - 0.949 - - - - multiple inositol-polyphosphate phosphatase 1a [Source:ZFIN;Acc:ZDB-GENE-060929-1194]
53. tpcn1 ENSDARG00000062362 563 0.949 - - - - 0.949 - - - - two pore segment channel 1 [Source:ZFIN;Acc:ZDB-GENE-060526-199]
54. cnpy1 ENSDARG00000003757 1132 0.949 - - - - 0.949 - - - - canopy FGF signaling regulator 1 [Source:ZFIN;Acc:ZDB-GENE-060315-3]
55. brd7 ENSDARG00000008380 3654 0.949 - - - - 0.949 - - - - bromodomain containing 7 [Source:ZFIN;Acc:ZDB-GENE-040426-2687]
56. ikbkb ENSDARG00000079123 498 0.949 - - - - 0.949 - - - - inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta [Source:ZFIN;Acc:ZDB-GENE-071115-2]
57. ctnnd2b ENSDARG00000003779 964 0.949 - - - - 0.949 - - - - catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
58. sh3bp5lb 1090 0.948 - - - - 0.948 - - - - SH3-binding domain protein 5-like, b
59. gpr161 ENSDARG00000055659 454 0.948 - - - - 0.948 - - - - G protein-coupled receptor 161 [Source:ZFIN;Acc:ZDB-GENE-030616-58]
60. slc38a4 ENSDARG00000018149 2344 0.948 - - - - 0.948 - - - - solute carrier family 38, member 4 [Source:ZFIN;Acc:ZDB-GENE-041010-14]
61. nol8 ENSDARG00000044143 425 0.948 - - - - 0.948 - - - - nucleolar protein 8 [Source:ZFIN;Acc:ZDB-GENE-050208-491]
62. si:dkey-19e4.5 ENSDARG00000089886 2562 0.948 - - - - 0.948 - - - - si:dkey-19e4.5 [Source:ZFIN;Acc:ZDB-GENE-030131-1852]
63. PACS1 PACS1 2061 0.948 - - - - 0.948 - - - -
64. anapc1 ENSDARG00000075687 488 0.948 - - - - 0.948 - - - - anaphase promoting complex subunit 1 [Source:ZFIN;Acc:ZDB-GENE-081107-12]
65. COLGALT1 ENSDARG00000073974 5069 0.947 - - - - 0.947 - - - - collagen beta(1-O)galactosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-070720-6]
66. setd8a 2549 0.947 - - - - 0.947 - - - - SET domain containing (lysine methyltransferase) 8a
67. C1H3orf70 C1H3orf70 634 0.947 - - - - 0.947 - - - -
68. pcdh18a ENSDARG00000089805 1096 0.947 - - - - 0.947 - - - - protocadherin 18a [Source:ZFIN;Acc:ZDB-GENE-000607-1]
69. rcn1 ENSDARG00000070006 8455 0.947 - - - - 0.947 - - - - reticulocalbin 1, EF-hand calcium binding domain [Source:ZFIN;Acc:ZDB-GENE-080225-33]
70. znf362 znf362 869 0.946 - - - - 0.946 - - - -
71. usf2 ENSDARG00000020228 2667 0.946 - - - - 0.946 - - - - upstream transcription factor 2, c-fos interacting [Source:ZFIN;Acc:ZDB-GENE-030131-8475]
72. mboat2a ENSDARG00000031845 1255 0.946 - - - - 0.946 - - - - membrane bound O-acyltransferase domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-041210-257]
73. esrrb ENSDARG00000100847 636 0.946 - - - - 0.946 - - - - estrogen-related receptor beta [Source:ZFIN;Acc:ZDB-GENE-040616-2]
74. rtfdc1 1792 0.945 - - - - 0.945 - - - - replication termination factor 2 domain containing 1, transcript variant X2
75. alg5 ENSDARG00000021938, ENSDARG00000061235 2279 0.945 - - - - 0.945 - - - - asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase) [Source:ZFIN;Acc:ZDB-GENE-030131-6586]
76. ppp1cc 2361 0.945 - - - - 0.945 - - - - protein phosphatase 1, catalytic subunit, gamma isozyme
77. taf11 ENSDARG00000037855 2624 0.945 - - - - 0.945 - - - - TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-040718-283]
78. invs ENSDARG00000002213 261 0.945 - - - - 0.945 - - - - inversin [Source:ZFIN;Acc:ZDB-GENE-020507-2]
79. cdan1 ENSDARG00000042261 658 0.945 - - - - 0.945 - - - - codanin 1 [Source:ZFIN;Acc:ZDB-GENE-110411-280]
80. MTA1 ENSDARG00000007198 731 0.945 - - - - 0.945 - - - - metastasis associated 1 [Source:ZFIN;Acc:ZDB-GENE-131121-353]
81. gas5 279 0.945 - - - - 0.945 - - - - growth arrest-specific 5, transcript variant X4
82. gon4l ENSDARG00000005867 982 0.945 - - - - 0.945 - - - - gon-4-like (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-070117-2447]
83. ddx49 ENSDARG00000012899 1604 0.945 - - - - 0.945 - - - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Source:ZFIN;Acc:ZDB-GENE-031030-3]
84. kat2a ENSDARG00000104734 802 0.944 - - - - 0.944 - - - - K(lysine) acetyltransferase 2A [Source:ZFIN;Acc:ZDB-GENE-080403-11]
85. sde2 ENSDARG00000024124, ENSDARG00000109881 2342 0.944 - - - - 0.944 - - - - SDE2 telomere maintenance homolog (S. pombe) [Source:ZFIN;Acc:ZDB-GENE-050417-270]
86. lysmd2 ENSDARG00000091771, ENSDARG00000112692 1102 0.944 - - - - 0.944 - - - - LysM, putative peptidoglycan-binding, domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040801-250]
87. mettl16 ENSDARG00000055838 818 0.944 - - - - 0.944 - - - - methyltransferase like 16 [Source:ZFIN;Acc:ZDB-GENE-040801-130]
88. btr12 ENSDARG00000051809 1804 0.944 - - - - 0.944 - - - - bloodthirsty-related gene family, member 12 [Source:ZFIN;Acc:ZDB-GENE-060929-548]
89. her4.3 ENSDARG00000070770 613 0.944 - - - - 0.944 - - - - hairy-related 4, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-081030-7]
90. mbd1 mbd1 1309 0.943 - - - - 0.943 - - - -
91. wif1 ENSDARG00000005541 1689 0.943 - - - - 0.943 - - - - wnt inhibitory factor 1 [Source:ZFIN;Acc:ZDB-GENE-990712-17]
92. unc5b ENSDARG00000033327 3432 0.943 - - - - 0.943 - - - - unc-5 netrin receptor B [Source:ZFIN;Acc:ZDB-GENE-041213-1]
93. il1rapl1a ENSDARG00000062045, ENSDARG00000115285 1200 0.942 - - - - 0.942 - - - - interleukin 1 receptor accessory protein-like 1a [Source:ZFIN;Acc:ZDB-GENE-061013-249]
94. rybpa ENSDARG00000037773 904 0.942 - - - - 0.942 - - - - RING1 and YY1 binding protein a [Source:ZFIN;Acc:ZDB-GENE-030424-3]
95. gpr98 gpr98 717 0.942 - - - - 0.942 - - - -
96. eif2d ENSDARG00000012929 2624 0.941 - - - - 0.941 - - - - eukaryotic translation initiation factor 2D [Source:ZFIN;Acc:ZDB-GENE-040426-1226]
97. azi1 azi1 507 0.941 - - - - 0.941 - - - -
98. ncaph2 ENSDARG00000033757 1042 0.941 - - - - 0.941 - - - - non-SMC condensin II complex, subunit H2 [Source:ZFIN;Acc:ZDB-GENE-041210-172]
99. lztfl1 ENSDARG00000105010 1697 0.941 - - - - 0.941 - - - - leucine zipper transcription factor-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-945]
100. rnft1 ENSDARG00000015917, ENSDARG00000116783 1197 0.941 - - - - 0.941 - - - - ring finger protein, transmembrane 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2324]

There are 476 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA