Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for cnot1

Gene Name Gene ID Reads Annotation
cnot1 ENSDARG00000004174, ENSDARG00000109411 4625 CCR4-NOT transcription complex, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040915-1]










Genes with expression patterns similar to cnot1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. cnot1 ENSDARG00000004174, ENSDARG00000109411 4625 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 CCR4-NOT transcription complex, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040915-1]
2. hmgn3 ENSDARG00000036754, ENSDARG00000116728 11573 3.3 - 0.761 0.894 - - - - 0.811 0.834 high mobility group nucleosomal binding domain 3 [Source:ZFIN;Acc:ZDB-GENE-041114-180]
3. myef2 ENSDARG00000059398 6050 3.148 - - - - 0.735 - 0.749 0.879 0.785 myelin expression factor 2 [Source:ZFIN;Acc:ZDB-GENE-051120-114]
4. ywhae1 ENSDARG00000006399, ENSDARG00000109636, ENSDARG00000109789 13364 2.726 - - - 0.988 - 0.862 - 0.876 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-030131-779]
5. alas1 ENSDARG00000021059 4892 2.672 - - - 0.997 - - 0.836 0.839 - aminolevulinate, delta-, synthase 1 [Source:ZFIN;Acc:ZDB-GENE-001229-2]
6. COL4A3BP COL4A3BP 3288 2.56 - - 0.967 - - - 0.704 0.889 -
7. tcf3b ENSDARG00000099999, ENSDARG00000112646 3589 2.504 - - - - - 0.863 - 0.824 0.817 transcription factor 3b [Source:ZFIN;Acc:ZDB-GENE-051113-64]
8. snrpb ENSDARG00000011125 11729 2.479 - - - - - 0.800 0.758 0.921 - small nuclear ribonucleoprotein polypeptides B and B1 [Source:ZFIN;Acc:ZDB-GENE-040426-1819]
9. idh3g ENSDARG00000023648 4877 2.449 - 0.700 - 0.998 - 0.751 - - - isocitrate dehydrogenase 3 (NAD+) gamma [Source:ZFIN;Acc:ZDB-GENE-050417-435]
10. naa40 ENSDARG00000024109, ENSDARG00000090570 4759 2.447 - - - - - 0.890 - 0.773 0.784 N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050417-105]
11. slc39a7 ENSDARG00000104451 6368 2.292 - 0.700 - - - 0.827 0.765 - - solute carrier family 39 (zinc transporter), member 7 [Source:ZFIN;Acc:ZDB-GENE-991110-20]
12. smad4 smad4 2519 2.257 - 0.782 0.721 - - - 0.754 - -
13. cul4b ENSDARG00000060510 6053 1.968 - - 0.974 0.994 - - - - - cullin 4B [Source:ZFIN;Acc:ZDB-GENE-041008-208]
14. tchp ENSDARG00000035605 1695 1.921 - - - 0.998 - - - 0.923 - trichoplein, keratin filament binding [Source:ZFIN;Acc:ZDB-GENE-060421-3368]
15. prpf40a ENSDARG00000058467 6565 1.776 - - - 0.996 - - - - 0.780 PRP40 pre-mRNA processing factor 40 homolog A [Source:ZFIN;Acc:ZDB-GENE-030131-274]
16. ncalda ENSDARG00000070688 5069 1.773 - - - - - 0.828 - 0.945 - neurocalcin delta a [Source:ZFIN;Acc:ZDB-GENE-080220-28]
17. foxp1b ENSDARG00000014181 2594 1.77 - - - - - - 0.878 0.892 - forkhead box P1b [Source:ZFIN;Acc:ZDB-GENE-041203-1]
18. arcn1a ENSDARG00000002792 2847 1.766 - - 0.950 - - 0.816 - - - archain 1a [Source:ZFIN;Acc:ZDB-GENE-021031-2]
19. SERBP1 SERBP1 9276 1.745 - - - 0.997 - - 0.748 - -
20. acsl3b ENSDARG00000014674 3748 1.723 - - - 0.997 - - - - 0.726 acyl-CoA synthetase long chain family member 3b [Source:ZFIN;Acc:ZDB-GENE-030131-492]
21. zgc:56493 ENSDARG00000031435 33407 1.721 - - - 0.972 - 0.749 - - - zgc:56493 [Source:ZFIN;Acc:ZDB-GENE-030131-8581]
22. dip2a ENSDARG00000078058 1625 1.717 - - - - - - 0.800 0.917 - disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
23. pdap1a ENSDARG00000092546, ENSDARG00000116115 7617 1.716 - - - 0.996 - - - - 0.720 pdgfa associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1693]
24. tshz1 ENSDARG00000005026 1948 1.716 - 0.741 0.975 - - - - - - teashirt zinc finger homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-030820-3]
25. pycr1 pycr1 1258 1.715 - - 0.717 0.998 - - - - -
26. slmo2 slmo2 5559 1.715 - 0.720 - 0.995 - - - - -
27. tuba1c ENSDARG00000055216 8384 1.713 - - - 0.992 0.721 - - - - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
28. smc1al ENSDARG00000058203 8838 1.713 - - - 0.994 - - - - 0.719 structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]
29. AGO1 ENSDARG00000092644 4521 1.711 - - - 0.992 - - - - 0.719 argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
30. ryk ENSDARG00000007231 1611 1.708 - - - - - - 0.789 0.919 - receptor-like tyrosine kinase [Source:ZFIN;Acc:ZDB-GENE-070209-277]
31. tmed4 ENSDARG00000024954 3476 1.707 - 0.880 - - - 0.827 - - - transmembrane p24 trafficking protein 4 [Source:ZFIN;Acc:ZDB-GENE-040625-140]
32. tead1a ENSDARG00000028159 3574 1.706 - - - - - - 0.769 0.937 - TEA domain family member 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2101]
33. znf319 znf319 3027 1.699 - - - - - - - 0.909 0.790
34. atrx ENSDARG00000042236, ENSDARG00000112921, ENSDARG00000116878 7922 1.692 - - - - - 0.805 - 0.887 - alpha thalassemia/mental retardation syndrome X-linked homolog (human) [Source:ZFIN;Acc:ZDB-GENE-030912-11]
35. grpel1 ENSDARG00000010021 3055 1.691 - - - - - - 0.772 0.919 - GrpE-like 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-051120-111]
36. dr1 ENSDARG00000105098, ENSDARG00000113528 5263 1.683 - - - - - 0.788 - 0.895 - down-regulator of transcription 1 [Source:ZFIN;Acc:ZDB-GENE-061013-797]
37. atf4b2 atf4b2 4734 1.683 - - - - - - 0.765 0.918 -
38. kif22 ENSDARG00000102624 3694 1.682 - 0.795 - - - - - 0.887 - kinesin family member 22 [Source:ZFIN;Acc:ZDB-GENE-080204-34]
39. plk1 ENSDARG00000058471, ENSDARG00000111745 7020 1.674 - 0.800 - - - - 0.874 - - polo-like kinase 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-021115-7]
40. GATAD2B ENSDARG00000005834 3855 1.666 - - - - - - - 0.933 0.733 GATA zinc finger domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-060503-655]
41. prkag1 ENSDARG00000003818 2800 1.663 - - - - - - - 0.934 0.729 protein kinase, AMP-activated, gamma 1 non-catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-040426-2188]
42. THEM4 ENSDARG00000061621 364 1.662 - - - - - - 0.751 0.911 - thioesterase superfamily member 4 [Source:ZFIN;Acc:ZDB-GENE-070112-982]
43. SH3BGRL ENSDARG00000058302 4525 1.66 - 0.822 - - - 0.838 - - - SH3 domain binding glutamate-rich protein like [Source:ZFIN;Acc:ZDB-GENE-040426-1376]
44. CPEB4 CPEB4 3249 1.656 - - - - - - 0.776 0.880 -
45. BAZ2B BAZ2B 3285 1.656 - - - - - - 0.773 0.883 -
46. get4 ENSDARG00000024398 1818 1.654 - - - - - - 0.770 0.884 - golgi to ER traffic protein 4 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-5399]
47. klc2 3058 1.653 0.738 - - - - - - 0.915 - kinesin light chain 2
48. crb2a ENSDARG00000060106 1307 1.652 - - 0.720 - - - - 0.932 - crumbs family member 2a [Source:ZFIN;Acc:ZDB-GENE-060612-1]
49. nt5c2a ENSDARG00000039399 3062 1.647 - 0.745 - - - - - 0.902 - 5'-nucleotidase, cytosolic IIa [Source:ZFIN;Acc:ZDB-GENE-030131-3566]
50. U6 U6 931 1.645 - - - - - - 0.723 0.922 -
51. phc2b_1 ENSDARG00000013224 1316 1.643 - - 0.719 - - - - 0.924 - polyhomeotic homolog 2b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-1113]
52. pafah1b1a ENSDARG00000032013 3183 1.642 - 0.793 - - - - - 0.849 - platelet-activating factor acetylhydrolase 1b, regulatory subunit 1a [Source:ZFIN;Acc:ZDB-GENE-040116-2]
53. boc ENSDARG00000074335 4832 1.633 - - - - - - 0.741 0.892 - BOC cell adhesion associated, oncogene regulated [Source:ZFIN;Acc:ZDB-GENE-030131-6560]
54. C2H6orf52 C2H6orf52 2847 1.633 - - - - - 0.756 - 0.877 -
55. phf12a ENSDARG00000074303 1025 1.632 - - 0.719 - - - - 0.913 - PHD finger protein 12a [Source:ZFIN;Acc:ZDB-GENE-030131-3876]
56. cops7a ENSDARG00000022788, ENSDARG00000112421 5302 1.63 - - - - - - 0.775 0.855 - COP9 constitutive photomorphogenic homolog subunit 7A [Source:ZFIN;Acc:ZDB-GENE-030131-8680]
57. CABZ01073424.1 ENSDARG00000107858 688 1.627 - - - - - - 0.717 0.910 -
58. B3GNT1 B3GNT1 601 1.625 - - - - - - 0.701 0.924 -
59. hmgb3a ENSDARG00000056725 15668 1.624 - - - - 0.726 - - 0.898 - high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
60. NAIF1_1 NAIF1_1 1336 1.622 - - 0.710 - - - - 0.912 -
61. tmem243b ENSDARG00000033179, ENSDARG00000114077, ENSDARG00000116817 1171 1.621 - - - - - 0.840 0.781 - - transmembrane protein 243, mitochondrial b [Source:ZFIN;Acc:ZDB-GENE-040426-2205]
62. dido1 ENSDARG00000057940 3819 1.62 - - - - - - 0.713 0.907 - death inducer-obliterator 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6117]
63. FBXL3 FBXL3 1769 1.611 - - - - - - 0.729 0.882 -
64. isoc2 ENSDARG00000013371 1378 1.609 - - - - - - 0.701 0.908 - isochorismatase domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-070518-1]
65. tgif1 ENSDARG00000059337 4020 1.604 - - - - - 0.809 - - 0.795 TGFB-induced factor homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-030131-475]
66. nutf2l ENSDARG00000014499 3927 1.601 - - - - - - 0.787 0.814 - nuclear transport factor 2, like [Source:ZFIN;Acc:ZDB-GENE-020416-1]
67. ier5l ENSDARG00000054906, ENSDARG00000110793, ENSDARG00000114072 4216 1.599 - 0.776 - - - - - - 0.823 immediate early response 5-like [Source:ZFIN;Acc:ZDB-GENE-030131-5134]
68. zgc:63637 zgc:63637 3636 1.598 - 0.805 - - - - - 0.793 -
69. prpsap2 ENSDARG00000019326 1463 1.598 0.706 - - - - - 0.892 - - phosphoribosyl pyrophosphate synthetase-associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2077]
70. ENSDARG00000087348 ENSDARG00000087348 2870 1.596 - - - - - - 0.743 0.853 -
71. ube2i ube2i 13024 1.595 - - - - - - 0.714 0.881 -
72. zmpste24 ENSDARG00000044090, ENSDARG00000115387 3873 1.594 - 0.885 - - - - - - 0.709 zinc metallopeptidase, STE24 homolog [Source:ZFIN;Acc:ZDB-GENE-030131-6312]
73. ip6k2 ip6k2 3926 1.589 - 0.727 - - - - - 0.862 -
74. hnrnpd ENSDARG00000059246, ENSDARG00000109297, ENSDARG00000113453 3440 1.587 - - - - - 0.800 0.787 - - heterogeneous nuclear ribonucleoprotein D [Source:ZFIN;Acc:ZDB-GENE-070424-97]
75. MKI67 ENSDARG00000091150 11038 1.587 - - - - - - 0.713 0.874 - marker of proliferation Ki-67 [Source:ZFIN;Acc:ZDB-GENE-030131-9771]
76. crk ENSDARG00000055635, ENSDARG00000109497, ENSDARG00000115801 5105 1.582 - - - - - 0.795 0.787 - - v-crk avian sarcoma virus CT10 oncogene homolog [Source:ZFIN;Acc:ZDB-GENE-040801-148]
77. med31 ENSDARG00000008020 4161 1.582 - - - - - 0.815 - - 0.767 mediator complex subunit 31 [Source:ZFIN;Acc:ZDB-GENE-040718-114]
78. tomm70a ENSDARG00000029639, ENSDARG00000112054 7715 1.577 - - - - - 0.769 - 0.808 - translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-8173]
79. cyth1a ENSDARG00000005159, ENSDARG00000076742 2796 1.576 - 0.798 - - - 0.778 - - - cytohesin 1a [Source:ZFIN;Acc:ZDB-GENE-030131-657]
80. gid8b ENSDARG00000037589 2121 1.575 - 0.835 - - - 0.740 - - - GID complex subunit 8 homolog b (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030515-4]
81. npm1a ENSDARG00000014329, ENSDARG00000113199 31910 1.572 - - - - - - 0.859 - 0.713 nucleophosmin 1a [Source:ZFIN;Acc:ZDB-GENE-021028-1]
82. tufm ENSDARG00000104173 9292 1.572 - - 0.865 - - - 0.707 - - Tu translation elongation factor, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-050320-73]
83. ccnb1 ENSDARG00000051923 3226 1.568 - - - - - 0.802 - - 0.766 cyclin B1 [Source:ZFIN;Acc:ZDB-GENE-000406-10]
84. tjp1a ENSDARG00000077506 2658 1.566 - - 0.707 - - - 0.859 - - tight junction protein 1a [Source:ZFIN;Acc:ZDB-GENE-031001-2]
85. safb ENSDARG00000020467 5608 1.563 - - - - - 0.822 - - 0.741 scaffold attachment factor B [Source:ZFIN;Acc:ZDB-GENE-030131-698]
86. clptm1 ENSDARG00000018973, ENSDARG00000109534, ENSDARG00000114443 2439 1.559 - 0.761 - - - 0.798 - - - cleft lip and palate associated transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-040801-265]
87. snrpd3l ENSDARG00000076283 7655 1.554 - - - - - 0.785 - - 0.769 small nuclear ribonucleoprotein D3 polypeptide, like [Source:ZFIN;Acc:ZDB-GENE-030131-5219]
88. si:dkeyp-44a8.2 ENSDARG00000092493 8308 1.554 - - - - - - 0.833 - 0.721 si:dkeyp-44a8.2 [Source:ZFIN;Acc:ZDB-GENE-070705-542]
89. ctnnbip1 ENSDARG00000038954 2519 1.554 - - 0.713 - - - - 0.841 - catenin, beta interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-000906-3]
90. enoph1 ENSDARG00000026198, ENSDARG00000111634, ENSDARG00000114318 1305 1.552 - 0.717 - - - - 0.835 - - enolase-phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-040704-73]
91. puf60a ENSDARG00000032175 5618 1.548 - - - - - - 0.789 - 0.759 poly-U binding splicing factor a [Source:ZFIN;Acc:ZDB-GENE-030131-2891]
92. rbms3 ENSDARG00000044574 2514 1.543 - - - - - - 0.807 - 0.736 RNA binding motif, single stranded interacting protein [Source:ZFIN;Acc:ZDB-GENE-060929-244]
93. btg2 ENSDARG00000020298 6616 1.543 - 0.769 - - - - - 0.774 - B-cell translocation gene 2 [Source:ZFIN;Acc:ZDB-GENE-000210-15]
94. pias2 ENSDARG00000092979, ENSDARG00000115060 2317 1.543 - - - - - 0.812 - - 0.731 protein inhibitor of activated STAT, 2 [Source:ZFIN;Acc:ZDB-GENE-060424-1]
95. JMJD1C_1 JMJD1C_1 3094 1.538 - 0.762 - - - 0.776 - - -
96. zswim5 ENSDARG00000055900 4243 1.532 - 0.772 - - - - 0.760 - - zinc finger, SWIM-type containing 5 [Source:ZFIN;Acc:ZDB-GENE-030925-30]
97. tmem248 ENSDARG00000018825 1560 1.526 - - 0.715 - - - 0.811 - - transmembrane protein 248 [Source:ZFIN;Acc:ZDB-GENE-050320-103]
98. ddx19 ENSDARG00000005699 4602 1.524 0.701 - - - - - - - 0.823 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-020419-30]
99. dnajb12b ENSDARG00000087473 3811 1.519 - - - - - - 0.767 - 0.752 DnaJ (Hsp40) homolog, subfamily B, member 12b [Source:ZFIN;Acc:ZDB-GENE-070410-128]
100. gbas gbas 735 1.518 - - 0.715 - - 0.803 - - -

There are 1657 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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