Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for col1a1b

Gene Name Gene ID Reads Annotation
col1a1b ENSDARG00000035809 88057 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]










Genes with expression patterns similar to col1a1b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. col1a1b ENSDARG00000035809 88057 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
2. col4a5 ENSDARG00000052063 19251 1.654 - - - - - - - 0.709 0.945 collagen, type IV, alpha 5 (Alport syndrome) [Source:ZFIN;Acc:ZDB-GENE-030131-2281]
3. cfl1 ENSDARG00000021124 78399 1.653 0.755 - - - - - - - 0.898 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
4. hspd1 ENSDARG00000056160 13690 1.552 0.770 - - 0.782 - - - - - heat shock 60 protein 1 [Source:ZFIN;Acc:ZDB-GENE-021206-1]
5. col11a1a ENSDARG00000026165, ENSDARG00000115341 43138 1.551 - - - 0.849 0.702 - - - - collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
6. eif3ba ENSDARG00000059654 22960 1.542 0.752 0.790 - - - - - - - eukaryotic translation initiation factor 3, subunit Ba [Source:ZFIN;Acc:ZDB-GENE-030131-2748]
7. tnni2b.1 ENSDARG00000035958 51597 1.526 - - 0.733 - 0.793 - - - - troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
8. mef2ca ENSDARG00000029764 18547 1.509 - - - 0.806 0.703 - - - - myocyte enhancer factor 2ca [Source:ZFIN;Acc:ZDB-GENE-980526-253]
9. col5a1 ENSDARG00000012593 24177 1.501 0.800 - 0.701 - - - - - - procollagen, type V, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-041105-6]
10. desma ENSDARG00000058656 30292 1.437 - - 0.729 - 0.708 - - - - desmin a [Source:ZFIN;Acc:ZDB-GENE-980526-221]
11. pvalb4 ENSDARG00000024433 35736 0.951 - - - - - - - - 0.951 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
12. gars ENSDARG00000059070 17015 0.948 - - - - - - - - 0.948 glycyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9174]
13. COX5B_1 ENSDARG00000015978 57225 0.944 - - - - - - - - 0.944 cytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]
14. flna ENSDARG00000074201 26242 0.939 - - - - - - - - 0.939 filamin A, alpha (actin binding protein 280) [Source:ZFIN;Acc:ZDB-GENE-030131-2145]
15. tmed10 ENSDARG00000041391, ENSDARG00000110672 23599 0.938 - - - - - - - - 0.938 transmembrane p24 trafficking protein 10 [Source:ZFIN;Acc:ZDB-GENE-030131-4915]
16. TMEM261 TMEM261 6529 0.937 - - - - - - - - 0.937
17. prickle1b ENSDARG00000045694 7536 0.937 - - - - - - - - 0.937 prickle homolog 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2152]
18. CU856140.1 CU856140.1 4316 0.936 - - - - - - - - 0.936
19. thumpd3 ENSDARG00000059634, ENSDARG00000113066 7065 0.936 - - - - - - - - 0.936 THUMP domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9745]
20. ube2ka ENSDARG00000089055 5300 0.936 - - - - - - - - 0.936 ubiquitin-conjugating enzyme E2Ka (UBC1 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-050320-48]
21. bap1 ENSDARG00000063051 4973 0.936 - - - - - - - - 0.936 BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) [Source:ZFIN;Acc:ZDB-GENE-050208-492]
22. socs5a ENSDARG00000100717 6927 0.935 - - - - - - - - 0.935 suppressor of cytokine signaling 5a [Source:ZFIN;Acc:ZDB-GENE-061013-408]
23. nupr1 6040 0.935 - - - - - - - - 0.935 nuclear protein 1
24. notch1b ENSDARG00000052094 7874 0.935 - - - - - - - - 0.935 notch 1b [Source:ZFIN;Acc:ZDB-GENE-990415-183]
25. vdac2 ENSDARG00000013623 37765 0.929 - 0.929 - - - - - - - voltage-dependent anion channel 2 [Source:ZFIN;Acc:ZDB-GENE-030131-845]
26. rpl18a ENSDARG00000025073 170983 0.908 - - - - - - - - 0.908 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
27. hp1bp3 ENSDARG00000044669 23708 0.876 - 0.876 - - - - - - - heterochromatin protein 1, binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-060810-79]
28. rpl17 ENSDARG00000057556 60281 0.863 - - - 0.863 - - - - - ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
29. CABZ01007794.1 CABZ01007794.1 14290 0.848 - - - 0.848 - - - - -
30. anxa1c ENSDARG00000104359 23181 0.833 - - - 0.833 - - - - - annexin A1c [Source:ZFIN;Acc:ZDB-GENE-030131-5274]
31. cd164 ENSDARG00000013628 21750 0.832 - - - 0.832 - - - - - CD164 molecule, sialomucin [Source:ZFIN;Acc:ZDB-GENE-030131-1598]
32. ndufb4 ENSDARG00000019332, ENSDARG00000110786, ENSDARG00000113951 11340 0.831 - - - 0.831 - - - - - NADH:ubiquinone oxidoreductase subunit B4 [Source:ZFIN;Acc:ZDB-GENE-040426-1973]
33. ppiaa ENSDARG00000009212 290634 0.827 - - - - - - - - 0.827 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
34. hdlbp hdlbp 41842 0.825 - - - 0.825 - - - - -
35. atp5g3b 69028 0.825 - - - - - - 0.825 - - ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
36. si:dkeyp-113d7.4 si:dkeyp-113d7.4 33767 0.816 - - - 0.816 - - - - -
37. ndufv1 ENSDARG00000036438 8437 0.814 - - - 0.814 - - - - - NADH:ubiquinone oxidoreductase core subunit V1 [Source:ZFIN;Acc:ZDB-GENE-040808-73]
38. lama2 ENSDARG00000099390 24734 0.811 - 0.811 - - - - - - - laminin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-060119-1]
39. mt-nd5 ENSDARG00000063921 21268 0.81 - - - 0.810 - - - - - NADH dehydrogenase 5, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-12]
40. rac1 rac1 7341 0.809 - - - 0.809 - - - - -
41. sdhdb ENSDARG00000030139 9761 0.808 - - - 0.808 - - - - - succinate dehydrogenase complex, subunit D, integral membrane protein b [Source:ZFIN;Acc:ZDB-GENE-040822-17]
42. calrl calrl 16799 0.807 - - - 0.807 - - - - -
43. prelid1a ENSDARG00000098671 4745 0.806 - - - 0.806 - - - - - PRELI domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1341]
44. ndrg2 ENSDARG00000011170 11442 0.806 - - - 0.806 - - - - - NDRG family member 2 [Source:ZFIN;Acc:ZDB-GENE-041212-15]
45. tecrb ENSDARG00000025904 4612 0.805 - - - 0.805 - - - - - trans-2,3-enoyl-CoA reductase b [Source:ZFIN;Acc:ZDB-GENE-030131-5154]
46. arf6b ENSDARG00000052928 4585 0.802 - - - 0.802 - - - - - ADP-ribosylation factor 6b [Source:ZFIN;Acc:ZDB-GENE-030131-9056]
47. lpp ENSDARG00000023578 3581 0.8 - - - 0.800 - - - - - LIM domain containing preferred translocation partner in lipoma [Source:ZFIN;Acc:ZDB-GENE-040426-918]
48. gnpda2 ENSDARG00000024443 6637 0.799 - - - 0.799 - - - - - glucosamine-6-phosphate deaminase 2 [Source:ZFIN;Acc:ZDB-GENE-091117-41]
49. CU633999.1 ENSDARG00000098197 2880 0.798 - - - 0.798 - - - - -
50. ost4 ENSDARG00000096118 7679 0.797 - - - 0.797 - - - - - oligosaccharyltransferase complex subunit 4 (non-catalytic) [Source:ZFIN;Acc:ZDB-GENE-110307-1]
51. bcar1 ENSDARG00000056525 6563 0.796 - - - 0.796 - - - - - BCAR1, Cas family scaffold protein [Source:ZFIN;Acc:ZDB-GENE-030131-2774]
52. lrpprc ENSDARG00000043970 3847 0.794 - - - 0.794 - - - - - leucine-rich pentatricopeptide repeat containing [Source:ZFIN;Acc:ZDB-GENE-030131-7887]
53. hopx ENSDARG00000089368 2342 0.794 - - - 0.794 - - - - - HOP homeobox [Source:ZFIN;Acc:ZDB-GENE-031016-2]
54. chmp2bb ENSDARG00000002190 4629 0.794 - - - 0.794 - - - - - charged multivesicular body protein 2Bb [Source:ZFIN;Acc:ZDB-GENE-040426-2539]
55. serp1 ENSDARG00000099439 23682 0.794 - - - 0.794 - - - - - stress-associated endoplasmic reticulum protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8741]
56. slc1a5 ENSDARG00000099186 7580 0.793 - - - 0.793 - - - - - solute carrier family 1 (neutral amino acid transporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-070501-4]
57. ola1 ENSDARG00000044565 22424 0.793 - - - 0.793 - - - - - Obg-like ATPase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5063]
58. DUSP28 ENSDARG00000059695 1135 0.792 - - - 0.792 - - - - - dual specificity phosphatase 28 [Source:ZFIN;Acc:ZDB-GENE-131127-257]
59. meis1 meis1 6937 0.792 - - - 0.792 - - - - -
60. pcca ENSDARG00000028982, ENSDARG00000110281 3212 0.791 - - - 0.791 - - - - - propionyl-CoA carboxylase subunit alpha [Source:ZFIN;Acc:ZDB-GENE-040718-246]
61. atp2b3b ENSDARG00000023445 1424 0.791 - - - 0.791 - - - - - ATPase plasma membrane Ca2+ transporting 3b [Source:ZFIN;Acc:ZDB-GENE-080409-2]
62. rpl19 ENSDARG00000013307 122192 0.791 - - - - - - 0.791 - - ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
63. aldh4a1 ENSDARG00000038207 4639 0.79 - - - 0.790 - - - - - aldehyde dehydrogenase 4 family, member A1 [Source:ZFIN;Acc:ZDB-GENE-040426-1179]
64. timm50 ENSDARG00000031098, ENSDARG00000109900 988 0.79 - - - 0.790 - - - - - translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040426-1618]
65. slc24a4a ENSDARG00000015425 1464 0.79 - - - 0.790 - - - - - solute carrier family 24 (sodium/potassium/calcium exchanger), member 4a [Source:ZFIN;Acc:ZDB-GENE-050417-291]
66. tpm3 ENSDARG00000005162 86049 0.789 - - - - 0.789 - - - - tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
67. KRT23 KRT23 1443 0.789 - - - 0.789 - - - - -
68. bet1 ENSDARG00000034885, ENSDARG00000113480 3627 0.789 - - - 0.789 - - - - - Bet1 golgi vesicular membrane trafficking protein [Source:ZFIN;Acc:ZDB-GENE-040625-3]
69. stip1 ENSDARG00000004906 7742 0.789 - - - 0.789 - - - - - stress-induced phosphoprotein 1 [Source:ZFIN;Acc:ZDB-GENE-041121-17]
70. dip2ba ENSDARG00000005350, ENSDARG00000111011, ENSDARG00000111214 1640 0.789 - - - 0.789 - - - - - disco-interacting protein 2 homolog Ba [Source:ZFIN;Acc:ZDB-GENE-040426-2305]
71. si:ch211-152p11.4 ENSDARG00000079705 2341 0.788 - - - 0.788 - - - - - si:ch211-152p11.4 [Source:ZFIN;Acc:ZDB-GENE-060503-764]
72. aamp ENSDARG00000045019 2818 0.788 - - - 0.788 - - - - - angio-associated, migratory cell protein [Source:ZFIN;Acc:ZDB-GENE-040426-2370]
73. rab22a ENSDARG00000015807, ENSDARG00000114826 1627 0.788 - - - 0.788 - - - - - RAB22A, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-041114-161]
74. anapc16 ENSDARG00000013822 5857 0.788 - - - 0.788 - - - - - anaphase promoting complex subunit 16 [Source:ZFIN;Acc:ZDB-GENE-050417-430]
75. hrsp12 3981 0.788 - - - 0.788 - - - - - heat-responsive protein 12, transcript variant 1
76. FRMPD1_1 FRMPD1_1 1589 0.788 - - - 0.788 - - - - -
77. zfand5b ENSDARG00000002271 4145 0.788 - - - 0.788 - - - - - zinc finger, AN1-type domain 5b [Source:ZFIN;Acc:ZDB-GENE-040426-875]
78. chtopa ENSDARG00000057234 3287 0.787 - - - 0.787 - - - - - chromatin target of PRMT1a [Source:ZFIN;Acc:ZDB-GENE-030131-210]
79. ephb4b ENSDARG00000027112 633 0.787 - - - 0.787 - - - - - eph receptor B4b [Source:ZFIN;Acc:ZDB-GENE-990415-65]
80. snd1 ENSDARG00000006766 12906 0.787 - - - 0.787 - - - - - staphylococcal nuclease and tudor domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3124]
81. ccdc25 ENSDARG00000021753 3837 0.787 - - - 0.787 - - - - - coiled-coil domain containing 25 [Source:ZFIN;Acc:ZDB-GENE-040426-1389]
82. sdprb sdprb 13647 0.787 - - - 0.787 - - - - -
83. kcnk1a ENSDARG00000045067 743 0.786 - - - 0.786 - - - - - potassium channel, subfamily K, member 1a [Source:ZFIN;Acc:ZDB-GENE-070620-26]
84. mphosph10 ENSDARG00000012495 1679 0.786 - - - 0.786 - - - - - M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) [Source:ZFIN;Acc:ZDB-GENE-030131-2146]
85. yaf2 ENSDARG00000015966 1905 0.786 - - - 0.786 - - - - - YY1 associated factor 2 [Source:ZFIN;Acc:ZDB-GENE-041210-115]
86. med31 ENSDARG00000008020 4161 0.786 - 0.786 - - - - - - - mediator complex subunit 31 [Source:ZFIN;Acc:ZDB-GENE-040718-114]
87. ankra2 ENSDARG00000035399, ENSDARG00000111289 1303 0.786 - - - 0.786 - - - - - ankyrin repeat, family A (RFXANK-like), 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2141]
88. man1b1 man1b1 3294 0.785 - - - 0.785 - - - - -
89. zgc:154055 ENSDARG00000103924 452 0.785 - - - 0.785 - - - - - zgc:154055 [Source:ZFIN;Acc:ZDB-GENE-060929-612]
90. SNORA38 SNORA38 574 0.785 - - - 0.785 - - - - -
91. eif4a1b ENSDARG00000003032, ENSDARG00000116907 14301 0.785 - - - 0.785 - - - - - eukaryotic translation initiation factor 4A1B [Source:ZFIN;Acc:ZDB-GENE-040120-6]
92. OLFML2A ENSDARG00000005648 1658 0.785 - - - 0.785 - - - - - olfactomedin-like 2A [Source:ZFIN;Acc:ZDB-GENE-081105-107]
93. pcnxl2 610 0.785 - - - 0.785 - - - - - pecanex-like 2 (Drosophila), transcript variant X2
94. PLD5 PLD5 496 0.785 - - - 0.785 - - - - -
95. jupa ENSDARG00000070787, ENSDARG00000112777 20968 0.784 - 0.784 - - - - - - - junction plakoglobin a [Source:ZFIN;Acc:ZDB-GENE-991207-22]
96. fam204a ENSDARG00000039699, ENSDARG00000114877 1178 0.784 - - - 0.784 - - - - - family with sequence similarity 204, member A [Source:ZFIN;Acc:ZDB-GENE-040718-271]
97. C5H9orf41 C5H9orf41 789 0.782 - - - 0.782 - - - - -
98. tspan18b ENSDARG00000015015 1433 0.781 - - - 0.781 - - - - - tetraspanin 18b [Source:ZFIN;Acc:ZDB-GENE-040718-137]
99. gli2b ENSDARG00000020884 1468 0.78 - - - 0.780 - - - - - GLI family zinc finger 2b [Source:ZFIN;Acc:ZDB-GENE-050523-1]
100. ccar1 ENSDARG00000074759, ENSDARG00000114899 1329 0.78 - - - 0.780 - - - - - cell division cycle and apoptosis regulator 1 [Source:ZFIN;Acc:ZDB-GENE-030131-146]

There are 109 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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