Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for col1a1a

Gene Name Gene ID Reads Annotation
col1a1a ENSDARG00000012405, ENSDARG00000116113 178153 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]










Genes with expression patterns similar to col1a1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. col1a1a ENSDARG00000012405, ENSDARG00000116113 178153 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
2. and1 ENSDARG00000088514 37603 4.208 - - 0.728 0.870 0.738 - - 0.948 0.924 actinodin1 [Source:ZFIN;Acc:ZDB-GENE-030131-9105]
3. im:7150988 ENSDARG00000109310 28520 3.366 - - - 0.824 0.834 - - 0.809 0.899 im:7150988 [Source:ZFIN;Acc:ZDB-GENE-050309-169]
4. and2 ENSDARG00000079302 20939 3.205 - - - 0.743 0.789 - - 0.913 0.760 actinodin2 [Source:ZFIN;Acc:ZDB-GENE-041105-2]
5. vcanb ENSDARG00000009401 3611 2.993 0.751 - - 0.730 - - - 0.790 0.722 versican b [Source:ZFIN;Acc:ZDB-GENE-030131-2185]
6. CABZ01074130.1 ENSDARG00000105274 26501 2.535 - - - 0.773 - - - 0.917 0.845
7. cfl1l ENSDARG00000012972 109130 2.464 - - - 0.830 0.817 - - 0.817 - cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
8. frem2a ENSDARG00000076856 11022 2.432 - - - 0.734 0.795 - - 0.903 - Fras1 related extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-081119-3]
9. and3 ENSDARG00000056873 22650 2.358 - - - 0.726 - - - 0.763 0.869 actinodin3 [Source:ZFIN;Acc:ZDB-GENE-040724-185]
10. fkbp9 ENSDARG00000005023 17518 2.352 - - - - 0.839 - - 0.796 0.717 FK506 binding protein 9 [Source:ZFIN;Acc:ZDB-GENE-040801-23]
11. efemp2a ENSDARG00000094324 39261 2.317 0.704 - - 0.903 0.710 - - - - EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
12. tagln2 ENSDARG00000033466, ENSDARG00000110753 7636 2.196 - - - - 0.735 - - 0.705 0.756 transgelin 2 [Source:ZFIN;Acc:ZDB-GENE-020802-2]
13. bcam ENSDARG00000090190 39912 1.726 - - - 0.868 0.858 - - - - basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
14. aplp2 ENSDARG00000054864 7958 1.64 - - - 0.841 0.799 - - - - amyloid beta (A4) precursor-like protein 2 [Source:ZFIN;Acc:ZDB-GENE-061009-28]
15. zgc:92061 zgc:92061 21304 1.628 - - - - - - - 0.757 0.871
16. pfn1 ENSDARG00000088091 71242 1.577 - - - - - - - 0.814 0.763 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
17. wu:fb17f05 wu:fb17f05 13622 1.563 - - 0.733 - - - - 0.830 -
18. serpinh1b ENSDARG00000019949 11693 1.542 - - - - 0.822 - - 0.720 - serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b [Source:ZFIN;Acc:ZDB-GENE-990415-93]
19. krt8 ENSDARG00000058358, ENSDARG00000109279 85624 1.533 - - - - - - - 0.735 0.798 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
20. ogn 5002 1.529 - - - - 0.821 - - 0.708 - osteoglycin
21. si:ch211-217k17.9 ENSDARG00000093494 3452 1.511 - - - 0.729 0.782 - - - - si:ch211-217k17.9 [Source:ZFIN;Acc:ZDB-GENE-061207-21]
22. zgc:101000 zgc:101000 9041 1.497 - - - - 0.719 0.778 - - -
23. gpx7 ENSDARG00000091511 3045 1.493 - - - - - - - 0.713 0.780 glutathione peroxidase 7 [Source:ZFIN;Acc:ZDB-GENE-050522-419]
24. ntd5 ENSDARG00000040944 4988 1.479 - - - 0.706 0.773 - - - - ntl-dependent gene 5 [Source:ZFIN;Acc:ZDB-GENE-031030-7]
25. hoxc12a ENSDARG00000070352 7409 1.477 - - - 0.702 0.775 - - - - homeobox C12a [Source:ZFIN;Acc:ZDB-GENE-000822-6]
26. cldni ENSDARG00000054616, ENSDARG00000111133 16328 1.471 - - - 0.767 - - - - 0.704 claudin i [Source:ZFIN;Acc:ZDB-GENE-010328-9]
27. NDNF ENSDARG00000062936 7287 1.442 - - - 0.732 0.710 - - - - neuron-derived neurotrophic factor [Source:ZFIN;Acc:ZDB-GENE-030131-207]
28. tmsb4x ENSDARG00000077777 670040 0.878 - - - - - - - - 0.878 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
29. rsu1 ENSDARG00000102885 3604 0.835 0.835 - - - - - - - - Ras suppressor protein 1 [Source:ZFIN;Acc:ZDB-GENE-030616-518]
30. fat1 fat1 3934 0.822 0.822 - - - - - - - -
31. sparc ENSDARG00000019353 38281 0.82 - - - - - - - 0.820 - secreted protein, acidic, cysteine-rich (osteonectin) [Source:ZFIN;Acc:ZDB-GENE-030131-9]
32. capn12 ENSDARG00000010758, ENSDARG00000116381 3116 0.811 - - - - 0.811 - - - - calpain 12 [Source:ZFIN;Acc:ZDB-GENE-050419-245]
33. CU929408.1 CU929408.1 714 0.807 0.807 - - - - - - - -
34. col1a2 ENSDARG00000020007 36228 0.807 0.807 - - - - - - - - collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
35. ppp1r14c ENSDARG00000077341 1587 0.806 - - - - 0.806 - - - - protein phosphatase 1, regulatory (inhibitor) subunit 14C [Source:ZFIN;Acc:ZDB-GENE-050706-92]
36. ppl ENSDARG00000101043 9196 0.806 - - - - 0.806 - - - - periplakin [Source:ZFIN;Acc:ZDB-GENE-041008-196]
37. gys1 ENSDARG00000016875 2037 0.805 0.805 - - - - - - - - glycogen synthase 1 (muscle) [Source:ZFIN;Acc:ZDB-GENE-040426-1243]
38. NID1 NID1 6192 0.795 - - - - - - - - 0.795
39. CR847934.1 CR847934.1 2658 0.794 0.794 - - - - - - - -
40. si:ch211-51c14.1 ENSDARG00000054645, ENSDARG00000110953 2434 0.79 0.790 - - - - - - - - si:ch211-51c14.1 [Source:ZFIN;Acc:ZDB-GENE-120215-48]
41. anxa1c ENSDARG00000104359 23181 0.79 - - - - - - - - 0.790 annexin A1c [Source:ZFIN;Acc:ZDB-GENE-030131-5274]
42. akap12b ENSDARG00000055678, ENSDARG00000110544 8317 0.787 0.787 - - - - - - - - A kinase (PRKA) anchor protein 12b [Source:ZFIN;Acc:ZDB-GENE-030131-9753]
43. st14a ENSDARG00000061173 3800 0.786 - - - - - - - - 0.786 suppression of tumorigenicity 14 (colon carcinoma) a [Source:ZFIN;Acc:ZDB-GENE-030131-6496]
44. actb1 ENSDARG00000037746, ENSDARG00000113649 273139 0.786 - - - - - - - 0.786 - actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
45. cdkl1 ENSDARG00000017329 3345 0.785 - - - 0.785 - - - - - cyclin-dependent kinase-like 1 (CDC2-related kinase) [Source:ZFIN;Acc:ZDB-GENE-040808-34]
46. cuedc1b ENSDARG00000054748 1638 0.783 0.783 - - - - - - - - CUE domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-070424-29]
47. lama5 ENSDARG00000058543 2782 0.783 - - - - 0.783 - - - - laminin, alpha 5 [Source:ZFIN;Acc:ZDB-GENE-030131-9823]
48. si:ch211-151o1.2 si:ch211-151o1.2 3580 0.78 0.780 - - - - - - - -
49. WIPF2 WIPF2 3171 0.779 - - - - - - - - 0.779
50. perp ENSDARG00000063572 6423 0.779 - - - - - 0.779 - - - PERP, TP53 apoptosis effector [Source:ZFIN;Acc:ZDB-GENE-050104-1]
51. si:dkeyp-110e4.6 ENSDARG00000061845 1755 0.778 0.778 - - - - - - - - si:dkeyp-110e4.6 [Source:ZFIN;Acc:ZDB-GENE-030219-75]
52. si:dkey-193p11.2 ENSDARG00000096712 3500 0.777 - - - - 0.777 - - - - si:dkey-193p11.2 [Source:ZFIN;Acc:ZDB-GENE-030131-8407]
53. eno1a ENSDARG00000022456, ENSDARG00000116458 14401 0.776 0.776 - - - - - - - - enolase 1a, (alpha) [Source:ZFIN;Acc:ZDB-GENE-030131-6048]
54. tuba8l2 ENSDARG00000031164 19019 0.775 - - - - 0.775 - - - - tubulin, alpha 8 like 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1646]
55. stox1 ENSDARG00000062593, ENSDARG00000116897 1174 0.775 0.775 - - - - - - - - storkhead box 1 [Source:ZFIN;Acc:ZDB-GENE-030925-2]
56. phlda1 ENSDARG00000099129 711 0.774 0.774 - - - - - - - - pleckstrin homology-like domain, family A, member 1 [Source:ZFIN;Acc:ZDB-GENE-041010-103]
57. hoxa11b ENSDARG00000007009 3983 0.772 - - - - 0.772 - - - - homeobox A11b [Source:ZFIN;Acc:ZDB-GENE-990415-4]
58. capns1b ENSDARG00000013804 37726 0.771 - - - - - - - 0.771 - calpain, small subunit 1 b [Source:ZFIN;Acc:ZDB-GENE-030131-5206]
59. slc45a2 ENSDARG00000002593, ENSDARG00000111365 776 0.77 0.770 - - - - - - - - solute carrier family 45, member 2 [Source:ZFIN;Acc:ZDB-GENE-050208-97]
60. hhatlb ENSDARG00000005139 6674 0.768 0.768 - - - - - - - - hedgehog acyltransferase like, b [Source:ZFIN;Acc:ZDB-GENE-050506-130]
61. FP067396.1 FP067396.1 32149 0.768 - - - 0.768 - - - - -
62. col14a1a ENSDARG00000005762 4778 0.765 - - - 0.765 - - - - - collagen, type XIV, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9889]
63. EIF4G1 EIF4G1 19676 0.764 0.764 - - - - - - - -
64. tpd52 ENSDARG00000061713, ENSDARG00000111437 3630 0.764 - - - 0.764 - - - - - tumor protein D52 [Source:ZFIN;Acc:ZDB-GENE-060503-680]
65. ecm2 ENSDARG00000071549 1527 0.764 - - - - 0.764 - - - - extracellular matrix protein 2, female organ and adipocyte specific [Source:ZFIN;Acc:ZDB-GENE-050208-651]
66. gnai2a ENSDARG00000018174 6549 0.762 - - - - 0.762 - - - - guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2a [Source:ZFIN;Acc:ZDB-GENE-030131-8365]
67. C12H10orf88 C12H10orf88 449 0.761 0.761 - - - - - - - -
68. snx1a ENSDARG00000071031 3975 0.761 - - - - - 0.761 - - - sorting nexin 1a [Source:ZFIN;Acc:ZDB-GENE-060302-3]
69. akap6 ENSDARG00000077295 1382 0.76 0.760 - - - - - - - - A kinase (PRKA) anchor protein 6 [Source:ZFIN;Acc:ZDB-GENE-120207-2]
70. tln1 ENSDARG00000100729 5744 0.759 - - - - - - - - 0.759 talin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-48]
71. pi15a ENSDARG00000045378 2361 0.759 - - - 0.759 - - - - - peptidase inhibitor 15a [Source:ZFIN;Acc:ZDB-GENE-040724-135]
72. nid1a ENSDARG00000068710 3948 0.759 0.759 - - - - - - - - nidogen 1a [Source:ZFIN;Acc:ZDB-GENE-050302-58]
73. pfn2l ENSDARG00000012682 21690 0.758 0.758 - - - - - - - - profilin 2 like [Source:ZFIN;Acc:ZDB-GENE-030131-34]
74. rap1a rap1a 5654 0.758 0.758 - - - - - - - -
75. FHOD3_1 FHOD3_1 983 0.757 0.757 - - - - - - - -
76. COL13A1 1565 0.757 - - - - 0.757 - - - - collagen, type XIII, alpha 1, transcript variant X1
77. cxcl12b ENSDARG00000055100, ENSDARG00000113088 4476 0.755 - - - 0.755 - - - - - chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1) [Source:ZFIN;Acc:ZDB-GENE-030721-1]
78. PTP4A3 ENSDARG00000039997 3814 0.755 0.755 - - - - - - - - protein tyrosine phosphatase type IVA, member 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2220]
79. myf6 ENSDARG00000029830 1911 0.755 0.755 - - - - - - - - myogenic factor 6 [Source:ZFIN;Acc:ZDB-GENE-040309-2]
80. col18a1 col18a1 20555 0.754 - - - - - - - 0.754 -
81. ZNF70_2 ZNF70_2 1866 0.754 0.754 - - - - - - - -
82. TTC28 ENSDARG00000114920 580 0.754 0.754 - - - - - - - - tetratricopeptide repeat domain 28 [Source:HGNC Symbol;Acc:HGNC:29179]
83. ak2 ENSDARG00000005926 7598 0.753 - 0.753 - - - - - - - adenylate kinase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-512]
84. bves ENSDARG00000058548 2291 0.753 0.753 - - - - - - - - blood vessel epicardial substance [Source:ZFIN;Acc:ZDB-GENE-040624-11]
85. EFTUD1 400 0.751 0.751 - - - - - - - - elongation factor Tu GTP binding domain containing 1
86. hnrnpub ENSDARG00000004735 16496 0.751 - 0.751 - - - - - - - heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
87. tmed9 ENSDARG00000004261 10013 0.75 - - - - - 0.750 - - - transmembrane p24 trafficking protein 9 [Source:ZFIN;Acc:ZDB-GENE-050417-434]
88. COL22A1 COL22A1 4473 0.75 0.750 - - - - - - - -
89. tyrp1b ENSDARG00000056151 3803 0.748 0.748 - - - - - - - - tyrosinase-related protein 1b [Source:ZFIN;Acc:ZDB-GENE-040718-249]
90. meox1 ENSDARG00000007891, ENSDARG00000115382 1584 0.748 - - - - 0.748 - - - - mesenchyme homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040718-149]
91. rps12 ENSDARG00000036875, ENSDARG00000115157 92636 0.747 - - - 0.747 - - - - - ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
92. zgc:153867 35088 0.747 - - - 0.747 - - - - - zgc:153867, transcript variant X2
93. SHISA2 1782 0.747 - - - - 0.747 - - - - shisa family member 2, transcript variant X2
94. mitfa ENSDARG00000003732 1288 0.747 0.747 - - - - - - - - microphthalmia-associated transcription factor a [Source:ZFIN;Acc:ZDB-GENE-990910-11]
95. AL929434.1 AL929434.1 3294 0.746 - - - 0.746 - - - - -
96. sypl2b ENSDARG00000000690 2006 0.746 0.746 - - - - - - - - synaptophysin-like 2b [Source:ZFIN;Acc:ZDB-GENE-050417-309]
97. aaas ENSDARG00000102274 1192 0.745 0.745 - - - - - - - - achalasia, adrenocortical insufficiency, alacrimia [Source:ZFIN;Acc:ZDB-GENE-030912-4]
98. si:ch211-243g18.2 ENSDARG00000044261 4483 0.745 - - - - 0.745 - - - - si:ch211-243g18.2 [Source:ZFIN;Acc:ZDB-GENE-030131-2830]
99. krt4 ENSDARG00000017624, ENSDARG00000115790 2008869 0.744 - - - - - - - 0.744 - keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
100. tmed2 ENSDARG00000026908 9070 0.744 - - - - - 0.744 - - - transmembrane p24 trafficking protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-269]

There are 123 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA